Wall clock time and date at job start Mon Mar 30 2020 00:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37099 * 119.99889 * 2 1 4 4 H 1.08006 * 119.99776 * 205.05000 * 3 2 1 5 5 C 1.38951 * 120.00090 * 25.04421 * 3 2 1 6 6 N 1.31414 * 119.99739 * 11.75903 * 5 3 2 7 7 Si 1.86800 * 119.99864 * 191.75501 * 5 3 2 8 8 H 1.48493 * 109.46809 * 90.00224 * 7 5 3 9 9 H 1.48502 * 109.47014 * 210.00385 * 7 5 3 10 10 H 1.48503 * 109.47327 * 330.00215 * 7 5 3 11 11 C 1.34779 * 120.00259 * 179.97438 * 2 1 3 12 12 O 1.21285 * 120.00155 * 180.02562 * 11 2 1 13 13 C 1.50709 * 119.99603 * 0.02562 * 11 2 1 14 14 C 1.53515 * 114.16556 * 179.97438 * 13 11 2 15 15 N 1.47477 * 87.93044 * 87.62450 * 14 13 11 16 16 C 1.46904 * 111.00117 * 138.70201 * 15 14 13 17 17 C 1.52997 * 109.47086 * 179.97438 * 16 15 14 18 18 C 1.53005 * 109.47038 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.46782 * 60.00492 * 18 17 16 20 20 C 1.53006 * 109.46866 * 299.99741 * 19 18 17 21 21 C 1.52992 * 109.47194 * 60.00293 * 20 19 18 22 22 C 1.47481 * 87.83690 * 27.00837 * 15 14 13 23 23 H 1.08993 * 109.47402 * 265.25787 * 1 2 3 24 24 H 1.08995 * 109.46958 * 25.25840 * 1 2 3 25 25 H 1.09009 * 109.46818 * 145.25751 * 1 2 3 26 26 H 0.96997 * 119.99502 * 179.97438 * 6 5 3 27 27 H 1.08999 * 113.25729 * 47.04972 * 13 11 2 28 28 H 1.08999 * 113.47649 * 332.85589 * 14 13 11 29 29 H 1.09001 * 113.47331 * 202.38885 * 14 13 11 30 30 H 1.09000 * 109.46956 * 299.99517 * 16 15 14 31 31 H 1.09006 * 109.47372 * 60.00352 * 17 16 15 32 32 H 1.08997 * 109.47715 * 299.99992 * 17 16 15 33 33 H 1.08996 * 109.46978 * 179.97438 * 18 17 16 34 34 H 1.09000 * 109.47274 * 299.99946 * 18 17 16 35 35 H 1.09000 * 109.47662 * 59.99691 * 19 18 17 36 36 H 1.09002 * 109.47139 * 180.02562 * 19 18 17 37 37 H 1.09005 * 109.46834 * 180.02562 * 20 19 18 38 38 H 1.08996 * 109.47122 * 299.99922 * 20 19 18 39 39 H 1.09005 * 109.47535 * 59.99625 * 21 20 19 40 40 H 1.09001 * 109.47595 * 179.97438 * 21 20 19 41 41 H 1.09001 * 113.47862 * 87.75942 * 22 15 14 42 42 H 1.09010 * 113.47401 * 218.22461 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1543 1.2313 -0.3960 5 6 1.5537 2.3341 0.5094 6 7 0.4370 2.2440 1.1962 7 14 2.3389 4.0038 0.2179 8 1 1.8090 4.5870 -1.0407 9 1 2.0204 4.9056 1.3540 10 1 3.8115 3.8461 0.1089 11 6 2.1390 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4724 0.0005 14 6 2.2841 -3.7169 0.0005 15 7 2.3024 -3.6380 1.4731 16 6 2.1799 -4.9731 2.0734 17 6 2.2034 -4.8507 3.5983 18 6 2.0751 -6.2412 4.2236 19 6 3.2428 -7.1166 3.7643 20 6 3.2193 -7.2390 2.2393 21 6 3.3475 -5.8486 1.6140 22 6 0.9898 -2.9698 1.3978 23 1 -0.3634 -0.0850 1.0241 24 1 -0.3633 0.9294 -0.4385 25 1 -0.3633 -0.8445 -0.5857 26 1 0.0206 3.0445 1.5521 27 1 0.5795 -2.5041 -0.7328 28 1 3.2596 -3.5481 -0.4556 29 1 1.7888 -4.6101 -0.3803 30 1 1.2402 -5.4278 1.7596 31 1 1.3712 -4.2274 3.9257 32 1 3.1431 -4.3962 3.9120 33 1 2.0923 -6.1541 5.3100 34 1 1.1351 -6.6953 3.9101 35 1 4.1827 -6.6625 4.0778 36 1 3.1512 -8.1074 4.2093 37 1 4.0509 -7.8631 1.9120 38 1 2.2794 -7.6932 1.9257 39 1 4.2875 -5.3944 1.9277 40 1 3.3312 -5.9358 0.5276 41 1 0.1492 -3.6636 1.3900 42 1 0.8685 -2.1677 2.1261 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336287227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:30 Heat of formation + Delta-G solvation = -26.237243 kcal Electronic energy + Delta-G solvation = -21070.430856 eV Core-core repulsion = 18050.308106 eV Total energy + Delta-G solvation = -3020.122750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.87913 -39.76137 -38.12831 -36.51167 -33.63904 -32.23080 -31.72442 -28.73736 -27.71280 -26.93024 -26.20216 -23.35842 -23.19583 -21.96335 -20.66432 -19.64945 -18.79059 -18.07443 -17.26129 -16.73026 -16.21542 -15.98379 -15.65714 -15.33948 -15.21435 -14.75966 -14.67704 -14.23294 -13.69990 -13.60016 -13.40788 -13.14836 -13.12309 -13.08189 -12.67449 -12.63213 -12.45344 -12.20160 -12.13657 -12.00101 -11.96334 -11.63227 -11.40890 -11.02529 -10.97278 -10.84858 -10.27443 -9.65631 -9.61043 -8.31660 -5.96959 1.37556 1.40061 1.52580 2.05141 2.28842 2.91721 3.08422 3.19519 3.58223 3.75573 3.80541 3.85622 4.06632 4.21186 4.23218 4.31247 4.39557 4.44865 4.55794 4.58145 4.62216 4.63616 4.72564 4.76736 4.85589 4.97667 5.02010 5.07629 5.10460 5.17968 5.27421 5.28585 5.30651 5.34308 5.39871 5.45914 5.54178 5.58827 6.12737 6.30483 6.54706 7.21753 7.52684 8.11863 8.71627 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035891 B = 0.004234 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.961226 B = 6610.931395 C = 6707.072419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.466 5.466 3 C -0.343 4.343 4 H 0.066 0.934 5 C -0.002 4.002 6 N -0.898 5.898 7 Si 0.988 3.012 8 H -0.263 1.263 9 H -0.273 1.273 10 H -0.279 1.279 11 C 0.465 3.535 12 O -0.624 6.624 13 C -0.134 4.134 14 C 0.032 3.968 15 N -0.490 5.490 16 C 0.051 3.949 17 C -0.107 4.107 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.110 4.110 21 C -0.112 4.112 22 C 0.029 3.971 23 H 0.039 0.961 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.272 0.728 27 H 0.123 0.877 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.828 -17.697 2.110 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.185 5.185 3 C -0.472 4.472 4 H 0.084 0.916 5 C -0.204 4.204 6 N -0.537 5.537 7 Si 0.811 3.189 8 H -0.188 1.188 9 H -0.198 1.198 10 H -0.204 1.204 11 C 0.254 3.746 12 O -0.511 6.511 13 C -0.155 4.155 14 C -0.097 4.097 15 N -0.212 5.212 16 C -0.057 4.057 17 C -0.145 4.145 18 C -0.149 4.149 19 C -0.157 4.157 20 C -0.148 4.148 21 C -0.150 4.150 22 C -0.100 4.100 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.140 0.860 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.827 -17.251 2.587 17.672 hybrid contribution -0.125 0.995 -0.299 1.047 sum -2.952 -16.256 2.288 16.679 Atomic orbital electron populations 1.21385 0.79435 1.00611 1.00276 1.43777 1.06684 1.04468 1.63551 1.19577 1.00652 0.86472 1.40457 0.91581 1.26061 0.97108 1.02853 0.94351 1.70061 1.19696 1.30669 1.33255 0.85021 0.78182 0.77211 0.78441 1.18795 1.19837 1.20372 1.20308 0.87487 0.85569 0.81215 1.90461 1.16252 1.87821 1.56520 1.22457 0.99978 0.92507 1.00593 1.23547 0.99964 0.95853 0.90309 1.69106 1.26207 1.16895 1.09024 1.22329 0.98593 0.89138 0.95678 1.21445 1.01103 0.97944 0.93992 1.21497 0.99302 0.93929 1.00174 1.21560 0.98195 1.00175 0.95791 1.21491 1.02744 0.95208 0.95382 1.21565 0.97426 0.95728 1.00280 1.23678 0.93023 0.98703 0.94634 0.94213 0.92627 0.91473 0.91820 0.85963 0.91643 0.87665 0.91839 0.92935 0.93681 0.91340 0.90878 0.93008 0.90296 0.91016 0.90813 0.93566 0.91799 0.87324 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.64 8.46 127.77 1.08 6.73 16 2 N -0.47 -24.97 3.01 -658.88 -1.98 -26.95 16 3 C -0.34 -20.37 9.23 84.04 0.78 -19.60 16 4 H 0.07 4.21 7.46 -2.91 -0.02 4.19 16 5 C 0.00 -0.13 5.06 84.93 0.43 0.30 16 6 N -0.90 -48.99 10.83 21.66 0.23 -48.75 16 7 Si 0.99 43.94 29.57 68.60 2.03 45.97 16 8 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 C 0.46 23.79 7.08 87.66 0.62 24.41 16 12 O -0.62 -37.53 15.69 -3.05 -0.05 -37.58 16 13 C -0.13 -4.84 3.45 -11.19 -0.04 -4.88 16 14 C 0.03 1.03 5.78 83.58 0.48 1.52 16 15 N -0.49 -16.68 6.04 -902.45 -5.45 -22.13 16 16 C 0.05 1.30 1.60 44.91 0.07 1.37 16 17 C -0.11 -2.68 5.42 30.59 0.17 -2.51 16 18 C -0.11 -2.01 5.92 30.60 0.18 -1.83 16 19 C -0.12 -2.00 5.92 30.60 0.18 -1.82 16 20 C -0.11 -1.87 5.92 30.59 0.18 -1.69 16 21 C -0.11 -2.61 5.10 30.59 0.16 -2.46 16 22 C 0.03 0.93 7.06 83.57 0.59 1.52 16 23 H 0.04 1.83 7.85 -2.39 -0.02 1.81 16 24 H 0.05 2.65 6.78 -2.39 -0.02 2.64 16 25 H 0.07 2.36 6.39 -2.38 -0.02 2.35 16 26 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 27 H 0.12 3.61 6.91 -2.39 -0.02 3.59 16 28 H 0.07 2.50 7.51 -2.39 -0.02 2.48 16 29 H 0.11 2.46 7.66 -2.39 -0.02 2.44 16 30 H 0.06 1.37 7.52 -2.39 -0.02 1.35 16 31 H 0.05 1.37 8.04 -2.38 -0.02 1.36 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.06 1.44 7.03 -2.39 -0.02 1.42 16 41 H 0.11 2.57 7.54 -2.39 -0.02 2.56 16 42 H 0.06 2.20 8.11 -2.38 -0.02 2.18 16 Total: -1.00 -71.85 324.69 0.64 -71.20 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.98 Total: 17.17 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 4.88 Total: 1.06 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -7.20 Total: -97.84 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.05 Total: -37.58 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.85 0.64 -71.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336287227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.966 kcal (2) G-P(sol) polarization free energy of solvation -71.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds