Wall clock time and date at job start Mon Mar 30 2020 01:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09009 * 109.45969 * 2 1 4 4 C 1.53031 * 109.46527 * 119.96458 * 2 1 3 5 5 C 1.53111 * 109.28109 * 179.19793 * 4 2 1 6 6 C 1.53124 * 109.15468 * 302.34078 * 5 4 2 7 7 C 1.53035 * 109.27653 * 57.66741 * 6 5 4 8 8 N 1.46846 * 109.46250 * 240.02130 * 2 1 3 9 9 C 1.46904 * 111.00072 * 54.14579 * 8 2 1 10 10 C 1.52996 * 109.47056 * 190.59757 * 9 8 2 11 11 H 1.08994 * 109.49878 * 302.53384 * 10 9 8 12 12 C 1.53042 * 109.50019 * 182.43284 * 10 9 8 13 13 C 1.53034 * 109.54135 * 178.68430 * 12 10 9 14 14 C 1.53197 * 109.31226 * 61.36346 * 13 12 10 15 15 N 1.46928 * 108.77808 * 305.37051 * 14 13 12 16 16 C 1.36936 * 120.62506 * 233.58721 * 15 14 13 17 17 H 1.07997 * 120.00519 * 37.30935 * 16 15 14 18 18 C 1.38813 * 119.99937 * 217.30099 * 16 15 14 19 19 N 1.31618 * 119.99747 * 8.81921 * 18 16 15 20 20 Si 1.86799 * 120.00347 * 188.81844 * 18 16 15 21 21 H 1.48496 * 109.47369 * 90.00271 * 20 18 16 22 22 H 1.48500 * 109.46959 * 210.00300 * 20 18 16 23 23 H 1.48498 * 109.46841 * 329.99945 * 20 18 16 24 24 C 1.46918 * 118.73891 * 53.60288 * 15 14 13 25 25 H 1.08996 * 109.46818 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47187 * 299.97985 * 1 2 3 27 27 H 1.08999 * 109.46671 * 59.97978 * 1 2 3 28 28 H 1.09001 * 109.50509 * 299.13934 * 4 2 1 29 29 H 1.09004 * 109.50341 * 59.21753 * 4 2 1 30 30 H 1.09001 * 109.52675 * 62.25323 * 5 4 2 31 31 H 1.09001 * 109.52718 * 182.38108 * 5 4 2 32 32 H 1.09005 * 109.51129 * 297.72581 * 6 5 4 33 33 H 1.08992 * 109.49575 * 177.60835 * 6 5 4 34 34 H 1.09001 * 109.46615 * 180.79345 * 7 6 5 35 35 H 1.09004 * 109.46436 * 60.81686 * 7 6 5 36 36 H 1.09000 * 109.46591 * 310.59958 * 9 8 2 37 37 H 1.09002 * 109.47066 * 70.59543 * 9 8 2 38 38 H 1.09008 * 109.45527 * 298.70538 * 12 10 9 39 39 H 1.09000 * 109.45867 * 58.65830 * 12 10 9 40 40 H 1.09000 * 109.49665 * 301.41500 * 13 12 10 41 41 H 1.09001 * 109.50069 * 181.31371 * 13 12 10 42 42 H 1.09000 * 109.58688 * 185.57557 * 14 13 12 43 43 H 1.09003 * 109.70116 * 65.22239 * 14 13 12 44 44 H 0.96999 * 120.00208 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.58567 * 186.60904 * 24 15 14 46 46 H 1.08996 * 109.58805 * 66.18601 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7206 1.2500 5 6 3.5710 -0.7357 1.2357 6 6 4.0547 -1.4188 -0.0466 7 6 3.4866 -0.6777 -1.2590 8 7 2.0193 -0.6918 -1.1993 9 6 1.4373 -0.1107 -2.4166 10 6 1.7542 -1.0102 -3.6129 11 1 2.8340 -1.1285 -3.7033 12 6 1.2006 -0.3750 -4.8905 13 6 1.5456 -1.2577 -6.0921 14 6 0.8941 -2.6328 -5.9142 15 7 1.3082 -3.1883 -4.6186 16 6 1.8724 -4.4337 -4.5419 17 1 2.5470 -4.7696 -5.3154 18 6 1.5773 -5.2645 -3.4696 19 7 0.6282 -4.9313 -2.6207 20 14 2.5270 -6.8553 -3.2316 21 1 3.7187 -6.5983 -2.3838 22 1 1.6549 -7.8579 -2.5686 23 1 2.9621 -7.3745 -4.5530 24 6 1.1050 -2.3825 -3.4071 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3632 0.5142 -0.8898 28 1 1.6896 -0.1978 2.1399 29 1 1.6655 -1.7443 1.2582 30 1 3.9457 0.2873 1.2672 31 1 3.9380 -1.2850 2.1027 32 1 3.7123 -2.4536 -0.0593 33 1 5.1438 -1.3948 -0.0829 34 1 3.8176 -1.1700 -2.1735 35 1 3.8403 0.3533 -1.2531 36 1 0.3567 -0.0292 -2.2994 37 1 1.8604 0.8797 -2.5845 38 1 0.1178 -0.2798 -4.8088 39 1 1.6425 0.6121 -5.0262 40 1 2.6273 -1.3737 -6.1596 41 1 1.1713 -0.7931 -7.0043 42 1 1.2167 -3.2965 -6.7164 43 1 -0.1909 -2.5312 -5.9382 44 1 0.4217 -5.5119 -1.8717 45 1 1.5670 -2.8810 -2.5549 46 1 0.0375 -2.2582 -3.2256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334331928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:06 Heat of formation + Delta-G solvation = -12.980007 kcal Electronic energy + Delta-G solvation = -22235.971260 eV Core-core repulsion = 19352.256482 eV Total energy + Delta-G solvation = -2883.714778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53034 -38.87655 -35.47979 -34.41697 -33.47114 -32.08049 -31.29048 -28.03869 -27.16226 -26.65595 -24.30917 -23.75429 -22.46225 -21.67826 -20.53778 -20.38529 -18.57988 -16.98514 -16.80067 -16.21783 -15.75792 -15.61962 -15.25240 -15.15601 -14.95959 -14.61967 -14.35437 -14.28375 -13.86223 -13.54585 -13.20036 -12.88419 -12.86649 -12.79859 -12.69354 -12.65824 -12.50351 -12.25952 -11.97102 -11.91268 -11.70714 -11.59481 -11.54211 -11.18340 -11.00977 -10.94029 -10.85480 -10.49845 -8.99766 -8.46294 -7.79686 -5.38139 1.44531 1.45633 1.54507 2.51744 3.00957 3.33537 3.74324 3.88794 3.93306 3.99361 4.10617 4.21604 4.24590 4.29323 4.38317 4.46240 4.47562 4.58546 4.60903 4.70911 4.78778 4.82107 4.91197 4.93454 4.95800 5.00109 5.00771 5.07672 5.11240 5.14140 5.17770 5.26954 5.29496 5.32576 5.38744 5.48267 5.49172 5.56082 5.64572 5.79527 6.00394 6.34732 6.42869 6.51726 7.24728 7.94046 8.49957 9.23359 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.007842 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.037577 B = 3569.817139 C = 4684.943681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 H 0.046 0.954 4 C -0.110 4.110 5 C -0.112 4.112 6 C -0.117 4.117 7 C 0.061 3.939 8 N -0.548 5.548 9 C 0.072 3.928 10 C -0.099 4.099 11 H 0.050 0.950 12 C -0.100 4.100 13 C -0.122 4.122 14 C 0.137 3.863 15 N -0.614 5.614 16 C -0.272 4.272 17 H 0.055 0.945 18 C -0.037 4.037 19 N -0.923 5.923 20 Si 0.961 3.039 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.269 1.269 24 C 0.214 3.786 25 H 0.040 0.960 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.046 0.954 43 H 0.007 0.993 44 H 0.248 0.752 45 H 0.052 0.948 46 H -0.022 1.022 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.834 13.730 4.891 15.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 H 0.064 0.936 4 C -0.148 4.148 5 C -0.149 4.149 6 C -0.155 4.155 7 C -0.066 4.066 8 N -0.273 5.273 9 C -0.056 4.056 10 C -0.120 4.120 11 H 0.068 0.932 12 C -0.138 4.138 13 C -0.161 4.161 14 C 0.012 3.988 15 N -0.338 5.338 16 C -0.403 4.403 17 H 0.072 0.928 18 C -0.234 4.234 19 N -0.567 5.567 20 Si 0.789 3.211 21 H -0.211 1.211 22 H -0.219 1.219 23 H -0.193 1.193 24 C 0.088 3.912 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.025 0.975 44 H 0.057 0.943 45 H 0.071 0.929 46 H -0.004 1.004 Dipole moment (debyes) X Y Z Total from point charges 3.612 13.141 5.051 14.534 hybrid contribution 0.381 -0.625 0.044 0.734 sum 3.994 12.516 5.095 14.091 Atomic orbital electron populations 1.21908 0.94404 1.01593 1.02295 1.21632 0.95451 0.95178 0.90175 0.93599 1.21625 0.95948 1.00407 0.96834 1.21531 0.95370 1.00981 0.97068 1.21566 1.00114 0.99043 0.94758 1.22009 0.87401 0.98529 0.98702 1.61782 1.07208 1.56107 1.02238 1.22075 0.99860 0.94771 0.88924 1.21691 0.99361 0.96580 0.94338 0.93194 1.21394 1.00207 0.98224 0.93932 1.21868 1.00165 0.95826 0.98204 1.21087 0.95286 0.94300 0.88166 1.44319 1.71462 1.15319 1.02674 1.19332 1.20273 0.92070 1.08575 0.92759 1.26000 0.97601 1.00376 0.99406 1.70153 1.31763 1.38648 1.16138 0.85379 0.77865 0.79867 0.77984 1.21149 1.21901 1.19341 1.20241 0.93728 0.88397 0.88801 0.94100 0.90246 0.92400 0.89650 0.93547 0.90911 0.91043 0.94094 0.90457 0.92638 0.94179 0.90800 0.94174 0.92866 0.90730 0.93082 0.90049 0.93492 0.97488 0.94308 0.92941 1.00376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 8.80 71.98 0.63 -3.19 16 2 C 0.08 2.27 2.44 44.94 0.11 2.38 16 3 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 4 C -0.11 -2.79 5.37 30.64 0.16 -2.63 16 5 C -0.11 -2.60 6.00 30.67 0.18 -2.41 16 6 C -0.12 -3.35 6.09 30.65 0.19 -3.16 16 7 C 0.06 1.91 5.30 86.32 0.46 2.36 16 8 N -0.55 -18.31 3.95 -871.08 -3.44 -21.75 16 9 C 0.07 2.34 4.11 86.30 0.35 2.70 16 10 C -0.10 -3.84 2.24 -10.71 -0.02 -3.86 16 11 H 0.05 2.05 6.34 -2.39 -0.02 2.03 16 12 C -0.10 -3.29 5.17 30.62 0.16 -3.13 16 13 C -0.12 -4.22 6.08 30.67 0.19 -4.04 16 14 C 0.14 6.09 6.52 86.36 0.56 6.65 16 15 N -0.61 -32.77 2.95 -699.10 -2.06 -34.83 16 16 C -0.27 -15.80 9.51 84.03 0.80 -15.00 16 17 H 0.05 3.11 7.84 -2.91 -0.02 3.09 16 18 C -0.04 -2.15 5.06 84.86 0.43 -1.72 16 19 N -0.92 -56.98 11.41 21.65 0.25 -56.73 16 20 Si 0.96 46.71 29.56 68.60 2.03 48.74 16 21 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 22 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 24 C 0.21 10.80 4.29 86.37 0.37 11.17 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.49 6.10 -2.39 -0.01 1.48 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.98 6.19 -2.39 -0.01 1.97 16 35 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 2.44 5.62 -2.39 -0.01 2.43 16 37 H 0.04 1.14 8.12 -2.39 -0.02 1.12 16 38 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 43 H 0.01 0.32 8.14 -2.39 -0.02 0.31 16 44 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 45 H 0.05 3.04 6.24 -2.39 -0.01 3.02 16 46 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 Total: -1.00 -66.35 339.15 2.25 -64.10 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.91 Total: 14.35 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 4.57 Total: -13.87 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -5.26 Total: -113.32 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -66.35 2.25 -64.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334331928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.117 kcal (2) G-P(sol) polarization free energy of solvation -66.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds