Wall clock time and date at job start Mon Mar 30 2020 01:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46851 * 2 1 4 4 C 1.52996 * 109.47219 * 239.99956 * 2 1 3 5 5 C 1.50699 * 109.47239 * 59.99650 * 4 2 1 6 6 H 1.08003 * 119.99960 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99798 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00253 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99629 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47142 * 60.00574 * 9 7 5 11 11 H 1.48506 * 109.47042 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47444 * 300.00415 * 9 7 5 13 13 C 1.52993 * 109.46733 * 119.99706 * 2 1 3 14 14 N 1.46906 * 109.47378 * 299.99953 * 13 2 1 15 15 C 1.46898 * 110.99888 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47138 * 180.02562 * 15 14 13 17 17 N 1.46898 * 109.47138 * 179.97438 * 16 15 14 18 18 C 1.46843 * 110.99961 * 292.92674 * 17 16 15 19 19 C 1.50137 * 110.27605 * 287.55642 * 18 17 16 20 20 C 1.29828 * 123.28129 * 342.91624 * 19 18 17 21 21 C 1.50302 * 122.89169 * 0.40739 * 20 19 18 22 22 C 1.47243 * 110.99579 * 170.00072 * 17 16 15 23 23 H 1.09002 * 109.47288 * 300.00339 * 1 2 3 24 24 H 1.09001 * 109.46630 * 60.00102 * 1 2 3 25 25 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46524 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46962 * 299.99689 * 3 2 1 28 28 H 1.08992 * 109.47457 * 59.99755 * 3 2 1 29 29 H 1.08996 * 109.47261 * 180.02562 * 4 2 1 30 30 H 1.09000 * 109.46870 * 299.99985 * 4 2 1 31 31 H 0.97001 * 120.00663 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46862 * 180.02562 * 13 2 1 33 33 H 1.09000 * 109.47250 * 60.00079 * 13 2 1 34 34 H 1.00901 * 111.00013 * 303.95621 * 14 13 2 35 35 H 1.08997 * 109.47334 * 299.99788 * 15 14 13 36 36 H 1.08995 * 109.47296 * 60.00089 * 15 14 13 37 37 H 1.08997 * 109.46770 * 300.00054 * 16 15 14 38 38 H 1.09004 * 109.46866 * 60.00123 * 16 15 14 39 39 H 1.09003 * 109.33681 * 47.79121 * 18 17 16 40 40 H 1.09003 * 109.33243 * 167.29124 * 18 17 16 41 41 H 1.07997 * 118.36113 * 162.90866 * 19 18 17 42 42 H 1.08003 * 118.55041 * 180.39813 * 20 19 18 43 43 H 1.09000 * 109.43067 * 223.40847 * 21 20 19 44 44 H 1.09001 * 109.42444 * 103.56248 * 21 20 19 45 45 H 1.09005 * 109.63475 * 174.27728 * 22 17 16 46 46 H 1.09001 * 109.63607 * 294.67897 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8713 -0.4818 -3.7320 8 7 2.6274 -1.5509 -3.8526 9 14 1.2492 0.3992 -5.2572 10 1 1.7442 1.7992 -5.2567 11 1 1.7441 -0.3010 -6.4697 12 1 -0.2358 0.3993 -5.2577 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0286 2.4487 15 6 2.0217 -0.6944 3.6703 16 6 1.4921 0.0535 4.8956 17 7 1.9631 -0.6126 6.1172 18 6 1.3577 -1.9431 6.2579 19 6 -0.0911 -1.8186 6.6316 20 6 -0.6131 -0.7292 7.1072 21 6 0.1805 0.5285 7.3255 22 6 1.6766 0.2049 7.3079 23 1 -0.3634 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1301 -0.7216 -1.2490 30 1 1.6767 -1.7489 -1.2492 31 1 2.8618 -1.8824 -4.7335 32 1 3.1300 -0.7208 1.2495 33 1 1.6766 -1.7488 1.2493 34 1 1.8197 0.9437 2.4402 35 1 1.6586 -1.7219 3.6874 36 1 3.1116 -0.6938 3.6869 37 1 1.8549 1.0812 4.8787 38 1 0.4022 0.0525 4.8788 39 1 1.4417 -2.4796 5.3128 40 1 1.8844 -2.4989 7.0337 41 1 -0.7310 -2.6782 6.4981 42 1 -1.6639 -0.7265 7.3567 43 1 -0.0854 0.9622 8.2895 44 1 -0.0456 1.2419 6.5330 45 1 1.9416 -0.3518 8.2068 46 1 2.2539 1.1285 7.2655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355488621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:43 Heat of formation + Delta-G solvation = 5.178713 kcal Electronic energy + Delta-G solvation = -20619.394313 eV Core-core repulsion = 17736.466956 eV Total energy + Delta-G solvation = -2882.927357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.84384 -37.59971 -34.76161 -32.84672 -32.00378 -31.15471 -28.68778 -26.85326 -26.29738 -25.23081 -24.19328 -23.12582 -22.05721 -21.47122 -18.08061 -17.50778 -16.75760 -16.21559 -15.75912 -15.62374 -14.91982 -14.55752 -14.30134 -13.85725 -13.69048 -13.54470 -12.97270 -12.79879 -12.46655 -12.43879 -12.34190 -11.99456 -11.91292 -11.70246 -11.35508 -11.04170 -10.90499 -10.85922 -10.77415 -10.68092 -10.44745 -10.22109 -10.10305 -9.64645 -9.26310 -8.98650 -8.80955 -8.47517 -8.29043 -8.03689 -5.93661 -3.93804 1.98706 3.36362 3.40884 3.43131 3.66462 4.48399 4.53050 4.68862 4.73161 4.78035 4.95131 5.00259 5.23761 5.31740 5.33966 5.41969 5.49578 5.56283 5.61486 5.66747 5.72146 5.74702 5.80023 5.95927 6.03200 6.06109 6.28588 6.30495 6.37208 6.54834 6.59274 6.69371 6.81875 6.83976 6.85904 6.90380 7.24182 7.26790 7.29223 7.44838 7.71048 7.74872 7.89138 8.06749 8.51258 9.11429 9.68768 11.18038 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.043249 B = 0.003123 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.255811 B = 8963.986841 C = 9031.008921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.059 4.059 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.072 3.928 14 N -0.687 5.687 15 C 0.062 3.938 16 C 0.053 3.947 17 N -0.529 5.529 18 C 0.074 3.926 19 C -0.185 4.185 20 C -0.157 4.157 21 C -0.130 4.130 22 C 0.053 3.947 23 H 0.041 0.959 24 H 0.054 0.946 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.033 0.967 29 H 0.012 0.988 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.023 0.977 33 H 0.065 0.935 34 H 0.337 0.663 35 H 0.068 0.932 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 2.536 22.371 22.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.003 4.003 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.056 4.056 14 N -0.319 5.319 15 C -0.068 4.068 16 C -0.076 4.076 17 N -0.251 5.251 18 C -0.054 4.054 19 C -0.204 4.204 20 C -0.175 4.175 21 C -0.168 4.168 22 C -0.076 4.076 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.156 0.844 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.066 2.032 22.189 22.492 hybrid contribution -0.381 0.644 -0.868 1.146 sum -3.447 2.677 21.321 21.763 Atomic orbital electron populations 1.21595 0.95057 1.00520 1.00097 1.20635 0.95822 0.95025 0.94447 1.21765 0.99705 0.96752 1.00367 1.19114 0.95887 0.95178 0.90158 1.21210 1.30779 1.11931 0.90642 0.92350 1.25015 0.95410 0.95129 0.99033 1.69954 1.37261 1.23202 1.23381 0.86727 0.79192 0.79776 0.82705 1.20357 1.21452 1.20323 1.22086 0.96354 0.98019 0.89190 1.60522 1.63773 1.06376 1.01270 1.21884 0.97462 0.98394 0.89087 1.22100 0.99045 0.97681 0.88726 1.62666 1.57055 1.03027 1.02373 1.21193 0.89964 0.91751 1.02512 1.22885 0.98603 0.98763 1.00167 1.22115 0.99735 0.94951 1.00722 1.21101 0.96601 0.96567 1.02555 1.22252 0.93663 0.98201 0.93440 0.93946 0.92735 0.94241 0.94095 0.91755 0.94822 0.96917 0.96717 0.93116 0.95830 0.91684 0.84449 0.91377 0.94916 0.91205 0.93093 0.89289 0.89667 0.87508 0.87858 0.90685 0.90439 0.90603 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.06 37.16 0.30 -1.98 16 2 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 3 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 4 C 0.03 0.87 4.04 -27.89 -0.11 0.76 16 5 C -0.51 -14.01 7.65 -34.44 -0.26 -14.27 16 6 H 0.06 1.56 5.68 -52.48 -0.30 1.27 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.07 1.28 4.65 -3.82 -0.02 1.26 16 14 N -0.69 -10.18 5.71 -113.78 -0.65 -10.83 16 15 C 0.06 0.79 5.66 -3.82 -0.02 0.77 16 16 C 0.05 0.59 4.29 -3.82 -0.02 0.57 16 17 N -0.53 -5.40 5.02 -236.11 -1.19 -6.59 16 18 C 0.07 0.70 5.83 -5.28 -0.03 0.67 16 19 C -0.18 -1.73 9.37 -35.97 -0.34 -2.07 16 20 C -0.16 -1.42 9.29 -35.89 -0.33 -1.76 16 21 C -0.13 -1.06 5.54 -28.03 -0.16 -1.21 16 22 C 0.05 0.45 6.02 -3.59 -0.02 0.42 16 23 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 24 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 28 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.34 4.77 6.77 -39.29 -0.27 4.50 16 35 H 0.07 0.90 6.36 -51.93 -0.33 0.57 16 36 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 38 H 0.05 0.62 6.04 -51.93 -0.31 0.31 16 39 H 0.09 0.89 6.06 -51.93 -0.31 0.58 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.10 0.85 8.06 -52.48 -0.42 0.43 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.68 7.16 -51.93 -0.37 0.30 16 45 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -29.29 346.71 -10.17 -39.46 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.37 Total: 1.14 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -0.91 Total: -18.77 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -1.10 Total: -43.77 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.29 -10.17 -39.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355488621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.635 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds