Wall clock time and date at job start Mon Mar 30 2020 00:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00467 * 2 1 4 4 C 1.53001 * 112.85107 * 295.11075 * 3 2 1 5 5 C 1.53002 * 109.46578 * 288.59658 * 4 3 2 6 6 N 1.46911 * 109.46824 * 174.53291 * 5 4 3 7 7 C 1.46903 * 110.99784 * 190.00290 * 6 5 4 8 8 C 1.50696 * 109.47021 * 167.23735 * 7 6 5 9 9 H 1.08003 * 119.99849 * 3.44872 * 8 7 6 10 10 C 1.37876 * 120.00075 * 183.44813 * 8 7 6 11 11 N 1.31513 * 119.99685 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00041 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47151 * 60.00694 * 12 10 8 14 14 H 1.48506 * 109.47276 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47493 * 300.00378 * 12 10 8 16 16 C 1.46898 * 111.00037 * 66.04366 * 6 5 4 17 17 C 1.53003 * 109.46968 * 65.69906 * 16 6 5 18 18 C 1.47202 * 109.47240 * 184.71618 * 17 16 6 19 19 N 7.80935 * 115.23848 * 330.70958 * 2 1 3 20 20 C 1.53782 * 113.68688 * 66.37126 * 3 2 1 21 21 C 1.53785 * 87.07971 * 89.13259 * 20 3 2 22 22 C 1.53780 * 113.61700 * 163.90974 * 3 2 1 23 23 H 1.08995 * 109.47465 * 56.72973 * 1 2 3 24 24 H 1.09001 * 109.47272 * 176.73630 * 1 2 3 25 25 H 1.09005 * 109.46252 * 296.73218 * 1 2 3 26 26 H 1.09004 * 109.47124 * 168.59826 * 4 3 2 27 27 H 1.08998 * 109.47375 * 48.59524 * 4 3 2 28 28 H 1.08994 * 109.47410 * 294.52893 * 5 4 3 29 29 H 1.08994 * 109.47570 * 54.53606 * 5 4 3 30 30 H 1.09007 * 109.46398 * 287.23238 * 7 6 5 31 31 H 1.08994 * 109.47268 * 47.23102 * 7 6 5 32 32 H 0.97005 * 119.99993 * 179.97438 * 11 10 8 33 33 H 1.08993 * 109.47047 * 185.69643 * 16 6 5 34 34 H 1.09000 * 109.47336 * 305.69937 * 16 6 5 35 35 H 1.09002 * 109.47102 * 304.71802 * 17 16 6 36 36 H 1.08996 * 109.47096 * 64.71608 * 17 16 6 37 37 H 1.09002 * 113.61364 * 203.67741 * 20 3 2 38 38 H 1.08993 * 113.62073 * 334.58386 * 20 3 2 39 39 H 1.09002 * 113.61051 * 270.88186 * 21 20 3 40 40 H 1.08992 * 113.69535 * 139.99546 * 21 20 3 41 41 H 1.08997 * 113.61548 * 25.34934 * 22 3 2 42 42 H 1.08995 * 113.61680 * 156.25525 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7055 2.0915 -1.2767 5 6 2.4931 1.4935 -2.4441 6 7 2.1023 2.1626 -3.6922 7 6 2.6551 1.4631 -4.8599 8 6 1.9915 1.9747 -6.1124 9 1 1.2754 2.7811 -6.0534 10 6 2.2984 1.4133 -7.3337 11 7 3.1699 0.4310 -7.4054 12 14 1.4752 2.0470 -8.8862 13 1 1.7937 3.4866 -9.0631 14 1 1.9727 1.2820 -10.0578 15 1 0.0045 1.8757 -8.7721 16 6 2.5093 3.5740 -3.6826 17 6 4.0367 3.6643 -3.6752 18 6 4.4443 5.0734 -3.5514 19 7 4.7588 6.1608 -3.4559 20 6 1.7460 2.0993 1.2902 21 6 3.0327 1.4686 1.8485 22 6 3.4977 1.3174 0.3905 23 1 -0.3634 0.5637 -0.8592 24 1 -0.3634 -1.0260 -0.0585 25 1 -0.3632 0.4623 0.9179 26 1 1.9943 3.1336 -1.1394 27 1 0.6384 2.0356 -1.4918 28 1 3.5601 1.6366 -2.2738 29 1 2.2771 0.4279 -2.5202 30 1 3.7284 1.6444 -4.9173 31 1 2.4719 0.3931 -4.7627 32 1 3.3855 0.0358 -8.2647 33 1 2.1204 4.0704 -4.5716 34 1 2.1123 4.0607 -2.7918 35 1 4.4301 3.0969 -2.8317 36 1 4.4295 3.2528 -4.6048 37 1 1.8106 3.1795 1.1591 38 1 0.8436 1.7891 1.8168 39 1 2.8684 0.5176 2.3553 40 1 3.6417 2.1592 2.4317 41 1 4.0092 0.3759 0.1908 42 1 4.0411 2.1838 0.0135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339054251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:21 Heat of formation + Delta-G solvation = -14.021774 kcal Electronic energy + Delta-G solvation = -20804.242605 eV Core-core repulsion = 17784.649558 eV Total energy + Delta-G solvation = -3019.593047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.00691 -39.18189 -37.33201 -36.41745 -34.73927 -32.60009 -31.30135 -28.43343 -27.88040 -26.55387 -25.73156 -24.91371 -22.78152 -21.00635 -20.22095 -18.80625 -18.20214 -17.21341 -17.07111 -16.44829 -16.21449 -16.10569 -15.88975 -15.28066 -15.09145 -14.90768 -14.46124 -14.35754 -13.94593 -13.70821 -13.43119 -13.16530 -13.03700 -12.89477 -12.88518 -12.71471 -12.46356 -12.40774 -12.08086 -11.97232 -11.83712 -11.72328 -11.60206 -11.30199 -11.15879 -10.87588 -10.51020 -10.14930 -8.87150 -8.11651 -6.18972 1.46321 1.47148 1.54425 1.77019 1.80168 2.45765 2.83461 3.00084 3.22548 3.38880 3.69796 3.76151 3.98646 4.08138 4.17124 4.26011 4.37228 4.44442 4.54154 4.54816 4.62514 4.70199 4.83188 4.84822 4.88432 4.94496 5.00142 5.07352 5.12193 5.16870 5.20865 5.29628 5.39612 5.44845 5.46515 5.53396 5.76065 6.16525 6.41916 6.44866 6.59649 6.73696 6.97065 7.50005 8.98046 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.005320 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.473037 B = 5261.783094 C = 6379.786187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.384 6.384 3 C 0.084 3.916 4 C -0.121 4.121 5 C 0.060 3.940 6 N -0.536 5.536 7 C 0.200 3.800 8 C -0.516 4.516 9 H 0.062 0.938 10 C 0.008 3.992 11 N -0.931 5.931 12 Si 0.954 3.046 13 H -0.271 1.271 14 H -0.288 1.288 15 H -0.272 1.272 16 C 0.073 3.927 17 C -0.062 4.062 18 C 0.246 3.754 19 N -0.492 5.492 20 C -0.157 4.157 21 C -0.130 4.130 22 C -0.128 4.128 23 H 0.041 0.959 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.049 0.951 30 H -0.007 1.007 31 H 0.000 1.000 32 H 0.262 0.738 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.343 1.619 17.317 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.304 6.304 3 C 0.044 3.956 4 C -0.159 4.159 5 C -0.068 4.068 6 N -0.259 5.259 7 C 0.074 3.926 8 C -0.554 4.554 9 H 0.080 0.920 10 C -0.190 4.190 11 N -0.572 5.572 12 Si 0.780 3.220 13 H -0.196 1.196 14 H -0.214 1.214 15 H -0.198 1.198 16 C -0.057 4.057 17 C -0.103 4.103 18 C -0.071 4.071 19 N -0.171 5.171 20 C -0.195 4.195 21 C -0.168 4.168 22 C -0.166 4.166 23 H 0.060 0.940 24 H 0.109 0.891 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.011 0.989 31 H 0.018 0.982 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.145 0.855 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.213 2.918 17.295 17.679 hybrid contribution 0.223 -0.421 -1.340 1.422 sum -1.990 2.497 15.956 16.272 Atomic orbital electron populations 1.22841 0.80390 1.03220 1.00637 1.87864 1.20746 1.26858 1.94886 1.22674 0.95750 0.83604 0.93544 1.21973 1.01036 0.99748 0.93106 1.22010 0.97610 0.97939 0.89216 1.62264 1.59359 1.01762 1.02479 1.19496 0.92847 0.92805 0.87425 1.21456 1.23929 1.18237 0.91788 0.92019 1.25705 0.95924 0.95301 1.02114 1.70048 1.35010 1.26112 1.26039 0.85670 0.78957 0.78436 0.78942 1.19582 1.21378 1.19771 1.22052 0.89655 0.90874 1.03077 1.20144 1.00669 0.83327 1.06191 1.29317 0.91615 0.94916 0.91216 1.81172 1.10997 1.13657 1.11259 1.23534 0.99027 1.00719 0.96194 1.22729 0.96983 1.01158 0.95883 1.23060 0.93783 1.03001 0.96727 0.93992 0.89082 0.92716 0.89486 0.91634 0.93870 0.93205 0.98924 0.98204 0.92955 0.91387 0.88963 0.85532 0.87772 0.88108 0.90908 0.90528 0.89984 0.91606 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.63 113.37 1.20 1.73 16 2 O -0.38 -9.85 10.46 -148.98 -1.56 -11.41 16 3 C 0.08 1.82 0.72 -10.27 -0.01 1.82 16 4 C -0.12 -2.87 4.52 30.60 0.14 -2.74 16 5 C 0.06 1.82 4.49 86.30 0.39 2.20 16 6 N -0.54 -19.61 4.68 -900.79 -4.22 -23.83 16 7 C 0.20 9.42 4.50 85.56 0.38 9.80 16 8 C -0.52 -26.93 8.63 25.60 0.22 -26.71 16 9 H 0.06 3.17 7.16 -2.91 -0.02 3.15 16 10 C 0.01 0.42 5.46 84.65 0.46 0.88 16 11 N -0.93 -53.43 13.29 21.45 0.28 -53.15 16 12 Si 0.95 42.93 29.54 68.60 2.03 44.95 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 14 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 C 0.07 2.26 4.94 86.30 0.43 2.69 16 17 C -0.06 -1.71 4.99 28.79 0.14 -1.57 16 18 C 0.25 7.28 15.43 89.44 1.38 8.66 16 19 N -0.49 -16.62 18.54 20.01 0.37 -16.25 16 20 C -0.16 -2.64 7.21 31.12 0.22 -2.41 16 21 C -0.13 -2.13 8.02 31.12 0.25 -1.88 16 22 C -0.13 -2.47 6.61 31.12 0.21 -2.27 16 23 H 0.04 0.93 6.47 -2.39 -0.02 0.92 16 24 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 25 H 0.05 0.92 6.85 -2.38 -0.02 0.91 16 26 H 0.09 1.76 6.50 -2.39 -0.02 1.75 16 27 H 0.07 1.70 6.47 -2.39 -0.02 1.68 16 28 H 0.04 1.18 5.62 -2.39 -0.01 1.17 16 29 H 0.05 1.76 7.82 -2.39 -0.02 1.75 16 30 H -0.01 -0.33 5.92 -2.38 -0.01 -0.34 16 31 H 0.00 -0.01 7.87 -2.39 -0.02 -0.03 16 32 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 33 H 0.07 2.39 7.03 -2.39 -0.02 2.38 16 34 H 0.09 2.33 6.34 -2.39 -0.02 2.31 16 35 H 0.13 2.87 6.22 -2.39 -0.01 2.85 16 36 H 0.10 3.41 6.45 -2.39 -0.02 3.39 16 37 H 0.10 1.45 7.96 -2.39 -0.02 1.43 16 38 H 0.07 1.18 6.83 -2.39 -0.02 1.16 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.10 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -62.11 334.46 3.34 -58.78 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.01 Total: 10.69 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 5.42 Total: -9.79 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -3.56 Total: -93.22 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -1.56 Total: -11.41 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -62.11 3.34 -58.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339054251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.757 kcal (2) G-P(sol) polarization free energy of solvation -62.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds