Wall clock time and date at job start Mon Mar 30 2020 01:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46882 * 2 1 4 4 C 1.53003 * 109.47153 * 240.00377 * 2 1 3 5 5 C 1.50698 * 109.47220 * 59.99598 * 4 2 1 6 6 H 1.08001 * 120.00221 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00092 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99961 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00081 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47043 * 89.99906 * 9 7 5 11 11 H 1.48503 * 109.47265 * 210.00096 * 9 7 5 12 12 H 1.48504 * 109.46962 * 329.99972 * 9 7 5 13 13 C 1.52997 * 109.47313 * 120.00182 * 2 1 3 14 14 N 1.46906 * 109.47023 * 65.88481 * 13 2 1 15 15 C 1.49045 * 110.99598 * 162.08658 * 14 13 2 16 16 C 1.53158 * 103.46919 * 146.47476 * 15 14 13 17 17 H 1.09002 * 110.90241 * 77.03733 * 16 15 14 18 18 C 1.51849 * 116.23367 * 204.82726 * 16 15 14 19 19 C 1.53904 * 106.69205 * 173.63942 * 18 16 15 20 20 C 1.52544 * 111.50832 * 304.67094 * 19 18 16 21 21 N 1.47765 * 111.87248 * 52.96776 * 20 19 18 22 22 C 1.45092 * 108.49135 * 301.48322 * 21 20 19 23 23 H 1.09000 * 109.69834 * 307.90453 * 22 21 20 24 24 C 1.48636 * 110.99877 * 282.57534 * 14 13 2 25 25 H 1.08996 * 109.46869 * 292.53324 * 1 2 3 26 26 H 1.08992 * 109.47493 * 52.54005 * 1 2 3 27 27 H 1.09006 * 109.46956 * 172.53848 * 1 2 3 28 28 H 1.09004 * 109.46959 * 182.51172 * 3 2 1 29 29 H 1.08996 * 109.47558 * 302.51217 * 3 2 1 30 30 H 1.08995 * 109.47337 * 62.51601 * 3 2 1 31 31 H 1.08998 * 109.47349 * 179.97438 * 4 2 1 32 32 H 1.09007 * 109.47110 * 299.99949 * 4 2 1 33 33 H 0.97002 * 120.00306 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46978 * 305.88453 * 13 2 1 35 35 H 1.09005 * 109.47082 * 185.88551 * 13 2 1 36 36 H 1.08997 * 110.62340 * 264.97237 * 15 14 13 37 37 H 1.08996 * 110.62100 * 27.98287 * 15 14 13 38 38 H 1.08995 * 110.00630 * 292.94089 * 18 16 15 39 39 H 1.08997 * 110.00300 * 54.24953 * 18 16 15 40 40 H 1.09006 * 109.07358 * 65.19337 * 19 18 16 41 41 H 1.09004 * 109.07238 * 184.14341 * 19 18 16 42 42 H 1.09001 * 109.00203 * 173.58698 * 20 19 18 43 43 H 1.09010 * 108.99753 * 292.35014 * 20 19 18 44 44 H 1.00898 * 110.99856 * 63.70346 * 21 20 19 45 45 H 1.08997 * 110.17248 * 0.08151 * 24 14 13 46 46 H 1.09002 * 110.16614 * 121.87825 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6256 -1.5519 -3.8528 9 14 1.2481 0.3989 -5.2572 10 1 2.2270 1.4399 -5.6614 11 1 1.0823 -0.5801 -6.3614 12 1 -0.0596 1.0374 -4.9612 13 6 2.0400 -0.7213 1.2492 14 7 1.6697 -2.1412 1.1802 15 6 2.4896 -2.9533 2.1235 16 6 1.5269 -4.0558 2.5748 17 1 1.4199 -4.8184 1.8033 18 6 1.8168 -4.6891 3.9241 19 6 0.6426 -5.6361 4.2293 20 6 -0.6951 -4.9054 4.1702 21 7 -0.8698 -4.1790 2.8953 22 6 0.2193 -3.2310 2.7529 23 1 0.2918 -2.6171 3.6507 24 6 0.2363 -2.3351 1.5221 25 1 -0.3633 0.3938 0.9492 26 1 -0.3634 0.6250 -0.8157 27 1 -0.3633 -1.0190 -0.1335 28 1 3.1290 1.4428 -0.0450 29 1 1.6403 1.9692 -0.8665 30 1 1.7139 1.9431 0.9116 31 1 3.1300 -0.7208 -1.2496 32 1 1.6767 -1.7489 -1.2494 33 1 2.8600 -1.8833 -4.7338 34 1 1.5932 -0.2719 2.1360 35 1 3.1250 -0.6309 1.3034 36 1 3.3514 -3.3819 1.6121 37 1 2.8074 -2.3496 2.9736 38 1 2.7486 -5.2528 3.8789 39 1 1.8848 -3.9178 4.6911 40 1 0.6389 -6.4456 3.4993 41 1 0.7747 -6.0575 5.2259 42 1 -1.5011 -5.6313 4.2785 43 1 -0.7474 -4.1938 4.9943 44 1 -0.8967 -4.8187 2.1155 45 1 -0.2291 -1.3759 1.7490 46 1 -0.2846 -2.8204 0.6967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353683428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:30 Heat of formation + Delta-G solvation = -3.965440 kcal Electronic energy + Delta-G solvation = -21745.773499 eV Core-core repulsion = 18862.449622 eV Total energy + Delta-G solvation = -2883.323877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.32438 -37.55295 -35.05981 -32.44988 -32.20438 -30.26926 -28.07341 -26.99390 -26.07674 -25.82940 -23.29662 -22.52798 -21.55087 -20.51419 -20.44220 -17.75516 -16.24579 -15.83735 -15.67005 -14.95203 -14.82752 -14.55105 -14.25898 -13.65174 -13.33045 -13.19975 -12.84560 -12.59439 -12.33702 -12.16736 -12.05689 -11.91594 -11.72451 -11.33072 -11.28888 -10.91128 -10.88229 -10.77620 -10.73231 -10.64045 -10.55851 -10.25321 -10.17290 -9.95062 -9.52217 -8.88814 -8.65628 -8.34315 -8.18158 -7.74174 -5.82287 -3.81591 3.39854 3.46441 3.49218 3.98336 4.26106 4.55969 4.58807 4.65367 4.84620 4.96584 5.11867 5.18493 5.37524 5.45142 5.51263 5.52808 5.56449 5.69343 5.70170 5.72935 5.80454 5.87147 5.96206 6.00087 6.05343 6.16814 6.21783 6.27133 6.31207 6.36555 6.45999 6.55759 6.82210 6.83612 6.92551 7.12716 7.23374 7.29554 7.38590 7.43824 7.65235 7.93028 8.14259 8.30915 8.65237 9.26207 9.79824 11.28851 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.027901 B = 0.004604 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.303126 B = 6080.226204 C = 6279.044688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.058 4.058 3 C -0.127 4.127 4 C 0.047 3.953 5 C -0.508 4.508 6 H 0.054 0.946 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.882 3.118 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.064 3.936 14 N -0.506 5.506 15 C 0.051 3.949 16 C -0.142 4.142 17 H 0.085 0.915 18 C -0.106 4.106 19 C -0.155 4.155 20 C 0.055 3.945 21 N -0.664 5.664 22 C 0.060 3.940 23 H 0.076 0.924 24 C 0.051 3.949 25 H 0.023 0.977 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.026 0.974 31 H 0.007 0.993 32 H 0.034 0.966 33 H 0.256 0.744 34 H 0.021 0.979 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.342 0.658 45 H 0.072 0.928 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.368 -5.621 16.973 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.059 4.059 3 C -0.184 4.184 4 C 0.010 3.990 5 C -0.547 4.547 6 H 0.072 0.928 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.710 3.290 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.201 1.201 13 C -0.064 4.064 14 N -0.230 5.230 15 C -0.077 4.077 16 C -0.163 4.163 17 H 0.103 0.897 18 C -0.144 4.144 19 C -0.194 4.194 20 C -0.075 4.075 21 N -0.292 5.292 22 C -0.052 4.052 23 H 0.094 0.906 24 C -0.077 4.077 25 H 0.042 0.958 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.025 0.975 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.160 0.840 45 H 0.090 0.910 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.700 -5.407 16.572 17.820 hybrid contribution 0.483 0.112 -0.324 0.593 sum -3.217 -5.295 16.248 17.389 Atomic orbital electron populations 1.21989 0.96071 1.01903 0.98754 1.20605 0.94846 0.94299 0.96117 1.21736 1.00303 0.96526 0.99870 1.18992 0.95355 0.96035 0.88625 1.21376 1.30486 1.11622 0.91167 0.92812 1.24978 0.95609 0.95110 0.98762 1.69983 1.37554 1.23145 1.22886 0.86766 0.79176 0.79462 0.83584 1.20994 1.21485 1.20068 1.22422 0.99712 0.87110 0.97122 1.64358 1.01830 1.08577 1.48218 1.22745 0.96720 0.93947 0.94287 1.22777 0.98114 0.98242 0.97184 0.89656 1.21414 0.97926 0.98646 0.96386 1.22215 0.96246 0.98922 1.02027 1.22057 0.95583 0.97074 0.92797 1.60892 1.44919 1.18536 1.04815 1.22502 0.88739 0.94246 0.99705 0.90562 1.22797 0.90688 0.98933 0.95316 0.95754 0.92573 0.92216 0.93687 0.91779 0.95461 0.97498 0.94724 0.93416 0.96126 0.91777 0.90281 0.94071 0.91758 0.91928 0.92044 0.91604 0.90825 0.91329 0.83979 0.91018 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 6.55 37.16 0.24 -2.26 16 2 C -0.06 -1.18 0.61 -154.51 -0.09 -1.28 16 3 C -0.13 -2.43 8.17 37.16 0.30 -2.13 16 4 C 0.05 1.21 3.81 -27.88 -0.11 1.10 16 5 C -0.51 -14.17 7.76 -34.44 -0.27 -14.44 16 6 H 0.05 1.46 5.70 -52.49 -0.30 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 9 Si 0.88 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.06 1.13 3.92 -3.82 -0.01 1.12 16 14 N -0.51 -8.62 4.15 -231.62 -0.96 -9.58 16 15 C 0.05 0.72 6.24 -2.55 -0.02 0.71 16 16 C -0.14 -1.73 2.62 -89.73 -0.24 -1.97 16 17 H 0.09 1.13 8.09 -51.93 -0.42 0.71 16 18 C -0.11 -1.04 5.74 -26.84 -0.15 -1.20 16 19 C -0.15 -1.34 5.97 -26.49 -0.16 -1.49 16 20 C 0.05 0.50 6.44 -3.58 -0.02 0.48 16 21 N -0.66 -7.55 7.00 -106.48 -0.75 -8.30 16 22 C 0.06 0.76 2.66 -67.68 -0.18 0.58 16 23 H 0.08 0.99 7.81 -51.93 -0.41 0.58 16 24 C 0.05 0.77 4.72 -3.25 -0.02 0.76 16 25 H 0.02 0.40 7.44 -51.93 -0.39 0.02 16 26 H 0.06 1.16 6.88 -51.93 -0.36 0.80 16 27 H 0.06 1.17 5.58 -51.93 -0.29 0.88 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.31 6.70 -51.93 -0.35 0.97 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.03 0.97 7.45 -51.93 -0.39 0.58 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.02 0.33 7.76 -51.93 -0.40 -0.07 16 35 H 0.06 1.13 7.97 -51.93 -0.41 0.72 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.04 0.55 7.84 -51.93 -0.41 0.14 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.61 8.01 -51.93 -0.42 0.20 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.64 8.07 -51.92 -0.42 0.22 16 44 H 0.34 3.80 8.70 -39.29 -0.34 3.46 16 45 H 0.07 1.12 5.20 -51.93 -0.27 0.85 16 46 H 0.08 1.35 7.64 -51.93 -0.40 0.95 16 LS Contribution 336.27 15.07 5.07 5.07 Total: -1.00 -29.69 336.27 -10.22 -39.91 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.48 Total: 1.03 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -0.81 Total: -18.51 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -0.97 Total: -44.48 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.69 -10.22 -39.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353683428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.945 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds