Wall clock time and date at job start Mon Mar 30 2020 00:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35310 * 125.86968 * 2 1 4 4 C 1.35355 * 106.17527 * 180.26893 * 3 2 1 5 5 C 1.50700 * 126.75084 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47242 * 73.32687 * 5 4 3 7 7 C 1.46901 * 110.99859 * 150.39228 * 6 5 4 8 8 C 1.50701 * 109.46919 * 195.87326 * 7 6 5 9 9 H 1.08000 * 120.00273 * 5.12228 * 8 7 6 10 10 C 1.37878 * 120.00161 * 185.12437 * 8 7 6 11 11 N 1.31521 * 119.99393 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00287 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47117 * 59.99451 * 12 10 8 14 14 H 1.48493 * 109.47091 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47003 * 300.00005 * 12 10 8 16 16 C 1.46899 * 110.99795 * 274.34277 * 6 5 4 17 17 C 1.52998 * 109.47447 * 317.20613 * 16 6 5 18 18 C 1.53004 * 109.47120 * 85.51901 * 17 16 6 19 19 C 1.53003 * 109.47251 * 205.51859 * 17 16 6 20 20 C 1.52998 * 109.47173 * 325.51767 * 17 16 6 21 21 N 1.33766 * 106.49785 * 359.97438 * 4 3 2 22 22 N 1.28638 * 108.88765 * 359.97438 * 21 4 3 23 23 H 1.08998 * 109.46780 * 269.71018 * 1 2 3 24 24 H 1.09002 * 109.46879 * 29.71297 * 1 2 3 25 25 H 1.08998 * 109.47217 * 149.71238 * 1 2 3 26 26 H 1.07994 * 126.91347 * 0.22645 * 3 2 1 27 27 H 1.08998 * 109.46858 * 193.32982 * 5 4 3 28 28 H 1.09007 * 109.46750 * 313.32776 * 5 4 3 29 29 H 1.09002 * 109.47025 * 315.86900 * 7 6 5 30 30 H 1.08994 * 109.47309 * 75.86985 * 7 6 5 31 31 H 0.97000 * 119.99495 * 180.02562 * 11 10 8 32 32 H 1.09004 * 109.47121 * 77.20998 * 16 6 5 33 33 H 1.09000 * 109.47195 * 197.20566 * 16 6 5 34 34 H 1.08997 * 109.46749 * 55.87687 * 18 17 16 35 35 H 1.08997 * 109.46977 * 175.88251 * 18 17 16 36 36 H 1.09006 * 109.46699 * 295.87868 * 18 17 16 37 37 H 1.08997 * 109.47072 * 60.00006 * 19 17 16 38 38 H 1.09000 * 109.47016 * 180.02562 * 19 17 16 39 39 H 1.08999 * 109.46864 * 300.00149 * 19 17 16 40 40 H 1.09003 * 109.46822 * 40.66842 * 20 17 16 41 41 H 1.09005 * 109.47405 * 160.66772 * 20 17 16 42 42 H 1.08997 * 109.47278 * 280.67117 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5322 0.6403 -0.0061 5 6 4.7881 1.4733 -0.0080 6 7 4.9814 2.0709 1.3199 7 6 6.4086 2.2711 1.6044 8 6 6.5981 2.5086 3.0805 9 1 5.7565 2.4289 3.7527 10 6 7.8457 2.8277 3.5729 11 7 8.8706 2.9244 2.7543 12 14 8.0807 3.1214 5.4025 13 1 7.7011 1.8976 6.1531 14 1 9.5041 3.4470 5.6728 15 1 7.2235 4.2539 5.8362 16 6 4.2382 3.3321 1.4429 17 6 4.4042 4.1491 0.1600 18 6 3.3582 3.7069 -0.8653 19 6 4.2150 5.6347 0.4734 20 6 5.8056 3.9229 -0.4109 21 7 3.4576 -0.6952 -0.0089 22 7 2.2192 -1.0431 -0.0043 23 1 -0.3633 -0.0052 1.0276 24 1 -0.3633 0.8926 -0.5094 25 1 -0.3633 -0.8874 -0.5183 26 1 1.9382 2.1280 0.0034 27 1 5.6426 0.8415 -0.2501 28 1 4.6983 2.2642 -0.7528 29 1 6.9667 1.3841 1.3046 30 1 6.7724 3.1347 1.0478 31 1 9.7485 3.1485 3.1007 32 1 3.1815 3.1170 1.6025 33 1 4.6249 3.9008 2.2885 34 1 2.3626 3.7994 -0.4315 35 1 3.4286 4.3378 -1.7514 36 1 3.5384 2.6685 -1.1434 37 1 4.9602 5.9497 1.2039 38 1 4.3329 6.2167 -0.4406 39 1 3.2167 5.7959 0.8802 40 1 6.0713 2.8701 -0.3150 41 1 5.8194 4.2067 -1.4633 42 1 6.5243 4.5306 0.1387 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336701663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:03 Heat of formation + Delta-G solvation = 135.465561 kcal Electronic energy + Delta-G solvation = -21660.231632 eV Core-core repulsion = 18679.413593 eV Total energy + Delta-G solvation = -2980.818039 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.15400 -41.07306 -35.76109 -35.43846 -34.29732 -32.71394 -29.38778 -29.25397 -28.68175 -28.04320 -27.21986 -25.49233 -22.99761 -22.62650 -21.59904 -19.76963 -18.53717 -17.93841 -17.51815 -16.84406 -16.68950 -16.16570 -15.83423 -15.36964 -15.10867 -14.56659 -14.18136 -14.04788 -14.00457 -13.64877 -13.27840 -13.02194 -12.89877 -12.73581 -12.65224 -12.43790 -12.32921 -12.28254 -12.17086 -11.85400 -11.75031 -11.51458 -11.39065 -11.11190 -11.10451 -10.83593 -10.50461 -10.04825 -8.65996 -8.11096 -6.20171 0.73546 1.40024 1.43068 1.50265 1.57687 1.70548 2.43463 3.18600 3.36818 3.67933 3.82074 3.97109 3.99747 4.09670 4.17787 4.26397 4.39348 4.43813 4.63141 4.67167 4.68265 4.77246 4.78681 4.90462 4.98362 5.00017 5.04663 5.16044 5.21351 5.28216 5.28766 5.37179 5.40925 5.52271 5.55806 5.61508 5.74936 5.80734 6.18965 6.50878 6.74473 6.95967 7.47091 7.61935 8.96402 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.019268 B = 0.006103 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.871037 B = 4586.567750 C = 5310.282973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.288 5.288 3 C -0.035 4.035 4 C -0.014 4.014 5 C 0.097 3.903 6 N -0.541 5.541 7 C 0.181 3.819 8 C -0.516 4.516 9 H 0.051 0.949 10 C 0.005 3.995 11 N -0.931 5.931 12 Si 0.959 3.041 13 H -0.277 1.277 14 H -0.283 1.283 15 H -0.266 1.266 16 C 0.072 3.928 17 C -0.096 4.096 18 C -0.163 4.163 19 C -0.130 4.130 20 C -0.169 4.169 21 N -0.314 5.314 22 N -0.124 5.124 23 H 0.103 0.897 24 H 0.134 0.866 25 H 0.109 0.891 26 H 0.226 0.774 27 H 0.047 0.953 28 H 0.127 0.873 29 H -0.018 1.018 30 H 0.033 0.967 31 H 0.262 0.738 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.296 4.229 -8.931 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.082 5.082 3 C -0.187 4.187 4 C -0.154 4.154 5 C -0.032 4.032 6 N -0.264 5.264 7 C 0.056 3.944 8 C -0.555 4.555 9 H 0.069 0.931 10 C -0.193 4.193 11 N -0.572 5.572 12 Si 0.784 3.216 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.191 1.191 16 C -0.056 4.056 17 C -0.097 4.097 18 C -0.219 4.219 19 C -0.187 4.187 20 C -0.225 4.225 21 N -0.180 5.180 22 N -0.103 5.103 23 H 0.122 0.878 24 H 0.152 0.848 25 H 0.127 0.873 26 H 0.242 0.758 27 H 0.065 0.935 28 H 0.144 0.856 29 H 0.000 1.000 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -19.310 2.347 -8.572 21.257 hybrid contribution 1.166 1.390 0.699 1.944 sum -18.143 3.737 -7.873 20.128 Atomic orbital electron populations 1.22754 0.69773 1.07970 1.06538 1.47677 1.10938 1.04120 1.45486 1.24095 0.89871 0.95791 1.08926 1.22186 0.96634 0.90531 1.06044 1.21402 0.91601 0.96728 0.93456 1.61927 1.12173 1.25925 1.26364 1.20140 0.83179 0.95214 0.95916 1.21440 0.94178 1.45809 0.94044 0.93064 1.25753 0.95682 0.95602 1.02215 1.70062 1.00498 1.50224 1.36425 0.85596 0.77048 0.78674 0.80233 1.20294 1.20817 1.19094 1.22269 0.97999 0.88586 0.96768 1.21115 0.95157 0.96917 0.96546 1.22720 0.98290 1.02282 0.98638 1.21780 1.01776 0.93891 1.01301 1.22741 0.96854 1.02510 1.00418 1.74993 1.10555 1.14197 1.18277 1.78127 0.96521 1.13732 1.21889 0.87833 0.84822 0.87259 0.75827 0.93472 0.85596 1.00006 0.94996 0.92926 0.90492 0.92810 0.90053 0.90982 0.90834 0.94795 0.91643 0.90969 0.91576 0.91516 0.94636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 11.39 127.77 1.46 2.13 16 2 N -0.29 -6.88 3.74 -369.24 -1.38 -8.26 16 3 C -0.04 -0.88 9.48 83.49 0.79 -0.09 16 4 C -0.01 -0.49 6.41 41.60 0.27 -0.23 16 5 C 0.10 3.62 3.72 85.56 0.32 3.94 16 6 N -0.54 -23.32 4.52 -905.36 -4.09 -27.41 16 7 C 0.18 9.62 3.84 85.56 0.33 9.94 16 8 C -0.52 -29.88 8.29 25.60 0.21 -29.66 16 9 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 10 C 0.01 0.30 5.46 84.65 0.46 0.77 16 11 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 12 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 C 0.07 2.53 4.87 86.30 0.42 2.95 16 17 C -0.10 -2.67 0.77 -52.18 -0.04 -2.71 16 18 C -0.16 -3.20 6.49 71.98 0.47 -2.73 16 19 C -0.13 -3.20 8.25 71.98 0.59 -2.60 16 20 C -0.17 -5.72 6.22 71.98 0.45 -5.27 16 21 N -0.31 -12.62 12.41 -48.60 -0.60 -13.23 16 22 N -0.12 -4.19 13.17 37.02 0.49 -3.71 16 23 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 25 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.23 3.78 4.75 -2.91 -0.01 3.77 16 27 H 0.05 2.03 7.46 -2.39 -0.02 2.01 16 28 H 0.13 3.97 2.08 -2.38 0.00 3.96 16 29 H -0.02 -1.09 7.62 -2.39 -0.02 -1.11 16 30 H 0.03 1.73 4.02 -2.39 -0.01 1.72 16 31 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.08 2.28 6.85 -2.38 -0.02 2.26 16 33 H 0.05 2.22 6.85 -2.39 -0.02 2.21 16 34 H 0.08 1.14 6.61 -2.39 -0.02 1.12 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.62 3.19 -2.38 -0.01 1.62 16 37 H 0.03 1.00 8.10 -2.39 -0.02 0.98 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 2.57 2.84 -2.39 -0.01 2.57 16 41 H 0.07 1.86 7.99 -2.38 -0.02 1.84 16 42 H 0.03 1.41 7.05 -2.39 -0.02 1.39 16 Total: -1.00 -76.88 313.56 3.48 -73.41 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.03 Total: 11.43 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 5.72 Total: -23.57 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -5.30 Total: -108.80 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -76.88 3.48 -73.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336701663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.872 kcal (2) G-P(sol) polarization free energy of solvation -76.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds