Wall clock time and date at job start Mon Mar 30 2020 00:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47190 * 2 1 4 4 C 1.53002 * 109.46963 * 179.97438 * 3 2 1 5 5 C 1.50710 * 109.46907 * 180.02562 * 4 3 2 6 6 N 1.30290 * 126.34827 * 270.04518 * 5 4 3 7 7 N 1.28530 * 110.05234 * 179.69164 * 6 5 4 8 8 C 1.31220 * 109.85739 * 0.45122 * 7 6 5 9 9 N 1.38573 * 126.46742 * 179.81955 * 8 7 6 10 10 C 1.46906 * 110.99827 * 123.64439 * 9 8 7 11 11 C 1.46902 * 111.00412 * 359.69429 * 9 8 7 12 12 H 1.08998 * 109.47116 * 59.99505 * 11 9 8 13 13 C 1.53002 * 109.46789 * 299.99447 * 11 9 8 14 14 C 1.50702 * 109.47561 * 180.02562 * 11 9 8 15 15 H 1.08004 * 119.99412 * 359.97438 * 14 11 9 16 16 C 1.37872 * 120.00353 * 179.97438 * 14 11 9 17 17 N 1.31516 * 119.99829 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00236 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47091 * 89.99485 * 18 16 14 20 20 H 1.48493 * 109.47196 * 209.99968 * 18 16 14 21 21 H 1.48508 * 109.46638 * 330.00053 * 18 16 14 22 22 N 1.36447 * 107.05744 * 359.56179 * 8 7 6 23 23 C 1.46495 * 127.13707 * 180.28321 * 22 8 7 24 24 H 1.09010 * 109.46974 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47051 * 299.99916 * 1 2 3 26 26 H 1.08995 * 109.47114 * 60.00136 * 1 2 3 27 27 H 1.09007 * 109.47283 * 240.00127 * 2 1 3 28 28 H 1.09003 * 109.46842 * 120.00412 * 2 1 3 29 29 H 1.08998 * 109.47055 * 60.00087 * 3 2 1 30 30 H 1.08994 * 109.47501 * 299.99890 * 3 2 1 31 31 H 1.08998 * 109.46938 * 60.00291 * 4 3 2 32 32 H 1.08995 * 109.47453 * 299.99933 * 4 3 2 33 33 H 1.09001 * 109.46544 * 59.99935 * 10 9 8 34 34 H 1.09001 * 109.47272 * 179.97438 * 10 9 8 35 35 H 1.09000 * 109.47033 * 299.99991 * 10 9 8 36 36 H 1.09005 * 109.46778 * 60.00269 * 13 11 9 37 37 H 1.08999 * 109.47254 * 179.97438 * 13 11 9 38 38 H 1.08993 * 109.47392 * 300.00418 * 13 11 9 39 39 H 0.96997 * 119.99699 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.47149 * 89.99841 * 23 22 8 41 41 H 1.09010 * 109.46925 * 209.99798 * 23 22 8 42 42 H 1.09003 * 109.47257 * 329.99594 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 7 4.3294 3.5919 -1.0478 7 7 4.7347 4.7570 -0.6866 8 6 4.7672 4.8314 0.6231 9 7 5.1544 5.9282 1.3763 10 6 4.0903 6.3308 2.3056 11 6 5.5495 7.0480 0.5115 12 1 4.7073 7.3359 -0.1177 13 6 6.7234 6.6205 -0.3719 14 6 5.9639 8.2194 1.3641 15 1 5.9361 8.1401 2.4409 16 6 6.3785 9.3923 0.7697 17 7 6.4128 9.4886 -0.5415 18 14 6.8914 10.8447 1.8267 19 1 8.3474 10.7630 2.1072 20 1 6.5961 12.1095 1.1069 21 1 6.1384 10.8159 3.1064 22 7 4.3421 3.6270 1.1031 23 6 4.2030 3.2338 2.5074 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9287 0.8908 33 1 3.8657 5.5049 2.9805 34 1 4.4206 7.1932 2.8846 35 1 3.1952 6.5928 1.7414 36 1 6.4241 5.7730 -0.9887 37 1 7.0163 7.4511 -1.0140 38 1 7.5655 6.3325 0.2572 39 1 6.7049 10.3137 -0.9596 40 1 3.1994 3.4782 2.8554 41 1 4.3692 2.1606 2.6024 42 1 4.9369 3.7698 3.1092 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349717350.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:34 Heat of formation + Delta-G solvation = 62.050983 kcal Electronic energy + Delta-G solvation = -20872.697111 eV Core-core repulsion = 17888.695577 eV Total energy + Delta-G solvation = -2984.001534 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.90658 -38.94033 -36.89560 -35.90849 -34.76844 -32.48691 -31.19004 -29.76210 -28.47836 -27.33212 -26.03487 -25.09160 -23.58792 -22.04899 -21.49201 -21.15425 -18.55410 -17.69502 -17.48397 -17.04526 -16.54713 -16.07885 -15.71021 -15.63502 -14.86487 -14.66836 -14.58166 -14.17863 -14.05396 -13.80393 -13.60183 -13.15447 -12.99507 -12.82856 -12.71990 -12.33998 -12.30740 -12.19964 -12.14735 -12.04004 -11.99626 -11.78346 -11.47942 -11.40293 -11.03761 -10.92400 -10.55790 -10.44053 -9.00776 -8.13498 -6.29987 0.89127 1.39682 1.45945 1.46469 1.56612 1.92298 2.41179 3.00147 3.17756 3.43508 3.78760 3.94761 4.05416 4.11435 4.26797 4.28912 4.34432 4.45106 4.47990 4.61997 4.68704 4.74621 4.79224 4.82179 4.86159 4.96145 5.02444 5.12042 5.14022 5.16147 5.30328 5.32301 5.40912 5.43705 5.51795 5.59250 5.64571 5.95377 6.04169 6.16053 6.59056 6.80168 7.39136 7.92235 8.93337 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.040094 B = 0.004129 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.184335 B = 6778.868012 C = 7042.362568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.108 4.108 4 C -0.019 4.019 5 C 0.174 3.826 6 N -0.338 5.338 7 N -0.369 5.369 8 C 0.362 3.638 9 N -0.456 5.456 10 C 0.035 3.965 11 C 0.244 3.756 12 H -0.027 1.027 13 C -0.128 4.128 14 C -0.530 4.530 15 H 0.076 0.924 16 C 0.011 3.989 17 N -0.920 5.920 18 Si 0.972 3.028 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.258 1.258 22 N -0.485 5.485 23 C 0.066 3.934 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.014 0.986 36 H 0.042 0.958 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.263 0.737 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.319 -18.757 9.249 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.147 4.147 4 C -0.059 4.059 5 C -0.095 4.095 6 N -0.176 5.176 7 N -0.213 5.213 8 C 0.004 3.996 9 N -0.179 5.179 10 C -0.112 4.112 11 C 0.138 3.862 12 H -0.010 1.010 13 C -0.186 4.186 14 C -0.568 4.568 15 H 0.094 0.906 16 C -0.189 4.189 17 N -0.558 5.558 18 Si 0.797 3.203 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.182 1.182 22 N -0.181 5.181 23 C -0.075 4.075 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.132 0.868 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.032 0.968 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.141 0.859 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.731 -18.323 7.982 21.810 hybrid contribution -0.167 1.213 0.718 1.420 sum -8.898 -17.110 8.701 21.158 Atomic orbital electron populations 1.21787 0.95797 1.02125 1.01551 1.21481 0.95916 0.94659 1.03302 1.21543 0.92718 0.98612 1.01850 1.20234 0.96287 0.83382 1.05969 1.25505 1.03535 0.98686 0.81750 1.73831 1.17590 0.99584 1.26633 1.74649 1.23958 1.13784 1.08945 1.23156 0.98181 0.88533 0.89736 1.59001 1.35300 1.05025 1.18618 1.22528 0.90372 1.03134 0.95182 1.18927 0.92672 0.85140 0.89451 1.00983 1.21771 0.97567 1.00193 0.99106 1.21391 1.45324 0.96519 0.93586 0.90612 1.25851 0.95223 1.01614 0.96200 1.70099 1.47606 1.27658 1.10469 0.85340 0.78631 0.77599 0.78745 1.20137 1.21204 1.18195 1.46300 1.51661 1.09900 1.10230 1.22492 1.04783 1.04501 0.75729 0.91629 0.92712 0.93663 0.91322 0.89996 0.91893 0.93581 0.88137 0.86829 0.88592 0.88900 0.96763 0.93894 0.92094 0.96091 0.92767 0.88490 0.85882 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.34 5.93 30.59 0.18 -1.16 16 3 C -0.11 -1.83 5.20 30.59 0.16 -1.67 16 4 C -0.02 -0.36 5.59 29.85 0.17 -0.19 16 5 C 0.17 5.53 7.32 137.64 1.01 6.54 16 6 N -0.34 -14.61 12.18 -49.53 -0.60 -15.21 16 7 N -0.37 -18.35 9.01 -58.01 -0.52 -18.87 16 8 C 0.36 15.66 6.75 260.12 1.76 17.42 16 9 N -0.46 -20.50 4.69 -710.98 -3.33 -23.83 16 10 C 0.03 1.26 9.08 127.69 1.16 2.42 16 11 C 0.24 13.37 1.73 44.17 0.08 13.45 16 12 H -0.03 -1.74 8.11 -2.39 -0.02 -1.76 16 13 C -0.13 -7.23 8.77 71.98 0.63 -6.60 16 14 C -0.53 -29.19 7.88 25.60 0.20 -28.99 16 15 H 0.08 3.91 6.41 -2.91 -0.02 3.89 16 16 C 0.01 0.59 5.30 84.65 0.45 1.04 16 17 N -0.92 -55.11 11.32 21.45 0.24 -54.87 16 18 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 22 N -0.48 -15.26 3.21 -538.18 -1.73 -16.98 16 23 C 0.07 1.19 9.33 127.77 1.19 2.38 16 24 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.04 0.62 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.11 1.32 7.27 -2.39 -0.02 1.30 16 33 H 0.10 2.55 5.40 -2.39 -0.01 2.54 16 34 H 0.09 3.47 6.10 -2.39 -0.01 3.46 16 35 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.04 2.42 5.44 -2.38 -0.01 2.41 16 37 H 0.06 3.72 6.07 -2.39 -0.01 3.70 16 38 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.10 1.34 7.85 -2.39 -0.02 1.32 16 41 H 0.12 1.29 7.25 -2.38 -0.02 1.27 16 42 H 0.09 1.76 7.57 -2.39 -0.02 1.75 16 Total: -1.00 -76.32 331.25 4.77 -71.55 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.99 Total: 9.44 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 7.70 Total: 3.50 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -5.94 Total: -129.76 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -76.32 4.77 -71.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349717350.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.601 kcal (2) G-P(sol) polarization free energy of solvation -76.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds