Wall clock time and date at job start Mon Mar 30 2020 01:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47252 * 2 1 4 4 C 1.52995 * 109.47365 * 120.00089 * 2 1 3 5 5 C 1.50705 * 109.47210 * 300.00172 * 4 2 1 6 6 H 1.08009 * 119.99588 * 359.97438 * 5 4 2 7 7 C 1.37867 * 120.00434 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99717 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00416 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47408 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.46960 * 299.99908 * 9 7 5 12 12 H 1.48496 * 109.47317 * 60.00008 * 9 7 5 13 13 C 1.53000 * 109.47157 * 239.99921 * 2 1 3 14 14 N 1.46895 * 109.47197 * 292.22396 * 13 2 1 15 15 C 1.48498 * 111.00041 * 195.05150 * 14 13 2 16 16 C 1.55334 * 105.15226 * 203.76359 * 15 14 13 17 17 H 1.09003 * 109.62083 * 260.52216 * 16 15 14 18 18 C 1.51754 * 107.27998 * 141.53469 * 16 15 14 19 19 C 1.52395 * 112.35499 * 211.81697 * 18 16 15 20 20 C 1.53492 * 107.86061 * 56.38947 * 19 18 16 21 21 N 1.46836 * 107.35029 * 291.71851 * 20 19 18 22 22 C 1.43074 * 115.22450 * 56.24811 * 21 20 19 23 23 H 1.09010 * 105.09159 * 209.24344 * 22 21 20 24 24 C 1.48968 * 110.99893 * 79.45802 * 14 13 2 25 25 H 1.08993 * 109.46812 * 327.06249 * 1 2 3 26 26 H 1.09003 * 109.47068 * 87.06158 * 1 2 3 27 27 H 1.08994 * 109.47080 * 207.05845 * 1 2 3 28 28 H 1.09004 * 109.47357 * 184.74605 * 3 2 1 29 29 H 1.09005 * 109.47079 * 304.74815 * 3 2 1 30 30 H 1.09001 * 109.47229 * 64.74442 * 3 2 1 31 31 H 1.08997 * 109.47798 * 180.02562 * 4 2 1 32 32 H 1.08999 * 109.47229 * 59.99444 * 4 2 1 33 33 H 0.97002 * 119.99530 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.47022 * 52.22232 * 13 2 1 35 35 H 1.08998 * 109.47156 * 172.21828 * 13 2 1 36 36 H 1.09008 * 110.30935 * 322.68241 * 15 14 13 37 37 H 1.08999 * 110.30791 * 84.84270 * 15 14 13 38 38 H 1.09000 * 108.90751 * 332.55954 * 18 16 15 39 39 H 1.08999 * 108.90543 * 91.17467 * 18 16 15 40 40 H 1.09001 * 109.78104 * 175.97861 * 19 18 16 41 41 H 1.08993 * 109.78641 * 296.74473 * 19 18 16 42 42 H 1.09007 * 109.83585 * 51.51306 * 20 19 18 43 43 H 1.08995 * 109.83871 * 172.40576 * 20 19 18 44 44 H 1.00902 * 111.73896 * 288.33956 * 21 20 19 45 45 H 1.08994 * 110.66392 * 278.34378 * 24 14 13 46 46 H 1.08994 * 110.66970 * 41.47651 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5377 -0.0109 2.4797 6 1 0.9171 0.8675 2.3806 7 6 1.8703 -0.4822 3.7319 8 7 2.6257 -1.5521 3.8525 9 14 1.2471 0.3979 5.2572 10 1 1.7422 -0.3020 6.4697 11 1 1.7420 1.7981 5.2577 12 1 -0.2379 0.3978 5.2567 13 6 2.0400 -0.7213 -1.2492 14 7 1.7094 -2.1497 -1.1592 15 6 2.4837 -2.9387 -2.1507 16 6 1.6486 -4.2272 -2.3856 17 1 2.0647 -5.0453 -1.7974 18 6 1.7422 -4.5620 -3.8628 19 6 0.4782 -5.2337 -4.3860 20 6 -0.7067 -4.3049 -4.0871 21 7 -0.8886 -4.2822 -2.6303 22 6 0.2631 -3.8888 -1.8780 23 1 0.1679 -4.4050 -0.9226 24 6 0.2857 -2.3922 -1.5246 25 1 -0.3633 0.8624 0.5587 26 1 -0.3633 0.0527 -1.0263 27 1 -0.3633 -0.9151 0.4675 28 1 3.1268 1.4437 -0.0850 29 1 1.6089 1.9803 -0.8444 30 1 1.7478 1.9312 0.9294 31 1 3.1300 -0.7209 1.2495 32 1 1.6767 -1.7489 1.2492 33 1 2.8600 -1.8834 4.7336 34 1 1.5676 -0.2940 -2.1338 35 1 3.1211 -0.6023 -1.3215 36 1 2.5871 -2.3801 -3.0811 37 1 3.4651 -3.1918 -1.7495 38 1 1.9115 -3.6426 -4.4233 39 1 2.5875 -5.2319 -4.0202 40 1 0.5620 -5.3905 -5.4615 41 1 0.3339 -6.1903 -3.8840 42 1 -0.4921 -3.3015 -4.4550 43 1 -1.6076 -4.6891 -4.5654 44 1 -1.2646 -5.1534 -2.2870 45 1 -0.3690 -2.1869 -0.6777 46 1 0.0017 -1.7890 -2.3869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353683438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:34 Heat of formation + Delta-G solvation = -24.339796 kcal Electronic energy + Delta-G solvation = -21829.991191 eV Core-core repulsion = 18945.783815 eV Total energy + Delta-G solvation = -2884.207376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23688 -38.85153 -36.37579 -34.38463 -33.60885 -31.71537 -29.13090 -28.95486 -27.53486 -27.04581 -25.00940 -24.02940 -23.08413 -22.09800 -19.93874 -19.43062 -18.26696 -17.69609 -16.86840 -16.38949 -16.23284 -15.51040 -15.33604 -15.01607 -14.74506 -14.51664 -14.23520 -14.13391 -13.85642 -13.82826 -13.31852 -13.08819 -13.00865 -12.77300 -12.68020 -12.46323 -12.39482 -12.16966 -12.13205 -12.03220 -11.69597 -11.68980 -11.40388 -11.26833 -11.07583 -10.72060 -10.68316 -10.40821 -9.18518 -9.16338 -8.05364 -6.12048 1.41441 1.43855 1.50880 2.48009 2.96635 3.27530 3.40756 3.51360 3.81844 3.90293 4.05443 4.13042 4.16982 4.24140 4.34339 4.43673 4.47946 4.54868 4.64448 4.70803 4.74029 4.79494 4.85280 4.88647 4.93728 4.96211 5.06940 5.08060 5.11247 5.16143 5.21272 5.22555 5.29304 5.37345 5.54140 5.57470 5.66012 5.75739 5.99958 6.01657 6.12797 6.28047 6.40266 6.46815 6.58031 7.06371 7.54118 9.06126 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.027537 B = 0.004773 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.576407 B = 5865.534979 C = 6071.534592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.058 4.058 3 C -0.124 4.124 4 C 0.063 3.937 5 C -0.517 4.517 6 H 0.059 0.941 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.950 3.050 10 H -0.288 1.288 11 H -0.269 1.269 12 H -0.270 1.270 13 C 0.069 3.931 14 N -0.524 5.524 15 C 0.038 3.962 16 C -0.104 4.104 17 H 0.070 0.930 18 C -0.107 4.107 19 C -0.150 4.150 20 C 0.068 3.932 21 N -0.697 5.697 22 C 0.110 3.890 23 H 0.042 0.958 24 C 0.051 3.949 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.048 0.952 31 H -0.031 1.031 32 H 0.003 0.997 33 H 0.257 0.743 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.093 0.907 44 H 0.358 0.642 45 H 0.072 0.928 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.990 -5.376 -18.604 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.058 4.058 3 C -0.181 4.181 4 C 0.026 3.974 5 C -0.555 4.555 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.776 3.224 10 H -0.214 1.214 11 H -0.194 1.194 12 H -0.195 1.195 13 C -0.059 4.059 14 N -0.248 5.248 15 C -0.090 4.090 16 C -0.125 4.125 17 H 0.088 0.912 18 C -0.145 4.145 19 C -0.189 4.189 20 C -0.060 4.060 21 N -0.327 5.327 22 C -0.002 4.002 23 H 0.061 0.939 24 C -0.078 4.078 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.067 0.933 31 H -0.012 1.012 32 H 0.021 0.979 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.179 0.821 45 H 0.090 0.910 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.009 -5.028 -17.935 19.289 hybrid contribution 0.575 -0.193 0.615 0.864 sum -4.434 -5.222 -17.320 18.626 Atomic orbital electron populations 1.21781 0.94901 1.00566 0.99602 1.20525 0.95602 0.94915 0.94804 1.21716 0.99795 0.95527 1.01088 1.18772 0.92800 0.94854 0.91009 1.21724 1.30025 1.11672 0.92090 0.92248 1.25859 0.95877 0.95900 1.02281 1.70137 1.39035 1.24900 1.23668 0.85728 0.78890 0.78823 0.78949 1.21419 1.19432 1.19475 1.22270 0.99579 0.87645 0.96442 1.65315 1.04483 1.08275 1.46711 1.23513 0.97650 0.93891 0.93972 1.21598 0.95781 0.97274 0.97856 0.91172 1.21230 0.99034 1.01097 0.93137 1.22140 0.95747 0.98837 1.02161 1.22081 0.98059 0.99296 0.86550 1.57509 1.30970 1.39141 1.05110 1.20206 0.88531 0.95577 0.95884 0.93906 1.23244 0.89917 0.95836 0.98780 0.93960 0.92782 0.94191 0.94097 0.92007 0.93332 1.01228 0.97854 0.93454 0.93859 0.92304 0.93043 0.91558 0.92024 0.91338 0.89683 0.91747 0.91817 0.88821 0.82131 0.90951 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.30 6.65 71.98 0.48 -3.82 16 2 C -0.06 -2.40 0.61 -52.18 -0.03 -2.43 16 3 C -0.12 -4.68 8.14 71.98 0.59 -4.09 16 4 C 0.06 3.38 3.65 29.85 0.11 3.49 16 5 C -0.52 -29.56 7.74 25.60 0.20 -29.36 16 6 H 0.06 3.26 6.08 -2.91 -0.02 3.24 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 8 N -0.94 -59.04 13.29 21.44 0.28 -58.75 16 9 Si 0.95 45.73 29.54 68.60 2.03 47.76 16 10 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 13 C 0.07 2.46 3.97 86.30 0.34 2.80 16 14 N -0.52 -18.68 4.21 -879.73 -3.70 -22.38 16 15 C 0.04 1.10 5.96 86.80 0.52 1.62 16 16 C -0.10 -2.59 3.31 -10.93 -0.04 -2.63 16 17 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 18 C -0.11 -1.99 5.36 29.98 0.16 -1.83 16 19 C -0.15 -2.23 6.13 30.56 0.19 -2.05 16 20 C 0.07 1.14 6.78 86.48 0.59 1.73 16 21 N -0.70 -14.93 6.33 -500.32 -3.16 -18.09 16 22 C 0.11 2.98 3.00 45.37 0.14 3.11 16 23 H 0.04 1.32 8.05 -2.38 -0.02 1.30 16 24 C 0.05 1.62 4.73 86.17 0.41 2.03 16 25 H 0.04 1.63 7.42 -2.39 -0.02 1.61 16 26 H 0.05 1.76 7.04 -2.39 -0.02 1.75 16 27 H 0.04 1.69 6.09 -2.39 -0.01 1.68 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.05 2.00 6.48 -2.39 -0.02 1.99 16 31 H -0.03 -1.85 8.14 -2.39 -0.02 -1.87 16 32 H 0.00 0.18 7.38 -2.39 -0.02 0.17 16 33 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.04 1.35 7.48 -2.38 -0.02 1.34 16 35 H 0.06 2.12 8.00 -2.39 -0.02 2.10 16 36 H 0.05 1.34 6.93 -2.38 -0.02 1.32 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.06 1.15 7.08 -2.39 -0.02 1.14 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 1.18 8.11 -2.38 -0.02 1.17 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.36 6.58 8.88 -89.69 -0.80 5.78 16 45 H 0.07 2.64 5.51 -2.39 -0.01 2.63 16 46 H 0.04 1.27 7.64 -2.39 -0.02 1.25 16 Total: -1.00 -66.18 335.92 -0.31 -66.49 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.14 Total: 16.11 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 4.10 Total: -31.13 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -6.58 Total: -99.23 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -66.18 -0.31 -66.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353683438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.150 kcal (2) G-P(sol) polarization free energy of solvation -66.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds