Wall clock time and date at job start Mon Mar 30 2020 00:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35310 * 125.86968 * 2 1 4 4 C 1.35355 * 106.17527 * 180.26893 * 3 2 1 5 5 C 1.50700 * 126.75084 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47242 * 73.32687 * 5 4 3 7 7 C 1.46901 * 110.99859 * 150.39228 * 6 5 4 8 8 C 1.50701 * 109.46919 * 195.87326 * 7 6 5 9 9 H 1.08000 * 120.00273 * 5.12228 * 8 7 6 10 10 C 1.37878 * 120.00161 * 185.12437 * 8 7 6 11 11 N 1.31521 * 119.99393 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00287 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47117 * 59.99451 * 12 10 8 14 14 H 1.48493 * 109.47091 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47003 * 300.00005 * 12 10 8 16 16 C 1.46899 * 110.99795 * 274.34277 * 6 5 4 17 17 C 1.52998 * 109.47447 * 317.20613 * 16 6 5 18 18 C 1.53004 * 109.47120 * 85.51901 * 17 16 6 19 19 C 1.53003 * 109.47251 * 205.51859 * 17 16 6 20 20 C 1.52998 * 109.47173 * 325.51767 * 17 16 6 21 21 N 1.33766 * 106.49785 * 359.97438 * 4 3 2 22 22 N 1.28638 * 108.88765 * 359.97438 * 21 4 3 23 23 H 1.08998 * 109.46780 * 269.71018 * 1 2 3 24 24 H 1.09002 * 109.46879 * 29.71297 * 1 2 3 25 25 H 1.08998 * 109.47217 * 149.71238 * 1 2 3 26 26 H 1.07994 * 126.91347 * 0.22645 * 3 2 1 27 27 H 1.08998 * 109.46858 * 193.32982 * 5 4 3 28 28 H 1.09007 * 109.46750 * 313.32776 * 5 4 3 29 29 H 1.09002 * 109.47025 * 315.86900 * 7 6 5 30 30 H 1.08994 * 109.47309 * 75.86985 * 7 6 5 31 31 H 0.97000 * 119.99495 * 180.02562 * 11 10 8 32 32 H 1.09004 * 109.47121 * 77.20998 * 16 6 5 33 33 H 1.09000 * 109.47195 * 197.20566 * 16 6 5 34 34 H 1.08997 * 109.46749 * 55.87687 * 18 17 16 35 35 H 1.08997 * 109.46977 * 175.88251 * 18 17 16 36 36 H 1.09006 * 109.46699 * 295.87868 * 18 17 16 37 37 H 1.08997 * 109.47072 * 60.00006 * 19 17 16 38 38 H 1.09000 * 109.47016 * 180.02562 * 19 17 16 39 39 H 1.08999 * 109.46864 * 300.00149 * 19 17 16 40 40 H 1.09003 * 109.46822 * 40.66842 * 20 17 16 41 41 H 1.09005 * 109.47405 * 160.66772 * 20 17 16 42 42 H 1.08997 * 109.47278 * 280.67117 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5322 0.6403 -0.0061 5 6 4.7881 1.4733 -0.0080 6 7 4.9814 2.0709 1.3199 7 6 6.4086 2.2711 1.6044 8 6 6.5981 2.5086 3.0805 9 1 5.7565 2.4289 3.7527 10 6 7.8457 2.8277 3.5729 11 7 8.8706 2.9244 2.7543 12 14 8.0807 3.1214 5.4025 13 1 7.7011 1.8976 6.1531 14 1 9.5041 3.4470 5.6728 15 1 7.2235 4.2539 5.8362 16 6 4.2382 3.3321 1.4429 17 6 4.4042 4.1491 0.1600 18 6 3.3582 3.7069 -0.8653 19 6 4.2150 5.6347 0.4734 20 6 5.8056 3.9229 -0.4109 21 7 3.4576 -0.6952 -0.0089 22 7 2.2192 -1.0431 -0.0043 23 1 -0.3633 -0.0052 1.0276 24 1 -0.3633 0.8926 -0.5094 25 1 -0.3633 -0.8874 -0.5183 26 1 1.9382 2.1280 0.0034 27 1 5.6426 0.8415 -0.2501 28 1 4.6983 2.2642 -0.7528 29 1 6.9667 1.3841 1.3046 30 1 6.7724 3.1347 1.0478 31 1 9.7485 3.1485 3.1007 32 1 3.1815 3.1170 1.6025 33 1 4.6249 3.9008 2.2885 34 1 2.3626 3.7994 -0.4315 35 1 3.4286 4.3378 -1.7514 36 1 3.5384 2.6685 -1.1434 37 1 4.9602 5.9497 1.2039 38 1 4.3329 6.2167 -0.4406 39 1 3.2167 5.7959 0.8802 40 1 6.0713 2.8701 -0.3150 41 1 5.8194 4.2067 -1.4633 42 1 6.5243 4.5306 0.1387 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336701663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:04 Heat of formation + Delta-G solvation = 159.454717 kcal Electronic energy + Delta-G solvation = -21659.191384 eV Core-core repulsion = 18679.413593 eV Total energy + Delta-G solvation = -2979.777791 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.95914 -39.65730 -34.62140 -33.86470 -32.52245 -31.25842 -28.17087 -27.69277 -27.61457 -26.65896 -25.94888 -23.75911 -21.74173 -21.17747 -20.14563 -18.52980 -16.98693 -16.44337 -16.35182 -15.49895 -14.92180 -14.75982 -14.30320 -14.02787 -13.66747 -13.38280 -13.22371 -13.05201 -12.71380 -12.18030 -12.06615 -11.74033 -11.29919 -11.19370 -11.10044 -11.05802 -10.86192 -10.72000 -10.53798 -10.49131 -10.29733 -9.97079 -9.85363 -9.80154 -9.58339 -9.15789 -8.78087 -8.33794 -7.01421 -5.95220 -3.94887 1.85997 2.55473 2.92741 3.37017 3.41339 3.44937 4.43375 4.48755 4.73064 4.84962 4.99417 5.10435 5.14475 5.18022 5.28897 5.38850 5.40681 5.51294 5.67568 5.79876 5.84531 5.91635 6.00056 6.03522 6.14785 6.27310 6.28245 6.37425 6.44111 6.56948 6.60997 6.68574 6.79648 6.84249 6.90162 7.33526 7.47859 7.89157 8.17893 8.26970 8.62595 8.85087 9.11887 9.67685 11.14539 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.019268 B = 0.006103 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.871037 B = 4586.567750 C = 5310.282973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.302 5.302 3 C -0.060 4.060 4 C 0.015 3.985 5 C 0.087 3.913 6 N -0.526 5.526 7 C 0.165 3.835 8 C -0.501 4.501 9 H 0.059 0.941 10 C 0.056 3.944 11 N -0.899 5.899 12 Si 0.894 3.106 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.279 1.279 16 C 0.071 3.929 17 C -0.101 4.101 18 C -0.168 4.168 19 C -0.134 4.134 20 C -0.170 4.170 21 N -0.262 5.262 22 N -0.100 5.100 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.190 0.810 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.024 0.976 30 H 0.036 0.964 31 H 0.260 0.740 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.039 0.961 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.877 2.564 -8.549 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.097 5.097 3 C -0.210 4.210 4 C -0.124 4.124 5 C -0.042 4.042 6 N -0.249 5.249 7 C 0.041 3.959 8 C -0.540 4.540 9 H 0.077 0.923 10 C -0.145 4.145 11 N -0.539 5.539 12 Si 0.722 3.278 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.204 1.204 16 C -0.058 4.058 17 C -0.103 4.103 18 C -0.225 4.225 19 C -0.192 4.192 20 C -0.226 4.226 21 N -0.129 5.129 22 N -0.079 5.079 23 H 0.106 0.894 24 H 0.113 0.887 25 H 0.115 0.885 26 H 0.206 0.794 27 H 0.099 0.901 28 H 0.117 0.883 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.058 0.942 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.841 0.704 -8.183 17.844 hybrid contribution 0.201 1.915 0.615 2.021 sum -15.640 2.619 -7.568 17.571 Atomic orbital electron populations 1.22143 0.73626 1.05290 1.04648 1.47186 1.08905 1.05267 1.48323 1.23756 0.91290 0.94400 1.11545 1.22248 0.95565 0.90890 1.03673 1.21469 0.91955 0.96540 0.94209 1.62066 1.14740 1.23908 1.24173 1.20485 0.80633 0.97494 0.97304 1.21131 0.94200 1.45929 0.92701 0.92274 1.24931 0.96002 0.95885 0.97679 1.69938 1.00112 1.49428 1.34463 0.86627 0.76786 0.78609 0.85760 1.20330 1.21456 1.20437 1.22251 0.97601 0.89834 0.96129 1.21181 0.95523 0.96241 0.97310 1.22820 0.98137 1.02705 0.98790 1.21826 1.01271 0.95102 1.00976 1.22830 0.95982 1.04705 0.99089 1.75057 1.08860 1.12693 1.16270 1.78236 0.96809 1.12292 1.20581 0.89445 0.88738 0.88467 0.79369 0.90145 0.88307 0.95791 0.94688 0.93015 0.93052 0.89637 0.93124 0.93131 0.89895 0.92171 0.93487 0.93297 0.89205 0.94157 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 11.39 59.85 0.68 1.28 16 2 N -0.30 -4.05 3.74 -68.06 -0.25 -4.31 16 3 C -0.06 -0.84 9.48 -17.05 -0.16 -1.01 16 4 C 0.01 0.27 6.41 -82.78 -0.53 -0.27 16 5 C 0.09 1.59 3.72 -4.98 -0.02 1.58 16 6 N -0.53 -11.00 4.52 -237.51 -1.07 -12.08 16 7 C 0.16 4.12 3.84 -4.97 -0.02 4.10 16 8 C -0.50 -13.92 8.29 -34.44 -0.29 -14.20 16 9 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 10 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 12 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 C 0.07 1.27 4.87 -3.83 -0.02 1.25 16 17 C -0.10 -1.51 0.77 -154.51 -0.12 -1.62 16 18 C -0.17 -2.03 6.49 37.16 0.24 -1.79 16 19 C -0.13 -1.82 8.25 37.16 0.31 -1.52 16 20 C -0.17 -2.86 6.22 37.16 0.23 -2.63 16 21 N -0.26 -5.16 12.41 33.29 0.41 -4.75 16 22 N -0.10 -1.73 13.17 60.35 0.79 -0.94 16 23 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.19 2.12 4.75 -52.49 -0.25 1.87 16 27 H 0.08 1.59 7.46 -51.93 -0.39 1.20 16 28 H 0.10 1.58 2.08 -51.93 -0.11 1.47 16 29 H 0.02 0.66 7.62 -51.93 -0.40 0.27 16 30 H 0.04 0.88 4.02 -51.93 -0.21 0.67 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.05 0.84 6.85 -51.93 -0.36 0.48 16 33 H 0.09 1.75 6.85 -51.93 -0.36 1.39 16 34 H 0.05 0.52 6.61 -51.93 -0.34 0.18 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 1.06 3.19 -51.93 -0.17 0.90 16 37 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.67 2.84 -51.93 -0.15 1.52 16 41 H 0.04 0.59 7.99 -51.93 -0.42 0.17 16 42 H 0.07 1.30 7.05 -51.93 -0.37 0.94 16 LS Contribution 313.56 15.07 4.73 4.73 Total: -1.00 -32.80 313.56 -5.47 -38.27 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.00 Total: 1.22 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 0.21 Total: -13.34 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.62 Total: -47.64 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.80 -5.47 -38.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336701663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.728 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds