Wall clock time and date at job start Mon Mar 30 2020 00:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00467 * 2 1 4 4 C 1.53001 * 112.85107 * 295.11075 * 3 2 1 5 5 C 1.53002 * 109.46578 * 288.59658 * 4 3 2 6 6 N 1.46911 * 109.46824 * 174.53291 * 5 4 3 7 7 C 1.46903 * 110.99784 * 190.00290 * 6 5 4 8 8 C 1.50696 * 109.47021 * 167.23735 * 7 6 5 9 9 H 1.08003 * 119.99849 * 3.44872 * 8 7 6 10 10 C 1.37876 * 120.00075 * 183.44813 * 8 7 6 11 11 N 1.31513 * 119.99685 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00041 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47151 * 60.00694 * 12 10 8 14 14 H 1.48506 * 109.47276 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47493 * 300.00378 * 12 10 8 16 16 C 1.46898 * 111.00037 * 66.04366 * 6 5 4 17 17 C 1.53003 * 109.46968 * 65.69906 * 16 6 5 18 18 C 1.47202 * 109.47240 * 184.71618 * 17 16 6 19 19 N 7.80935 * 115.23848 * 330.70958 * 2 1 3 20 20 C 1.53782 * 113.68688 * 66.37126 * 3 2 1 21 21 C 1.53785 * 87.07971 * 89.13259 * 20 3 2 22 22 C 1.53780 * 113.61700 * 163.90974 * 3 2 1 23 23 H 1.08995 * 109.47465 * 56.72973 * 1 2 3 24 24 H 1.09001 * 109.47272 * 176.73630 * 1 2 3 25 25 H 1.09005 * 109.46252 * 296.73218 * 1 2 3 26 26 H 1.09004 * 109.47124 * 168.59826 * 4 3 2 27 27 H 1.08998 * 109.47375 * 48.59524 * 4 3 2 28 28 H 1.08994 * 109.47410 * 294.52893 * 5 4 3 29 29 H 1.08994 * 109.47570 * 54.53606 * 5 4 3 30 30 H 1.09007 * 109.46398 * 287.23238 * 7 6 5 31 31 H 1.08994 * 109.47268 * 47.23102 * 7 6 5 32 32 H 0.97005 * 119.99993 * 179.97438 * 11 10 8 33 33 H 1.08993 * 109.47047 * 185.69643 * 16 6 5 34 34 H 1.09000 * 109.47336 * 305.69937 * 16 6 5 35 35 H 1.09002 * 109.47102 * 304.71802 * 17 16 6 36 36 H 1.08996 * 109.47096 * 64.71608 * 17 16 6 37 37 H 1.09002 * 113.61364 * 203.67741 * 20 3 2 38 38 H 1.08993 * 113.62073 * 334.58386 * 20 3 2 39 39 H 1.09002 * 113.61051 * 270.88186 * 21 20 3 40 40 H 1.08992 * 113.69535 * 139.99546 * 21 20 3 41 41 H 1.08997 * 113.61548 * 25.34934 * 22 3 2 42 42 H 1.08995 * 113.61680 * 156.25525 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7055 2.0915 -1.2767 5 6 2.4931 1.4935 -2.4441 6 7 2.1023 2.1626 -3.6922 7 6 2.6551 1.4631 -4.8599 8 6 1.9915 1.9747 -6.1124 9 1 1.2754 2.7811 -6.0534 10 6 2.2984 1.4133 -7.3337 11 7 3.1699 0.4310 -7.4054 12 14 1.4752 2.0470 -8.8862 13 1 1.7937 3.4866 -9.0631 14 1 1.9727 1.2820 -10.0578 15 1 0.0045 1.8757 -8.7721 16 6 2.5093 3.5740 -3.6826 17 6 4.0367 3.6643 -3.6752 18 6 4.4443 5.0734 -3.5514 19 7 4.7588 6.1608 -3.4559 20 6 1.7460 2.0993 1.2902 21 6 3.0327 1.4686 1.8485 22 6 3.4977 1.3174 0.3905 23 1 -0.3634 0.5637 -0.8592 24 1 -0.3634 -1.0260 -0.0585 25 1 -0.3632 0.4623 0.9179 26 1 1.9943 3.1336 -1.1394 27 1 0.6384 2.0356 -1.4918 28 1 3.5601 1.6366 -2.2738 29 1 2.2771 0.4279 -2.5202 30 1 3.7284 1.6444 -4.9173 31 1 2.4719 0.3931 -4.7627 32 1 3.3855 0.0358 -8.2647 33 1 2.1204 4.0704 -4.5716 34 1 2.1123 4.0607 -2.7918 35 1 4.4301 3.0969 -2.8317 36 1 4.4295 3.2528 -4.6048 37 1 1.8106 3.1795 1.1591 38 1 0.8436 1.7891 1.8168 39 1 2.8684 0.5176 2.3553 40 1 3.6417 2.1592 2.4317 41 1 4.0092 0.3759 0.1908 42 1 4.0411 2.1838 0.0135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339054251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:22 Heat of formation + Delta-G solvation = 3.532880 kcal Electronic energy + Delta-G solvation = -20803.481378 eV Core-core repulsion = 17784.649558 eV Total energy + Delta-G solvation = -3018.831820 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.09482 -37.79104 -35.95895 -35.53752 -32.77598 -31.39156 -29.80633 -27.10938 -26.66940 -25.64414 -24.48675 -23.45451 -21.55968 -19.66577 -19.29233 -17.43045 -16.29505 -16.21032 -15.98776 -15.15309 -15.09478 -14.72705 -14.56815 -14.21830 -13.90298 -13.59886 -13.22492 -12.89132 -12.71938 -12.41148 -12.15078 -11.99088 -11.78859 -11.58595 -11.54522 -11.22289 -11.08131 -11.00087 -10.85983 -10.72493 -10.64291 -10.56432 -10.12019 -9.99787 -9.83737 -9.38452 -9.12519 -8.46145 -7.34571 -6.06266 -4.07785 3.06319 3.09048 3.32231 3.36928 3.39575 3.68869 4.28746 4.40008 4.45589 4.57707 4.75952 4.78521 5.09893 5.29681 5.33624 5.35658 5.39387 5.47165 5.52654 5.58579 5.64559 5.65690 5.72439 5.76236 5.78264 5.82821 6.01595 6.05715 6.09913 6.20829 6.26978 6.46040 6.52253 6.62354 7.19158 7.23951 7.32692 7.75032 7.84977 8.03370 8.10673 8.46599 8.99207 9.57011 11.04076 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.005320 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.473037 B = 5261.783094 C = 6379.786187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.094 3.906 4 C -0.130 4.130 5 C 0.055 3.945 6 N -0.528 5.528 7 C 0.186 3.814 8 C -0.509 4.509 9 H 0.063 0.937 10 C 0.058 3.942 11 N -0.897 5.897 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.276 1.276 16 C 0.071 3.929 17 C -0.075 4.075 18 C 0.224 3.776 19 N -0.463 5.463 20 C -0.166 4.166 21 C -0.137 4.137 22 C -0.124 4.124 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.029 0.971 29 H 0.075 0.925 30 H -0.001 1.001 31 H 0.034 0.966 32 H 0.262 0.738 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 0.353 15.974 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.280 6.280 3 C 0.054 3.946 4 C -0.168 4.168 5 C -0.073 4.073 6 N -0.250 5.250 7 C 0.062 3.938 8 C -0.548 4.548 9 H 0.081 0.919 10 C -0.144 4.144 11 N -0.537 5.537 12 Si 0.723 3.277 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.202 1.202 16 C -0.059 4.059 17 C -0.116 4.116 18 C -0.093 4.093 19 N -0.141 5.141 20 C -0.203 4.203 21 C -0.174 4.174 22 C -0.161 4.161 23 H 0.070 0.930 24 H 0.102 0.898 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.016 0.984 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.141 0.859 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.893 1.638 15.933 16.129 hybrid contribution 0.146 0.003 -0.962 0.973 sum -1.746 1.641 14.971 15.162 Atomic orbital electron populations 1.22742 0.81280 1.02595 1.00205 1.87890 1.19597 1.25728 1.94768 1.22530 0.94870 0.83870 0.93337 1.22038 1.02141 0.98848 0.93785 1.22033 0.96256 0.99376 0.89654 1.62410 1.59102 1.00743 1.02778 1.19854 0.93309 0.94470 0.86189 1.21100 1.24375 1.18682 0.90606 0.91930 1.24949 0.95282 0.95023 0.99110 1.69933 1.33467 1.24766 1.25488 0.86614 0.79877 0.78821 0.82426 1.20304 1.21407 1.20192 1.22076 0.88714 0.92538 1.02597 1.20268 1.01753 0.83658 1.05968 1.29369 0.92497 0.95232 0.92218 1.81140 1.10038 1.12819 1.10142 1.23554 0.98677 1.00301 0.97799 1.22770 0.97082 1.00988 0.96559 1.22967 0.94487 1.03027 0.95654 0.93048 0.89814 0.94461 0.91253 0.90715 0.95301 0.90671 0.98351 0.94783 0.92830 0.89354 0.91905 0.88213 0.85939 0.89401 0.91290 0.90056 0.91607 0.90445 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.63 101.05 1.07 1.38 16 2 O -0.36 -4.77 10.46 -35.23 -0.37 -5.14 16 3 C 0.09 1.10 0.72 -89.81 -0.06 1.04 16 4 C -0.13 -1.67 4.52 -26.73 -0.12 -1.79 16 5 C 0.06 0.86 4.49 -3.82 -0.02 0.84 16 6 N -0.53 -9.77 4.68 -236.07 -1.10 -10.88 16 7 C 0.19 4.30 4.50 -4.98 -0.02 4.28 16 8 C -0.51 -13.18 8.63 -34.44 -0.30 -13.48 16 9 H 0.06 1.61 7.16 -52.48 -0.38 1.23 16 10 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 11 N -0.90 -25.31 13.29 55.43 0.74 -24.57 16 12 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 C 0.07 1.15 4.94 -3.82 -0.02 1.14 16 17 C -0.07 -1.10 4.99 -29.52 -0.15 -1.25 16 18 C 0.22 3.54 15.43 -20.76 -0.32 3.22 16 19 N -0.46 -8.22 18.54 42.15 0.78 -7.44 16 20 C -0.17 -1.63 7.21 -25.92 -0.19 -1.82 16 21 C -0.14 -1.30 8.02 -25.91 -0.21 -1.50 16 22 C -0.12 -1.33 6.61 -25.92 -0.17 -1.50 16 23 H 0.05 0.58 6.47 -51.93 -0.34 0.25 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.35 6.85 -51.93 -0.36 -0.01 16 26 H 0.07 0.83 6.50 -51.93 -0.34 0.49 16 27 H 0.07 1.02 6.47 -51.93 -0.34 0.69 16 28 H 0.03 0.42 5.62 -51.93 -0.29 0.13 16 29 H 0.07 1.31 7.82 -51.93 -0.41 0.90 16 30 H 0.00 -0.03 5.92 -51.92 -0.31 -0.33 16 31 H 0.03 0.88 7.87 -51.93 -0.41 0.47 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.09 1.60 7.03 -51.93 -0.36 1.23 16 34 H 0.06 0.89 6.34 -51.93 -0.33 0.56 16 35 H 0.10 1.27 6.22 -51.93 -0.32 0.95 16 36 H 0.12 2.04 6.45 -51.93 -0.34 1.71 16 37 H 0.09 0.80 7.96 -51.93 -0.41 0.39 16 38 H 0.07 0.65 6.83 -51.93 -0.35 0.30 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 334.46 15.07 5.04 5.04 Total: -1.00 -28.90 334.46 -7.06 -35.95 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.52 Total: -0.84 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -0.60 Total: -7.99 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.41 Total: -42.89 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.37 Total: -5.14 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.90 -7.06 -35.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339054251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.486 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds