Wall clock time and date at job start Mon Mar 30 2020 01:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47237 * 2 1 4 4 C 1.52990 * 109.47037 * 120.00379 * 2 1 3 5 5 C 1.50701 * 109.47128 * 299.99668 * 4 2 1 6 6 H 1.07993 * 119.99917 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99769 * 180.27671 * 5 4 2 8 8 N 1.31512 * 120.00534 * 359.72563 * 7 5 4 9 9 Si 1.86800 * 119.99573 * 179.72623 * 7 5 4 10 10 H 1.48504 * 109.47097 * 90.00003 * 9 7 5 11 11 H 1.48501 * 109.46962 * 209.99919 * 9 7 5 12 12 H 1.48496 * 109.47376 * 329.99712 * 9 7 5 13 13 C 1.53000 * 109.46936 * 240.00300 * 2 1 3 14 14 N 1.46902 * 109.47552 * 66.41215 * 13 2 1 15 15 C 1.48872 * 111.00260 * 174.51683 * 14 13 2 16 16 C 1.54275 * 102.32730 * 159.22956 * 15 14 13 17 17 H 1.08995 * 107.34734 * 74.08816 * 16 15 14 18 18 C 1.49408 * 112.69869 * 192.52529 * 16 15 14 19 19 C 1.51673 * 115.34689 * 88.77851 * 18 16 15 20 20 C 1.52828 * 110.22200 * 43.27598 * 19 18 16 21 21 N 1.45718 * 108.44837 * 299.84916 * 20 19 18 22 22 C 1.46658 * 112.30017 * 67.02607 * 21 20 19 23 23 H 1.09004 * 111.35378 * 71.48304 * 22 21 20 24 24 C 1.47948 * 110.99945 * 292.17546 * 14 13 2 25 25 H 1.09000 * 109.47165 * 286.13157 * 1 2 3 26 26 H 1.09004 * 109.47130 * 46.13109 * 1 2 3 27 27 H 1.08999 * 109.46987 * 166.12822 * 1 2 3 28 28 H 1.09004 * 109.47490 * 174.23119 * 3 2 1 29 29 H 1.09002 * 109.47606 * 294.23301 * 3 2 1 30 30 H 1.09003 * 109.47040 * 54.22823 * 3 2 1 31 31 H 1.09003 * 109.47039 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.47693 * 59.99904 * 4 2 1 33 33 H 0.96997 * 120.00254 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47546 * 186.41279 * 13 2 1 35 35 H 1.09000 * 109.47499 * 306.41202 * 13 2 1 36 36 H 1.08996 * 110.83693 * 277.43571 * 15 14 13 37 37 H 1.08997 * 110.83506 * 41.02627 * 15 14 13 38 38 H 1.09007 * 108.30339 * 210.30464 * 18 16 15 39 39 H 1.08999 * 108.30392 * 327.44285 * 18 16 15 40 40 H 1.08997 * 109.34039 * 163.50122 * 19 18 16 41 41 H 1.09002 * 109.34480 * 283.19765 * 19 18 16 42 42 H 1.08996 * 109.71172 * 59.27441 * 20 19 18 43 43 H 1.09002 * 109.70783 * 179.90357 * 20 19 18 44 44 H 1.00897 * 110.21691 * 302.70395 * 21 20 19 45 45 H 1.08999 * 109.91643 * 335.85696 * 24 14 13 46 46 H 1.09001 * 109.91331 * 96.94549 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.5377 -0.0109 2.4796 6 1 0.9165 0.8669 2.3806 7 6 1.8755 -0.4788 3.7319 8 7 2.6316 -1.5480 3.8526 9 14 1.2592 0.4063 5.2571 10 1 -0.0477 -0.1670 5.6679 11 1 2.2416 0.2380 6.3579 12 1 1.0937 1.8514 4.9580 13 6 2.0400 -0.7212 -1.2493 14 7 1.6807 0.0548 -2.4438 15 6 2.2737 -0.5471 -3.6694 16 6 1.3830 0.0351 -4.7864 17 1 1.6612 1.0816 -4.9116 18 6 1.5839 -0.6488 -6.0994 19 6 0.7060 -1.8619 -6.3406 20 6 -0.7268 -1.5746 -5.8932 21 7 -0.7113 -1.2608 -4.4703 22 6 -0.0213 0.0018 -4.1863 23 1 -0.6074 0.8582 -4.5200 24 6 0.2165 0.0544 -2.6557 25 1 -0.3633 0.2855 0.9872 26 1 -0.3633 0.7122 -0.7409 27 1 -0.3633 -0.9977 -0.2464 28 1 3.1252 1.4442 0.1033 29 1 1.7635 1.9257 -0.9371 30 1 1.5948 1.9852 0.8338 31 1 3.1300 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2491 33 1 2.8695 -1.8769 4.7335 34 1 3.1239 -0.8217 -1.1939 35 1 1.5860 -1.7104 -1.3086 36 1 3.3092 -0.2307 -3.7948 37 1 2.2000 -1.6343 -3.6421 38 1 1.3959 0.0734 -6.8940 39 1 2.6251 -0.9644 -6.1653 40 1 0.7105 -2.1053 -7.4031 41 1 1.0958 -2.7080 -5.7747 42 1 -1.1211 -0.7228 -6.4473 43 1 -1.3503 -2.4506 -6.0717 44 1 -0.3015 -2.0218 -3.9498 45 1 -0.2272 -0.8206 -2.1806 46 1 -0.2191 0.9631 -2.2402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353683432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:33 Heat of formation + Delta-G solvation = -2.490122 kcal Electronic energy + Delta-G solvation = -21698.649453 eV Core-core repulsion = 18815.389550 eV Total energy + Delta-G solvation = -2883.259903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.44222 -37.59329 -35.01725 -32.80174 -32.32293 -30.57225 -28.14045 -26.80358 -26.07416 -25.91793 -23.87875 -22.78805 -22.01743 -20.75798 -19.25716 -17.77939 -16.32563 -16.13693 -15.87445 -15.13329 -14.69781 -14.54640 -14.42165 -14.09490 -13.60885 -13.24301 -12.87286 -12.75145 -12.48959 -12.23688 -11.98636 -11.87440 -11.67019 -11.53242 -11.33453 -11.00274 -10.89864 -10.77248 -10.73398 -10.60002 -10.39163 -10.31667 -10.08078 -9.90435 -9.59031 -8.92975 -8.78491 -8.43977 -8.28853 -8.07119 -5.93587 -3.93347 3.35369 3.41865 3.45094 4.03705 4.32023 4.41755 4.52056 4.58488 4.74039 4.87571 4.91655 5.08734 5.27463 5.37938 5.42349 5.48453 5.60697 5.64906 5.70833 5.74522 5.77627 5.81713 5.85359 5.93221 6.03765 6.10286 6.13716 6.20870 6.33482 6.40612 6.60988 6.71047 6.80306 6.91743 6.95184 7.11717 7.25771 7.26461 7.30309 7.35571 7.50125 7.73757 7.89058 8.06862 8.51772 9.12005 9.69253 11.18166 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.041869 B = 0.004034 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.593208 B = 6939.167666 C = 7029.440462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C -0.114 4.114 4 C 0.034 3.966 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.058 3.942 14 N -0.511 5.511 15 C 0.039 3.961 16 C -0.123 4.123 17 H 0.076 0.924 18 C -0.103 4.103 19 C -0.157 4.157 20 C 0.059 3.941 21 N -0.681 5.681 22 C 0.084 3.916 23 H 0.091 0.909 24 C 0.034 3.966 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.014 0.986 32 H 0.011 0.989 33 H 0.258 0.742 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.340 0.660 45 H 0.063 0.937 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 1.032 -20.139 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.055 4.055 3 C -0.172 4.172 4 C -0.003 4.003 5 C -0.543 4.543 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.069 4.069 14 N -0.235 5.235 15 C -0.089 4.089 16 C -0.144 4.144 17 H 0.095 0.905 18 C -0.141 4.141 19 C -0.196 4.196 20 C -0.071 4.071 21 N -0.310 5.310 22 C -0.026 4.026 23 H 0.109 0.891 24 C -0.094 4.094 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.158 0.842 45 H 0.082 0.918 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.074 1.757 -19.900 20.388 hybrid contribution 0.557 -0.811 0.721 1.219 sum -3.517 0.946 -19.179 19.522 Atomic orbital electron populations 1.22278 0.96068 0.99587 1.02133 1.20567 0.94824 0.96089 0.94007 1.21578 0.99872 0.95798 0.99911 1.19119 0.95981 0.94981 0.90234 1.21238 1.30564 1.11951 0.90594 0.92272 1.25012 0.95404 0.95138 0.99033 1.69965 1.37287 1.23343 1.23243 0.86670 0.78496 0.80178 0.83123 1.20821 1.21399 1.19903 1.22468 1.00342 0.94005 0.90107 1.64885 1.07034 1.49661 1.01879 1.23233 0.98927 0.96711 0.89981 1.21390 0.97223 1.01397 0.94422 0.90524 1.20327 1.00116 0.97201 0.96504 1.21914 0.97748 0.98174 1.01775 1.21738 0.94784 1.01366 0.89248 1.60400 1.57951 1.05064 1.07599 1.22302 0.91779 0.92763 0.95805 0.89124 1.23715 0.89724 1.02893 0.93083 0.91618 0.93318 0.94490 0.94216 0.93566 0.93088 0.96783 0.97040 0.93203 0.91388 0.95402 0.90316 0.94437 0.92353 0.92025 0.91536 0.92220 0.91093 0.90737 0.84190 0.91846 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 6.97 37.16 0.26 -2.47 16 2 C -0.05 -1.10 0.59 -154.52 -0.09 -1.19 16 3 C -0.11 -2.25 7.94 37.15 0.29 -1.96 16 4 C 0.03 0.87 4.04 -27.89 -0.11 0.76 16 5 C -0.51 -13.95 7.52 -34.44 -0.26 -14.21 16 6 H 0.06 1.60 5.79 -52.49 -0.30 1.29 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.06 1.02 3.97 -3.82 -0.02 1.01 16 14 N -0.51 -7.52 4.12 -229.90 -0.95 -8.46 16 15 C 0.04 0.49 5.91 -2.06 -0.01 0.48 16 16 C -0.12 -1.31 2.72 -91.85 -0.25 -1.56 16 17 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 18 C -0.10 -0.92 5.40 -29.18 -0.16 -1.08 16 19 C -0.16 -1.29 6.06 -27.49 -0.17 -1.46 16 20 C 0.06 0.52 6.55 -4.55 -0.03 0.49 16 21 N -0.68 -7.34 6.41 -106.89 -0.68 -8.02 16 22 C 0.08 0.95 3.69 -66.92 -0.25 0.70 16 23 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 24 C 0.03 0.46 4.44 -2.20 -0.01 0.45 16 25 H 0.06 1.39 6.29 -51.93 -0.33 1.06 16 26 H 0.05 0.81 4.75 -51.93 -0.25 0.56 16 27 H 0.04 0.68 7.13 -51.93 -0.37 0.31 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.82 7.24 -51.93 -0.38 0.45 16 30 H 0.05 1.06 6.82 -51.93 -0.35 0.71 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 35 H 0.03 0.49 7.79 -51.93 -0.40 0.09 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.47 8.02 -51.93 -0.42 0.06 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.54 7.89 -51.93 -0.41 0.13 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.34 3.82 8.13 -39.29 -0.32 3.50 16 45 H 0.06 0.93 5.33 -51.93 -0.28 0.65 16 46 H 0.09 1.28 6.13 -51.93 -0.32 0.96 16 LS Contribution 333.21 15.07 5.02 5.02 Total: -1.00 -28.80 333.21 -10.12 -38.92 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -8.33 Total: 0.71 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -0.89 Total: -18.58 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -0.90 Total: -42.82 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.80 -10.12 -38.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353683432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.430 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds