Wall clock time and date at job start Mon Mar 30 2020 01:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47237 * 2 1 4 4 C 1.52990 * 109.47037 * 120.00379 * 2 1 3 5 5 C 1.50701 * 109.47128 * 299.99668 * 4 2 1 6 6 H 1.07993 * 119.99917 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99769 * 180.27671 * 5 4 2 8 8 N 1.31512 * 120.00534 * 359.72563 * 7 5 4 9 9 Si 1.86800 * 119.99573 * 179.72623 * 7 5 4 10 10 H 1.48504 * 109.47097 * 90.00003 * 9 7 5 11 11 H 1.48501 * 109.46962 * 209.99919 * 9 7 5 12 12 H 1.48496 * 109.47376 * 329.99712 * 9 7 5 13 13 C 1.53000 * 109.46936 * 240.00300 * 2 1 3 14 14 N 1.46902 * 109.47552 * 66.41215 * 13 2 1 15 15 C 1.48872 * 111.00260 * 174.51683 * 14 13 2 16 16 C 1.54275 * 102.32730 * 159.22956 * 15 14 13 17 17 H 1.08995 * 107.34734 * 74.08816 * 16 15 14 18 18 C 1.49408 * 112.69869 * 192.52529 * 16 15 14 19 19 C 1.51673 * 115.34689 * 88.77851 * 18 16 15 20 20 C 1.52828 * 110.22200 * 43.27598 * 19 18 16 21 21 N 1.45718 * 108.44837 * 299.84916 * 20 19 18 22 22 C 1.46658 * 112.30017 * 67.02607 * 21 20 19 23 23 H 1.09004 * 111.35378 * 71.48304 * 22 21 20 24 24 C 1.47948 * 110.99945 * 292.17546 * 14 13 2 25 25 H 1.09000 * 109.47165 * 286.13157 * 1 2 3 26 26 H 1.09004 * 109.47130 * 46.13109 * 1 2 3 27 27 H 1.08999 * 109.46987 * 166.12822 * 1 2 3 28 28 H 1.09004 * 109.47490 * 174.23119 * 3 2 1 29 29 H 1.09002 * 109.47606 * 294.23301 * 3 2 1 30 30 H 1.09003 * 109.47040 * 54.22823 * 3 2 1 31 31 H 1.09003 * 109.47039 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.47693 * 59.99904 * 4 2 1 33 33 H 0.96997 * 120.00254 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47546 * 186.41279 * 13 2 1 35 35 H 1.09000 * 109.47499 * 306.41202 * 13 2 1 36 36 H 1.08996 * 110.83693 * 277.43571 * 15 14 13 37 37 H 1.08997 * 110.83506 * 41.02627 * 15 14 13 38 38 H 1.09007 * 108.30339 * 210.30464 * 18 16 15 39 39 H 1.08999 * 108.30392 * 327.44285 * 18 16 15 40 40 H 1.08997 * 109.34039 * 163.50122 * 19 18 16 41 41 H 1.09002 * 109.34480 * 283.19765 * 19 18 16 42 42 H 1.08996 * 109.71172 * 59.27441 * 20 19 18 43 43 H 1.09002 * 109.70783 * 179.90357 * 20 19 18 44 44 H 1.00897 * 110.21691 * 302.70395 * 21 20 19 45 45 H 1.08999 * 109.91643 * 335.85696 * 24 14 13 46 46 H 1.09001 * 109.91331 * 96.94549 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.5377 -0.0109 2.4796 6 1 0.9165 0.8669 2.3806 7 6 1.8755 -0.4788 3.7319 8 7 2.6316 -1.5480 3.8526 9 14 1.2592 0.4063 5.2571 10 1 -0.0477 -0.1670 5.6679 11 1 2.2416 0.2380 6.3579 12 1 1.0937 1.8514 4.9580 13 6 2.0400 -0.7212 -1.2493 14 7 1.6807 0.0548 -2.4438 15 6 2.2737 -0.5471 -3.6694 16 6 1.3830 0.0351 -4.7864 17 1 1.6612 1.0816 -4.9116 18 6 1.5839 -0.6488 -6.0994 19 6 0.7060 -1.8619 -6.3406 20 6 -0.7268 -1.5746 -5.8932 21 7 -0.7113 -1.2608 -4.4703 22 6 -0.0213 0.0018 -4.1863 23 1 -0.6074 0.8582 -4.5200 24 6 0.2165 0.0544 -2.6557 25 1 -0.3633 0.2855 0.9872 26 1 -0.3633 0.7122 -0.7409 27 1 -0.3633 -0.9977 -0.2464 28 1 3.1252 1.4442 0.1033 29 1 1.7635 1.9257 -0.9371 30 1 1.5948 1.9852 0.8338 31 1 3.1300 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2491 33 1 2.8695 -1.8769 4.7335 34 1 3.1239 -0.8217 -1.1939 35 1 1.5860 -1.7104 -1.3086 36 1 3.3092 -0.2307 -3.7948 37 1 2.2000 -1.6343 -3.6421 38 1 1.3959 0.0734 -6.8940 39 1 2.6251 -0.9644 -6.1653 40 1 0.7105 -2.1053 -7.4031 41 1 1.0958 -2.7080 -5.7747 42 1 -1.1211 -0.7228 -6.4473 43 1 -1.3503 -2.4506 -6.0717 44 1 -0.3015 -2.0218 -3.9498 45 1 -0.2272 -0.8206 -2.1806 46 1 -0.2191 0.9631 -2.2402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353683432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:32 Heat of formation + Delta-G solvation = -20.541607 kcal Electronic energy + Delta-G solvation = -21699.432224 eV Core-core repulsion = 18815.389550 eV Total energy + Delta-G solvation = -2884.042674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.43984 -38.94824 -36.32884 -34.40256 -33.54872 -31.71858 -29.47701 -28.60998 -27.54289 -27.21137 -25.22790 -24.10759 -23.05382 -21.90349 -20.17244 -19.36805 -18.30084 -17.27331 -16.97926 -16.42226 -15.98959 -15.62953 -15.57663 -15.20363 -14.97263 -14.55087 -14.42127 -14.08900 -13.95628 -13.58256 -13.29985 -13.12338 -12.84017 -12.77561 -12.64684 -12.45578 -12.36202 -12.22784 -12.19145 -12.00388 -11.91540 -11.67218 -11.37719 -11.29308 -11.15548 -10.81317 -10.62159 -10.50434 -9.32319 -9.20543 -8.14087 -6.21011 1.40780 1.41369 1.52196 2.43759 3.00020 3.19789 3.39816 3.52616 3.72312 3.87565 4.10535 4.12977 4.19158 4.21630 4.26583 4.39710 4.46213 4.51330 4.66976 4.69780 4.76683 4.79374 4.88536 4.92946 5.00085 5.02868 5.05143 5.08340 5.14144 5.18928 5.22961 5.27513 5.31982 5.40868 5.52751 5.53824 5.60223 5.65883 5.84890 5.91846 5.96664 6.10720 6.25320 6.36882 6.40352 6.93676 7.46192 8.98381 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.041869 B = 0.004034 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.593208 B = 6939.167666 C = 7029.440462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.051 4.051 3 C -0.104 4.104 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.263 1.263 13 C 0.071 3.929 14 N -0.514 5.514 15 C 0.039 3.961 16 C -0.113 4.113 17 H 0.076 0.924 18 C -0.102 4.102 19 C -0.152 4.152 20 C 0.059 3.941 21 N -0.689 5.689 22 C 0.092 3.908 23 H 0.099 0.901 24 C 0.033 3.967 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.036 0.964 31 H -0.017 1.017 32 H -0.018 1.018 33 H 0.260 0.740 34 H 0.057 0.943 35 H 0.022 0.978 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.335 0.665 45 H 0.052 0.948 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.794 2.161 -21.865 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.051 4.051 3 C -0.161 4.161 4 C 0.004 3.996 5 C -0.552 4.552 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.187 1.187 13 C -0.057 4.057 14 N -0.238 5.238 15 C -0.089 4.089 16 C -0.134 4.134 17 H 0.095 0.905 18 C -0.140 4.140 19 C -0.191 4.191 20 C -0.071 4.071 21 N -0.318 5.318 22 C -0.019 4.019 23 H 0.117 0.883 24 C -0.095 4.095 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.002 0.998 32 H 0.000 1.000 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.153 0.847 45 H 0.070 0.930 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.151 2.897 -21.650 22.442 hybrid contribution 0.902 -1.195 1.210 1.924 sum -4.249 1.702 -20.440 20.946 Atomic orbital electron populations 1.22192 0.94804 1.00470 1.01610 1.20428 0.95764 0.96079 0.92871 1.21474 0.98931 0.95205 1.00508 1.18994 0.93930 0.93930 0.92751 1.21603 1.30126 1.11988 0.91453 0.91683 1.25914 0.95649 0.95919 1.02552 1.70107 1.38783 1.25043 1.24036 0.85577 0.77983 0.79384 0.78919 1.20042 1.21186 1.18710 1.22159 0.99439 0.93681 0.90434 1.64816 1.08134 1.49139 1.01667 1.23292 0.99408 0.96645 0.89522 1.21337 0.96106 1.01417 0.94520 0.90545 1.20318 1.00453 0.97647 0.95619 1.21873 0.97050 0.97546 1.02670 1.21803 0.95366 1.01944 0.87964 1.60411 1.57808 1.04683 1.08893 1.22214 0.92346 0.93406 0.93909 0.88350 1.23674 0.88640 1.02105 0.95038 0.93927 0.90467 0.94404 0.95345 0.91181 0.94457 0.99838 0.99989 0.93156 0.92468 0.96004 0.90091 0.94631 0.91137 0.91778 0.89907 0.92977 0.90580 0.89921 0.84676 0.92965 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 6.97 71.98 0.50 -4.54 16 2 C -0.05 -2.08 0.59 -52.19 -0.03 -2.12 16 3 C -0.10 -4.06 7.94 71.98 0.57 -3.49 16 4 C 0.04 2.20 4.04 29.84 0.12 2.32 16 5 C -0.51 -28.94 7.52 25.60 0.19 -28.75 16 6 H 0.07 3.53 5.79 -2.91 -0.02 3.51 16 7 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 8 N -0.94 -58.06 13.29 21.45 0.28 -57.77 16 9 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 13 C 0.07 2.52 3.97 86.30 0.34 2.86 16 14 N -0.51 -14.54 4.12 -881.27 -3.63 -18.18 16 15 C 0.04 0.91 5.91 86.35 0.51 1.42 16 16 C -0.11 -2.13 2.72 -11.59 -0.03 -2.16 16 17 H 0.08 1.48 8.13 -2.39 -0.02 1.46 16 18 C -0.10 -1.53 5.40 29.01 0.16 -1.37 16 19 C -0.15 -2.10 6.06 30.10 0.18 -1.91 16 20 C 0.06 0.88 6.55 86.47 0.57 1.45 16 21 N -0.69 -13.48 6.41 -492.08 -3.15 -16.63 16 22 C 0.09 1.87 3.69 45.56 0.17 2.03 16 23 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 24 C 0.03 0.84 4.44 86.78 0.38 1.23 16 25 H 0.04 1.78 6.29 -2.39 -0.02 1.77 16 26 H 0.08 2.46 4.75 -2.39 -0.01 2.45 16 27 H 0.04 1.39 7.13 -2.39 -0.02 1.37 16 28 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.07 2.39 7.24 -2.39 -0.02 2.37 16 30 H 0.04 1.53 6.82 -2.39 -0.02 1.52 16 31 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 32 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 33 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.06 2.12 8.13 -2.39 -0.02 2.10 16 35 H 0.02 0.79 7.79 -2.39 -0.02 0.77 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.04 0.86 8.02 -2.39 -0.02 0.84 16 38 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.06 0.95 7.89 -2.39 -0.02 0.94 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.34 7.07 8.13 -89.70 -0.73 6.35 16 45 H 0.05 1.47 5.33 -2.39 -0.01 1.46 16 46 H 0.09 2.27 6.13 -2.39 -0.01 2.25 16 Total: -1.00 -62.61 333.21 -0.17 -62.77 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.21 Total: 15.57 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 4.10 Total: -32.79 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -6.50 Total: -92.58 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -62.61 -0.17 -62.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353683432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.233 kcal (2) G-P(sol) polarization free energy of solvation -62.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds