Wall clock time and date at job start Mon Mar 30 2020 00:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37092 * 119.99669 * 2 1 4 4 H 1.08003 * 120.00023 * 176.66482 * 3 2 1 5 5 C 1.38948 * 120.00215 * 356.67116 * 3 2 1 6 6 N 1.31414 * 120.00082 * 34.15560 * 5 3 2 7 7 Si 1.86803 * 120.00139 * 214.15613 * 5 3 2 8 8 H 1.48507 * 109.46914 * 94.99687 * 7 5 3 9 9 H 1.48494 * 109.47534 * 214.99778 * 7 5 3 10 10 H 1.48500 * 109.47078 * 334.99907 * 7 5 3 11 11 C 1.34778 * 120.00387 * 180.02562 * 2 1 3 12 12 O 1.21286 * 120.00179 * 184.86109 * 11 2 1 13 13 C 1.50699 * 119.99493 * 4.86476 * 11 2 1 14 14 H 1.08998 * 109.88412 * 358.97624 * 13 11 2 15 15 C 1.54320 * 109.89164 * 120.18156 * 13 11 2 16 16 C 1.55436 * 103.04830 * 141.68374 * 15 13 11 17 17 C 1.54910 * 101.51895 * 324.36792 * 16 15 13 18 18 N 1.47452 * 109.88524 * 237.94692 * 13 11 2 19 19 C 1.46898 * 110.99807 * 3.85395 * 18 13 11 20 20 C 1.54266 * 110.03003 * 182.21309 * 19 18 13 21 21 C 1.54965 * 104.15776 * 217.13677 * 20 19 18 22 22 C 1.54892 * 102.78121 * 37.89025 * 21 20 19 23 23 C 1.53876 * 110.03116 * 64.99818 * 19 18 13 24 24 H 1.08993 * 109.46779 * 273.97344 * 1 2 3 25 25 H 1.08993 * 109.47318 * 33.97637 * 1 2 3 26 26 H 1.09001 * 109.46759 * 153.97500 * 1 2 3 27 27 H 0.96997 * 119.99981 * 179.97438 * 6 5 3 28 28 H 1.08997 * 110.70633 * 260.06855 * 15 13 11 29 29 H 1.09000 * 110.70334 * 23.12743 * 15 13 11 30 30 H 1.09002 * 111.10264 * 206.29658 * 16 15 13 31 31 H 1.08992 * 110.99614 * 82.39381 * 16 15 13 32 32 H 1.09000 * 110.37170 * 278.17878 * 17 16 15 33 33 H 1.09000 * 110.36777 * 155.95329 * 17 16 15 34 34 H 1.08998 * 110.01953 * 303.60543 * 19 18 13 35 35 H 1.08998 * 110.49033 * 335.78067 * 20 19 18 36 36 H 1.08996 * 110.48707 * 98.42978 * 20 19 18 37 37 H 1.08998 * 110.72511 * 279.57262 * 21 20 19 38 38 H 1.09006 * 110.76242 * 156.22403 * 21 20 19 39 39 H 1.08995 * 110.48880 * 203.40951 * 22 21 20 40 40 H 1.08997 * 110.48484 * 80.75793 * 22 21 20 41 41 H 1.09011 * 110.02795 * 238.56859 * 23 19 18 42 42 H 1.09000 * 110.03582 * 359.94839 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2291 1.1882 0.0544 5 6 1.4574 2.3896 -0.0699 6 7 0.2827 2.5054 0.5076 7 14 2.1956 3.8414 -0.9847 8 1 1.6736 3.8678 -2.3748 9 1 1.8258 5.1023 -0.2931 10 1 3.6743 3.7081 -1.0138 11 6 2.1390 -1.1672 -0.0005 12 8 3.3486 -1.1691 0.0885 13 6 1.3896 -2.4698 -0.1118 14 1 0.3179 -2.2777 -0.1641 15 6 1.8512 -3.2354 -1.3697 16 6 1.8662 -4.7152 -0.8941 17 6 2.3352 -4.5634 0.5745 18 7 1.6900 -3.3224 1.0532 19 6 2.5506 -2.6180 2.0130 20 6 2.8958 -3.5479 3.1945 21 6 2.8950 -2.6098 4.4279 22 6 1.7169 -1.6501 4.1277 23 6 1.8016 -1.4117 2.6059 24 1 -0.3632 0.0712 1.0252 25 1 -0.3633 0.8521 -0.5743 26 1 -0.3633 -0.9235 -0.4509 27 1 -0.2009 3.3448 0.4592 28 1 1.1411 -3.1002 -2.1854 29 1 2.8484 -2.9150 -1.6715 30 1 2.5769 -5.3059 -1.4720 31 1 0.8683 -5.1509 -0.9423 32 1 3.4202 -4.4683 0.6184 33 1 2.0054 -5.4160 1.1681 34 1 3.4642 -2.2850 1.5205 35 1 2.1373 -4.3229 3.3044 36 1 3.8805 -3.9937 3.0539 37 1 3.8337 -2.0599 4.4949 38 1 2.7104 -3.1738 5.3422 39 1 1.8418 -0.7119 4.6683 40 1 0.7677 -2.1182 4.3882 41 1 2.3523 -0.4933 2.4019 42 1 0.7999 -1.3483 2.1809 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334919379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:41 Heat of formation + Delta-G solvation = -26.388214 kcal Electronic energy + Delta-G solvation = -22361.341738 eV Core-core repulsion = 19341.212441 eV Total energy + Delta-G solvation = -3020.129296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.81971 -38.96685 -37.64136 -36.60143 -33.79137 -32.24543 -30.80139 -29.24683 -28.15762 -27.53535 -26.39813 -23.37313 -22.44744 -21.16313 -21.05144 -19.74159 -18.92602 -18.16781 -17.37469 -16.93420 -16.49230 -16.10174 -15.82537 -15.56905 -14.98685 -14.51109 -14.31277 -14.11552 -13.94575 -13.61830 -13.50129 -13.22332 -13.11424 -12.67064 -12.47178 -12.31318 -12.18906 -12.08745 -11.92781 -11.89669 -11.82863 -11.71074 -11.56475 -11.41841 -11.37632 -10.77932 -10.50436 -9.84778 -9.06074 -8.45862 -5.79426 1.29558 1.38713 1.49800 1.94082 2.24350 2.86033 3.10252 3.17689 3.61076 3.73784 3.83486 3.87279 4.03094 4.12178 4.21714 4.33076 4.57945 4.60236 4.64621 4.68799 4.78993 4.82199 4.83456 4.87704 4.92461 4.96892 5.01278 5.06862 5.07370 5.14709 5.19656 5.27074 5.32687 5.40234 5.41202 5.47696 5.51435 6.00730 6.09196 6.21077 6.46541 7.17316 7.50315 8.08441 8.55467 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020434 B = 0.007538 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.922983 B = 3713.814820 C = 4475.938869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.449 5.449 3 C -0.356 4.356 4 H 0.069 0.931 5 C 0.015 3.985 6 N -0.864 5.864 7 Si 0.967 3.033 8 H -0.266 1.266 9 H -0.273 1.273 10 H -0.280 1.280 11 C 0.431 3.569 12 O -0.631 6.631 13 C 0.054 3.946 14 H 0.103 0.897 15 C -0.128 4.128 16 C -0.111 4.111 17 C 0.037 3.963 18 N -0.498 5.498 19 C 0.052 3.948 20 C -0.106 4.106 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.104 4.104 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.276 0.724 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.031 0.969 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.020 0.980 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 -12.449 1.548 12.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.166 5.166 3 C -0.483 4.483 4 H 0.087 0.913 5 C -0.190 4.190 6 N -0.501 5.501 7 Si 0.791 3.209 8 H -0.192 1.192 9 H -0.199 1.199 10 H -0.205 1.205 11 C 0.221 3.779 12 O -0.521 6.521 13 C -0.057 4.057 14 H 0.120 0.880 15 C -0.167 4.167 16 C -0.149 4.149 17 C -0.090 4.090 18 N -0.223 5.223 19 C -0.056 4.056 20 C -0.143 4.143 21 C -0.152 4.152 22 C -0.152 4.152 23 C -0.142 4.142 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.049 0.951 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.039 0.961 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.361 -12.382 1.897 12.747 hybrid contribution 1.170 1.783 -0.778 2.270 sum -1.191 -10.599 1.119 10.724 Atomic orbital electron populations 1.21748 0.79909 1.00810 1.01063 1.43906 1.06285 1.04838 1.61601 1.19379 0.92002 0.83900 1.53036 0.91283 1.25774 0.96530 1.00513 0.96213 1.70287 1.16249 1.27996 1.35558 0.85348 0.78569 0.77592 0.79393 1.19163 1.19861 1.20496 1.20775 0.87770 0.85813 0.83510 1.90364 1.16475 1.87302 1.57911 1.22617 1.00338 0.90194 0.92569 0.87958 1.22761 1.01225 0.96340 0.96335 1.22733 1.03380 0.94325 0.94462 1.23166 0.96617 0.92716 0.96500 1.64285 1.42764 1.04490 1.10753 1.22908 0.95351 0.93858 0.93500 1.22395 1.01284 0.97586 0.93067 1.22438 0.97530 0.96967 0.98305 1.22287 0.99656 0.99305 0.93995 1.22045 0.99263 0.96179 0.96763 0.94507 0.91227 0.91291 0.91367 0.89042 0.93477 0.89034 0.88500 0.95090 0.87847 0.93135 0.89532 0.91769 0.92743 0.88818 0.92749 0.90385 0.96138 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.89 8.17 127.77 1.04 5.93 16 2 N -0.45 -23.40 2.42 -658.90 -1.60 -24.99 16 3 C -0.36 -20.57 9.40 84.04 0.79 -19.78 16 4 H 0.07 4.40 7.36 -2.91 -0.02 4.38 16 5 C 0.01 0.77 4.85 84.93 0.41 1.19 16 6 N -0.86 -45.38 10.80 21.66 0.23 -45.15 16 7 Si 0.97 42.63 29.67 68.60 2.04 44.67 16 8 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 C 0.43 21.28 3.30 87.66 0.29 21.57 16 12 O -0.63 -35.95 13.20 -3.05 -0.04 -35.99 16 13 C 0.05 2.05 2.95 44.51 0.13 2.18 16 14 H 0.10 3.70 5.28 -2.39 -0.01 3.68 16 15 C -0.13 -4.08 6.45 31.88 0.21 -3.88 16 16 C -0.11 -2.65 7.10 32.08 0.23 -2.42 16 17 C 0.04 1.04 5.72 86.78 0.50 1.53 16 18 N -0.50 -17.34 4.91 -835.65 -4.11 -21.44 16 19 C 0.05 2.04 1.88 45.64 0.09 2.12 16 20 C -0.11 -3.13 5.56 31.70 0.18 -2.95 16 21 C -0.11 -3.24 6.91 31.91 0.22 -3.02 16 22 C -0.11 -3.81 6.83 31.67 0.22 -3.60 16 23 C -0.10 -4.43 4.50 31.32 0.14 -4.29 16 24 H 0.04 1.73 7.43 -2.39 -0.02 1.71 16 25 H 0.07 3.33 6.07 -2.39 -0.01 3.31 16 26 H 0.07 2.59 5.53 -2.39 -0.01 2.57 16 27 H 0.28 13.46 8.31 -92.71 -0.77 12.69 16 28 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.05 1.78 7.56 -2.39 -0.02 1.76 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.03 0.95 7.77 -2.39 -0.02 0.94 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.05 2.47 5.21 -2.40 -0.01 2.45 16 35 H 0.09 2.27 7.92 -2.39 -0.02 2.25 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 40 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.02 1.06 7.32 -2.38 -0.02 1.04 16 42 H 0.05 2.34 5.80 -2.39 -0.01 2.32 16 Total: -1.00 -66.58 310.77 1.96 -64.62 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 1.00 Total: 23.68 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 4.44 Total: -5.40 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -5.47 Total: -91.59 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.04 Total: -35.99 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.04 Total: 44.67 kcal Total: -66.58 1.96 -64.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334919379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.231 kcal (2) G-P(sol) polarization free energy of solvation -66.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds