Wall clock time and date at job start Mon Mar 30 2020 00:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37092 * 119.99669 * 2 1 4 4 H 1.08003 * 120.00023 * 176.66482 * 3 2 1 5 5 C 1.38948 * 120.00215 * 356.67116 * 3 2 1 6 6 N 1.31414 * 120.00082 * 34.15560 * 5 3 2 7 7 Si 1.86803 * 120.00139 * 214.15613 * 5 3 2 8 8 H 1.48507 * 109.46914 * 94.99687 * 7 5 3 9 9 H 1.48494 * 109.47534 * 214.99778 * 7 5 3 10 10 H 1.48500 * 109.47078 * 334.99907 * 7 5 3 11 11 C 1.34778 * 120.00387 * 180.02562 * 2 1 3 12 12 O 1.21286 * 120.00179 * 184.86109 * 11 2 1 13 13 C 1.50699 * 119.99493 * 4.86476 * 11 2 1 14 14 H 1.08998 * 109.88412 * 358.97624 * 13 11 2 15 15 C 1.54320 * 109.89164 * 120.18156 * 13 11 2 16 16 C 1.55436 * 103.04830 * 141.68374 * 15 13 11 17 17 C 1.54910 * 101.51895 * 324.36792 * 16 15 13 18 18 N 1.47452 * 109.88524 * 237.94692 * 13 11 2 19 19 C 1.46898 * 110.99807 * 3.85395 * 18 13 11 20 20 C 1.54266 * 110.03003 * 182.21309 * 19 18 13 21 21 C 1.54965 * 104.15776 * 217.13677 * 20 19 18 22 22 C 1.54892 * 102.78121 * 37.89025 * 21 20 19 23 23 C 1.53876 * 110.03116 * 64.99818 * 19 18 13 24 24 H 1.08993 * 109.46779 * 273.97344 * 1 2 3 25 25 H 1.08993 * 109.47318 * 33.97637 * 1 2 3 26 26 H 1.09001 * 109.46759 * 153.97500 * 1 2 3 27 27 H 0.96997 * 119.99981 * 179.97438 * 6 5 3 28 28 H 1.08997 * 110.70633 * 260.06855 * 15 13 11 29 29 H 1.09000 * 110.70334 * 23.12743 * 15 13 11 30 30 H 1.09002 * 111.10264 * 206.29658 * 16 15 13 31 31 H 1.08992 * 110.99614 * 82.39381 * 16 15 13 32 32 H 1.09000 * 110.37170 * 278.17878 * 17 16 15 33 33 H 1.09000 * 110.36777 * 155.95329 * 17 16 15 34 34 H 1.08998 * 110.01953 * 303.60543 * 19 18 13 35 35 H 1.08998 * 110.49033 * 335.78067 * 20 19 18 36 36 H 1.08996 * 110.48707 * 98.42978 * 20 19 18 37 37 H 1.08998 * 110.72511 * 279.57262 * 21 20 19 38 38 H 1.09006 * 110.76242 * 156.22403 * 21 20 19 39 39 H 1.08995 * 110.48880 * 203.40951 * 22 21 20 40 40 H 1.08997 * 110.48484 * 80.75793 * 22 21 20 41 41 H 1.09011 * 110.02795 * 238.56859 * 23 19 18 42 42 H 1.09000 * 110.03582 * 359.94839 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2291 1.1882 0.0544 5 6 1.4574 2.3896 -0.0699 6 7 0.2827 2.5054 0.5076 7 14 2.1956 3.8414 -0.9847 8 1 1.6736 3.8678 -2.3748 9 1 1.8258 5.1023 -0.2931 10 1 3.6743 3.7081 -1.0138 11 6 2.1390 -1.1672 -0.0005 12 8 3.3486 -1.1691 0.0885 13 6 1.3896 -2.4698 -0.1118 14 1 0.3179 -2.2777 -0.1641 15 6 1.8512 -3.2354 -1.3697 16 6 1.8662 -4.7152 -0.8941 17 6 2.3352 -4.5634 0.5745 18 7 1.6900 -3.3224 1.0532 19 6 2.5506 -2.6180 2.0130 20 6 2.8958 -3.5479 3.1945 21 6 2.8950 -2.6098 4.4279 22 6 1.7169 -1.6501 4.1277 23 6 1.8016 -1.4117 2.6059 24 1 -0.3632 0.0712 1.0252 25 1 -0.3633 0.8521 -0.5743 26 1 -0.3633 -0.9235 -0.4509 27 1 -0.2009 3.3448 0.4592 28 1 1.1411 -3.1002 -2.1854 29 1 2.8484 -2.9150 -1.6715 30 1 2.5769 -5.3059 -1.4720 31 1 0.8683 -5.1509 -0.9423 32 1 3.4202 -4.4683 0.6184 33 1 2.0054 -5.4160 1.1681 34 1 3.4642 -2.2850 1.5205 35 1 2.1373 -4.3229 3.3044 36 1 3.8805 -3.9937 3.0539 37 1 3.8337 -2.0599 4.4949 38 1 2.7104 -3.1738 5.3422 39 1 1.8418 -0.7119 4.6683 40 1 0.7677 -2.1182 4.3882 41 1 2.3523 -0.4933 2.4019 42 1 0.7999 -1.3483 2.1809 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334919379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:41 Heat of formation + Delta-G solvation = -8.713915 kcal Electronic energy + Delta-G solvation = -22360.575323 eV Core-core repulsion = 19341.212441 eV Total energy + Delta-G solvation = -3019.362881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.19716 -37.27311 -36.24940 -34.64771 -31.79713 -30.91237 -29.28979 -27.80333 -26.30055 -26.13727 -24.50447 -21.77337 -21.20490 -19.75594 -19.54458 -18.03184 -16.93916 -16.45527 -15.88778 -15.29088 -14.85949 -14.49247 -14.19873 -13.86079 -13.51522 -12.82766 -12.77745 -12.60596 -12.52224 -12.06266 -11.71008 -11.52096 -11.44104 -10.99077 -10.91864 -10.80381 -10.63416 -10.52514 -10.46132 -10.42135 -10.38100 -10.21123 -10.12332 -9.97279 -9.78522 -8.81234 -8.73174 -7.88831 -7.39112 -6.47863 -3.71849 3.12085 3.25966 3.31233 3.73406 4.11159 4.52706 4.83725 4.93158 4.99343 5.16229 5.19496 5.22148 5.37413 5.47418 5.75088 5.78727 5.85042 6.00144 6.04753 6.07864 6.08067 6.12073 6.18121 6.23937 6.26677 6.28432 6.36123 6.42020 6.48894 6.60019 6.61758 6.79618 6.85422 7.00214 7.07346 7.21071 7.51013 7.53885 7.70802 8.08333 8.46085 9.16996 9.44073 10.00525 10.55696 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020434 B = 0.007538 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.922983 B = 3713.814820 C = 4475.938869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.434 5.434 3 C -0.319 4.319 4 H 0.106 0.894 5 C 0.041 3.959 6 N -0.851 5.851 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.286 1.286 10 H -0.268 1.268 11 C 0.431 3.569 12 O -0.593 6.593 13 C 0.053 3.947 14 H 0.094 0.906 15 C -0.126 4.126 16 C -0.126 4.126 17 C 0.043 3.957 18 N -0.502 5.502 19 C 0.049 3.951 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.110 4.110 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.035 0.965 27 H 0.269 0.731 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 -10.291 1.425 10.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.151 5.151 3 C -0.446 4.446 4 H 0.124 0.876 5 C -0.164 4.164 6 N -0.488 5.488 7 Si 0.731 3.269 8 H -0.204 1.204 9 H -0.212 1.212 10 H -0.193 1.193 11 C 0.220 3.780 12 O -0.481 6.481 13 C -0.058 4.058 14 H 0.112 0.888 15 C -0.165 4.165 16 C -0.164 4.164 17 C -0.085 4.085 18 N -0.228 5.228 19 C -0.059 4.059 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.148 4.148 24 H 0.069 0.931 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.032 -10.218 1.773 10.422 hybrid contribution 0.731 1.107 -0.768 1.533 sum -0.301 -9.111 1.005 9.171 Atomic orbital electron populations 1.21854 0.81355 0.99696 1.01896 1.43750 1.05353 1.05031 1.61013 1.19618 0.93202 0.81910 1.49881 0.87635 1.25149 0.95950 0.98786 0.96535 1.70263 1.15623 1.26992 1.35954 0.86264 0.80121 0.80297 0.80250 1.20382 1.21195 1.19263 1.19916 0.87977 0.84627 0.85506 1.90379 1.14398 1.86461 1.56842 1.22547 1.00709 0.92178 0.90408 0.88805 1.22733 1.02437 0.94363 0.96968 1.22720 1.01316 0.96515 0.95890 1.22972 0.97414 0.93422 0.94675 1.64182 1.42930 1.04158 1.11488 1.23111 0.97434 0.93219 0.92117 1.22446 1.00205 0.97932 0.94799 1.22438 0.98891 0.97447 0.97109 1.22295 0.97685 0.98573 0.97049 1.22212 1.01100 0.97797 0.93718 0.93148 0.89826 0.94706 0.92127 0.91197 0.90577 0.91285 0.91041 0.93664 0.90888 0.88636 0.91481 0.92758 0.91896 0.92340 0.92340 0.92295 0.90637 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.12 8.17 59.85 0.49 2.61 16 2 N -0.43 -10.77 2.42 -122.20 -0.30 -11.07 16 3 C -0.32 -8.69 9.40 -14.94 -0.14 -8.83 16 4 H 0.11 3.09 7.36 -52.48 -0.39 2.70 16 5 C 0.04 1.07 4.85 -17.47 -0.08 0.98 16 6 N -0.85 -21.93 10.80 55.50 0.60 -21.34 16 7 Si 0.90 20.29 29.67 -169.99 -5.04 15.25 16 8 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 9 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 C 0.43 10.15 3.30 -10.99 -0.04 10.11 16 12 O -0.59 -15.76 13.20 5.55 0.07 -15.69 16 13 C 0.05 1.01 2.95 -67.87 -0.20 0.81 16 14 H 0.09 1.76 5.28 -51.93 -0.27 1.48 16 15 C -0.13 -2.10 6.45 -24.75 -0.16 -2.26 16 16 C -0.13 -1.73 7.10 -24.43 -0.17 -1.90 16 17 C 0.04 0.66 5.72 -2.30 -0.01 0.64 16 18 N -0.50 -9.05 4.91 -215.48 -1.06 -10.11 16 19 C 0.05 0.94 1.88 -66.60 -0.13 0.82 16 20 C -0.12 -1.83 5.56 -25.03 -0.14 -1.97 16 21 C -0.12 -1.82 6.91 -24.70 -0.17 -1.99 16 22 C -0.12 -2.00 6.83 -25.07 -0.17 -2.17 16 23 C -0.11 -2.25 4.50 -25.61 -0.12 -2.37 16 24 H 0.05 1.15 7.43 -51.93 -0.39 0.77 16 25 H 0.08 1.97 6.07 -51.93 -0.32 1.65 16 26 H 0.03 0.66 5.53 -51.93 -0.29 0.37 16 27 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.43 7.56 -51.93 -0.39 1.03 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.04 0.73 7.77 -51.93 -0.40 0.33 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 2.20 5.21 -51.93 -0.27 1.92 16 35 H 0.07 1.01 7.92 -51.93 -0.41 0.60 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.84 7.32 -51.92 -0.38 1.46 16 42 H 0.07 1.45 5.80 -51.93 -0.30 1.15 16 LS Contribution 310.77 15.07 4.68 4.68 Total: -1.00 -28.36 310.77 -8.83 -37.19 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.75 Total: 6.59 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.04 Total: -5.51 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -0.76 Total: -42.51 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.07 Total: -15.69 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.04 Total: 15.25 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.36 -8.83 -37.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334919379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.476 kcal (2) G-P(sol) polarization free energy of solvation -28.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds