Wall clock time and date at job start Mon Mar 30 2020 01:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09009 * 109.45969 * 2 1 4 4 C 1.53031 * 109.46527 * 119.96458 * 2 1 3 5 5 C 1.53111 * 109.28109 * 179.19793 * 4 2 1 6 6 C 1.53124 * 109.15468 * 302.34078 * 5 4 2 7 7 C 1.53035 * 109.27653 * 57.66741 * 6 5 4 8 8 N 1.46846 * 109.46250 * 240.02130 * 2 1 3 9 9 C 1.46904 * 111.00072 * 54.14579 * 8 2 1 10 10 C 1.52996 * 109.47056 * 190.59757 * 9 8 2 11 11 H 1.08994 * 109.49878 * 302.53384 * 10 9 8 12 12 C 1.53042 * 109.50019 * 182.43284 * 10 9 8 13 13 C 1.53034 * 109.54135 * 178.68430 * 12 10 9 14 14 C 1.53197 * 109.31226 * 61.36346 * 13 12 10 15 15 N 1.46928 * 108.77808 * 305.37051 * 14 13 12 16 16 C 1.36936 * 120.62506 * 233.58721 * 15 14 13 17 17 H 1.07997 * 120.00519 * 37.30935 * 16 15 14 18 18 C 1.38813 * 119.99937 * 217.30099 * 16 15 14 19 19 N 1.31618 * 119.99747 * 8.81921 * 18 16 15 20 20 Si 1.86799 * 120.00347 * 188.81844 * 18 16 15 21 21 H 1.48496 * 109.47369 * 90.00271 * 20 18 16 22 22 H 1.48500 * 109.46959 * 210.00300 * 20 18 16 23 23 H 1.48498 * 109.46841 * 329.99945 * 20 18 16 24 24 C 1.46918 * 118.73891 * 53.60288 * 15 14 13 25 25 H 1.08996 * 109.46818 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47187 * 299.97985 * 1 2 3 27 27 H 1.08999 * 109.46671 * 59.97978 * 1 2 3 28 28 H 1.09001 * 109.50509 * 299.13934 * 4 2 1 29 29 H 1.09004 * 109.50341 * 59.21753 * 4 2 1 30 30 H 1.09001 * 109.52675 * 62.25323 * 5 4 2 31 31 H 1.09001 * 109.52718 * 182.38108 * 5 4 2 32 32 H 1.09005 * 109.51129 * 297.72581 * 6 5 4 33 33 H 1.08992 * 109.49575 * 177.60835 * 6 5 4 34 34 H 1.09001 * 109.46615 * 180.79345 * 7 6 5 35 35 H 1.09004 * 109.46436 * 60.81686 * 7 6 5 36 36 H 1.09000 * 109.46591 * 310.59958 * 9 8 2 37 37 H 1.09002 * 109.47066 * 70.59543 * 9 8 2 38 38 H 1.09008 * 109.45527 * 298.70538 * 12 10 9 39 39 H 1.09000 * 109.45867 * 58.65830 * 12 10 9 40 40 H 1.09000 * 109.49665 * 301.41500 * 13 12 10 41 41 H 1.09001 * 109.50069 * 181.31371 * 13 12 10 42 42 H 1.09000 * 109.58688 * 185.57557 * 14 13 12 43 43 H 1.09003 * 109.70116 * 65.22239 * 14 13 12 44 44 H 0.96999 * 120.00208 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.58567 * 186.60904 * 24 15 14 46 46 H 1.08996 * 109.58805 * 66.18601 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7206 1.2500 5 6 3.5710 -0.7357 1.2357 6 6 4.0547 -1.4188 -0.0466 7 6 3.4866 -0.6777 -1.2590 8 7 2.0193 -0.6918 -1.1993 9 6 1.4373 -0.1107 -2.4166 10 6 1.7542 -1.0102 -3.6129 11 1 2.8340 -1.1285 -3.7033 12 6 1.2006 -0.3750 -4.8905 13 6 1.5456 -1.2577 -6.0921 14 6 0.8941 -2.6328 -5.9142 15 7 1.3082 -3.1883 -4.6186 16 6 1.8724 -4.4337 -4.5419 17 1 2.5470 -4.7696 -5.3154 18 6 1.5773 -5.2645 -3.4696 19 7 0.6282 -4.9313 -2.6207 20 14 2.5270 -6.8553 -3.2316 21 1 3.7187 -6.5983 -2.3838 22 1 1.6549 -7.8579 -2.5686 23 1 2.9621 -7.3745 -4.5530 24 6 1.1050 -2.3825 -3.4071 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3632 0.5142 -0.8898 28 1 1.6896 -0.1978 2.1399 29 1 1.6655 -1.7443 1.2582 30 1 3.9457 0.2873 1.2672 31 1 3.9380 -1.2850 2.1027 32 1 3.7123 -2.4536 -0.0593 33 1 5.1438 -1.3948 -0.0829 34 1 3.8176 -1.1700 -2.1735 35 1 3.8403 0.3533 -1.2531 36 1 0.3567 -0.0292 -2.2994 37 1 1.8604 0.8797 -2.5845 38 1 0.1178 -0.2798 -4.8088 39 1 1.6425 0.6121 -5.0262 40 1 2.6273 -1.3737 -6.1596 41 1 1.1713 -0.7931 -7.0043 42 1 1.2167 -3.2965 -6.7164 43 1 -0.1909 -2.5312 -5.9382 44 1 0.4217 -5.5119 -1.8717 45 1 1.5670 -2.8810 -2.5549 46 1 0.0375 -2.2582 -3.2256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334331928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:06 Heat of formation + Delta-G solvation = 3.240857 kcal Electronic energy + Delta-G solvation = -22235.267871 eV Core-core repulsion = 19352.256482 eV Total energy + Delta-G solvation = -2883.011389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.24719 -37.24964 -33.90279 -32.76557 -32.23091 -30.32209 -29.57978 -26.87272 -25.33395 -25.06067 -22.96796 -21.94456 -21.18374 -20.21915 -19.31804 -18.75518 -16.52498 -15.66694 -15.15344 -14.69685 -14.28050 -14.05295 -13.97353 -13.70613 -13.40525 -13.15131 -13.04993 -12.59409 -12.12368 -12.10451 -11.83528 -11.68332 -11.58696 -11.39187 -11.04881 -10.83335 -10.74048 -10.66849 -10.47959 -10.37684 -10.32028 -10.09163 -9.91627 -9.82837 -9.53609 -9.35489 -9.16280 -8.33810 -7.76076 -6.35491 -5.63818 -3.17479 3.43911 3.50239 3.51456 4.21770 4.58895 4.98237 5.01403 5.11735 5.30013 5.43901 5.51018 5.58169 5.60745 5.65678 5.73087 5.75938 5.79571 5.81490 5.86890 5.93856 6.03395 6.05839 6.08868 6.14793 6.25298 6.32330 6.38628 6.43526 6.45029 6.45909 6.52977 6.59597 6.68147 6.69668 6.88642 6.95619 7.07120 7.17073 7.55295 7.59973 7.70045 7.91922 8.04648 8.68332 9.39714 9.99595 10.62656 11.42863 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.007842 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.037577 B = 3569.817139 C = 4684.943681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.085 3.915 3 H 0.029 0.971 4 C -0.111 4.111 5 C -0.118 4.118 6 C -0.118 4.118 7 C 0.059 3.941 8 N -0.519 5.519 9 C 0.064 3.936 10 C -0.110 4.110 11 H 0.061 0.939 12 C -0.103 4.103 13 C -0.132 4.132 14 C 0.144 3.856 15 N -0.593 5.593 16 C -0.259 4.259 17 H 0.057 0.943 18 C 0.015 3.985 19 N -0.893 5.893 20 Si 0.897 3.103 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.196 3.804 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.020 0.980 36 H 0.076 0.924 37 H 0.017 0.983 38 H 0.052 0.948 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.014 0.986 44 H 0.252 0.748 45 H 0.091 0.909 46 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.812 11.549 4.784 12.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 H 0.047 0.953 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.069 4.069 8 N -0.244 5.244 9 C -0.064 4.064 10 C -0.131 4.131 11 H 0.079 0.921 12 C -0.141 4.141 13 C -0.172 4.172 14 C 0.017 3.983 15 N -0.316 5.316 16 C -0.389 4.389 17 H 0.074 0.926 18 C -0.186 4.186 19 N -0.535 5.535 20 Si 0.727 3.273 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.070 3.930 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.039 0.961 36 H 0.094 0.906 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.032 0.968 44 H 0.062 0.938 45 H 0.109 0.891 46 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 2.584 10.942 4.967 12.291 hybrid contribution 0.733 0.075 0.116 0.746 sum 3.317 11.017 5.083 12.579 Atomic orbital electron populations 1.21942 0.94589 1.03179 1.00935 1.21536 0.95275 0.94571 0.90988 0.95333 1.21619 0.95293 1.01839 0.96159 1.21558 0.96062 0.99992 0.97981 1.21581 0.99126 1.01012 0.93836 1.22069 0.87767 0.97717 0.99374 1.61824 1.06521 1.54716 1.01341 1.22211 0.99803 0.94580 0.89826 1.21901 1.00666 0.98863 0.91670 0.92103 1.21401 1.00033 0.97005 0.95673 1.21987 1.00763 0.98168 0.96234 1.20916 0.95340 0.92010 0.89999 1.44011 1.71213 1.15367 1.00980 1.19040 1.20301 0.90935 1.08613 0.92563 1.25276 0.96552 0.97209 0.99519 1.69982 1.30159 1.37641 1.15767 0.86387 0.79311 0.83760 0.77818 1.21420 1.21764 1.20527 1.20598 0.95880 0.86117 0.90382 0.91100 0.92910 0.92475 0.92269 0.90676 0.92928 0.92252 0.90550 0.92169 0.90024 0.96138 0.90571 0.96527 0.92919 0.94228 0.92732 0.93536 0.93252 0.96833 0.93756 0.89104 0.97066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.80 37.16 0.33 -1.70 16 2 C 0.08 1.21 2.44 -67.72 -0.17 1.05 16 3 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 4 C -0.11 -1.48 5.37 -26.66 -0.14 -1.62 16 5 C -0.12 -1.49 6.00 -26.61 -0.16 -1.65 16 6 C -0.12 -1.70 6.09 -26.65 -0.16 -1.87 16 7 C 0.06 0.92 5.30 -3.83 -0.02 0.90 16 8 N -0.52 -8.70 3.95 -226.68 -0.90 -9.60 16 9 C 0.06 1.07 4.11 -3.82 -0.02 1.06 16 10 C -0.11 -2.14 2.24 -90.50 -0.20 -2.35 16 11 H 0.06 1.25 6.34 -51.93 -0.33 0.92 16 12 C -0.10 -1.81 5.17 -26.69 -0.14 -1.95 16 13 C -0.13 -2.43 6.08 -26.61 -0.16 -2.59 16 14 C 0.14 3.19 6.52 -3.71 -0.02 3.16 16 15 N -0.59 -15.37 2.95 -172.32 -0.51 -15.88 16 16 C -0.26 -7.31 9.51 -15.06 -0.14 -7.45 16 17 H 0.06 1.58 7.84 -52.49 -0.41 1.17 16 18 C 0.01 0.41 5.06 -17.43 -0.09 0.32 16 19 N -0.89 -26.37 11.41 55.49 0.63 -25.74 16 20 Si 0.90 22.13 29.56 -169.99 -5.03 17.11 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 C 0.20 4.75 4.29 -3.71 -0.02 4.73 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.77 6.10 -51.93 -0.32 0.45 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.43 6.19 -51.93 -0.32 1.11 16 35 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 1.28 5.62 -51.93 -0.29 0.99 16 37 H 0.02 0.26 8.12 -51.93 -0.42 -0.16 16 38 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.05 1.08 7.93 -51.93 -0.41 0.66 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.09 2.49 6.24 -51.93 -0.32 2.16 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 339.15 15.07 5.11 5.11 Total: -1.00 -29.40 339.15 -10.53 -39.92 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -8.73 Total: -0.98 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.11 Total: -9.94 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.77 Total: -51.22 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.40 -10.53 -39.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334331928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.164 kcal (2) G-P(sol) polarization free energy of solvation -29.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds