Wall clock time and date at job start Mon Mar 30 2020 01:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46851 * 2 1 4 4 C 1.52996 * 109.47219 * 239.99956 * 2 1 3 5 5 C 1.50699 * 109.47239 * 59.99650 * 4 2 1 6 6 H 1.08003 * 119.99960 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99798 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00253 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99629 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47142 * 60.00574 * 9 7 5 11 11 H 1.48506 * 109.47042 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47444 * 300.00415 * 9 7 5 13 13 C 1.52993 * 109.46733 * 119.99706 * 2 1 3 14 14 N 1.46906 * 109.47378 * 299.99953 * 13 2 1 15 15 C 1.46898 * 110.99888 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47138 * 180.02562 * 15 14 13 17 17 N 1.46898 * 109.47138 * 179.97438 * 16 15 14 18 18 C 1.46843 * 110.99961 * 292.92674 * 17 16 15 19 19 C 1.50137 * 110.27605 * 287.55642 * 18 17 16 20 20 C 1.29828 * 123.28129 * 342.91624 * 19 18 17 21 21 C 1.50302 * 122.89169 * 0.40739 * 20 19 18 22 22 C 1.47243 * 110.99579 * 170.00072 * 17 16 15 23 23 H 1.09002 * 109.47288 * 300.00339 * 1 2 3 24 24 H 1.09001 * 109.46630 * 60.00102 * 1 2 3 25 25 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46524 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46962 * 299.99689 * 3 2 1 28 28 H 1.08992 * 109.47457 * 59.99755 * 3 2 1 29 29 H 1.08996 * 109.47261 * 180.02562 * 4 2 1 30 30 H 1.09000 * 109.46870 * 299.99985 * 4 2 1 31 31 H 0.97001 * 120.00663 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46862 * 180.02562 * 13 2 1 33 33 H 1.09000 * 109.47250 * 60.00079 * 13 2 1 34 34 H 1.00901 * 111.00013 * 303.95621 * 14 13 2 35 35 H 1.08997 * 109.47334 * 299.99788 * 15 14 13 36 36 H 1.08995 * 109.47296 * 60.00089 * 15 14 13 37 37 H 1.08997 * 109.46770 * 300.00054 * 16 15 14 38 38 H 1.09004 * 109.46866 * 60.00123 * 16 15 14 39 39 H 1.09003 * 109.33681 * 47.79121 * 18 17 16 40 40 H 1.09003 * 109.33243 * 167.29124 * 18 17 16 41 41 H 1.07997 * 118.36113 * 162.90866 * 19 18 17 42 42 H 1.08003 * 118.55041 * 180.39813 * 20 19 18 43 43 H 1.09000 * 109.43067 * 223.40847 * 21 20 19 44 44 H 1.09001 * 109.42444 * 103.56248 * 21 20 19 45 45 H 1.09005 * 109.63475 * 174.27728 * 22 17 16 46 46 H 1.09001 * 109.63607 * 294.67897 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8713 -0.4818 -3.7320 8 7 2.6274 -1.5509 -3.8526 9 14 1.2492 0.3992 -5.2572 10 1 1.7442 1.7992 -5.2567 11 1 1.7441 -0.3010 -6.4697 12 1 -0.2358 0.3993 -5.2577 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0286 2.4487 15 6 2.0217 -0.6944 3.6703 16 6 1.4921 0.0535 4.8956 17 7 1.9631 -0.6126 6.1172 18 6 1.3577 -1.9431 6.2579 19 6 -0.0911 -1.8186 6.6316 20 6 -0.6131 -0.7292 7.1072 21 6 0.1805 0.5285 7.3255 22 6 1.6766 0.2049 7.3079 23 1 -0.3634 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1301 -0.7216 -1.2490 30 1 1.6767 -1.7489 -1.2492 31 1 2.8618 -1.8824 -4.7335 32 1 3.1300 -0.7208 1.2495 33 1 1.6766 -1.7488 1.2493 34 1 1.8197 0.9437 2.4402 35 1 1.6586 -1.7219 3.6874 36 1 3.1116 -0.6938 3.6869 37 1 1.8549 1.0812 4.8787 38 1 0.4022 0.0525 4.8788 39 1 1.4417 -2.4796 5.3128 40 1 1.8844 -2.4989 7.0337 41 1 -0.7310 -2.6782 6.4981 42 1 -1.6639 -0.7265 7.3567 43 1 -0.0854 0.9622 8.2895 44 1 -0.0456 1.2419 6.5330 45 1 1.9416 -0.3518 8.2068 46 1 2.2539 1.1285 7.2655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355488621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:43 Heat of formation + Delta-G solvation = -13.002535 kcal Electronic energy + Delta-G solvation = -20620.182711 eV Core-core repulsion = 17736.466956 eV Total energy + Delta-G solvation = -2883.715755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.60294 -39.13495 -36.10707 -34.42763 -33.35069 -31.84305 -29.89835 -28.72202 -27.88677 -26.60941 -25.26543 -24.30435 -23.41009 -22.41507 -19.56720 -18.45029 -18.31264 -17.53355 -16.82193 -16.72145 -16.39106 -15.74315 -15.41974 -15.29391 -14.97354 -14.60247 -14.32054 -13.99912 -13.86535 -13.65673 -13.50673 -13.34821 -13.01806 -12.78067 -12.71911 -12.59540 -12.50311 -12.26684 -12.22563 -12.12628 -11.88323 -11.71599 -11.56271 -11.36034 -10.85675 -10.72951 -10.49480 -9.95235 -9.31377 -9.22338 -8.13279 -6.20581 1.29666 1.41394 1.43859 1.51103 2.44318 2.81175 3.20464 3.55354 3.86875 3.98986 4.04689 4.13771 4.19184 4.24010 4.29589 4.35304 4.40116 4.54984 4.67343 4.72848 4.75218 4.79950 4.82013 4.85963 4.94819 4.96674 5.03897 5.08408 5.09288 5.13255 5.22065 5.22553 5.52154 5.54208 5.58967 5.60412 5.65871 5.87771 5.88862 5.93202 6.04581 6.09908 6.17547 6.37462 6.54982 6.94469 7.46744 8.99030 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.043249 B = 0.003123 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.255811 B = 8963.986841 C = 9031.008921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.056 4.056 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.516 4.516 6 H 0.067 0.933 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.085 3.915 14 N -0.681 5.681 15 C 0.066 3.934 16 C 0.064 3.936 17 N -0.538 5.538 18 C 0.073 3.927 19 C -0.196 4.196 20 C -0.161 4.161 21 C -0.128 4.128 22 C 0.052 3.948 23 H 0.067 0.933 24 H 0.039 0.961 25 H 0.028 0.972 26 H 0.036 0.964 27 H 0.047 0.953 28 H 0.068 0.932 29 H -0.017 1.017 30 H -0.017 1.017 31 H 0.260 0.740 32 H 0.017 0.983 33 H 0.054 0.946 34 H 0.344 0.656 35 H 0.062 0.938 36 H 0.029 0.971 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 4.243 23.690 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.056 4.056 3 C -0.179 4.179 4 C 0.003 3.997 5 C -0.554 4.554 6 H 0.085 0.915 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.193 1.193 13 C -0.045 4.045 14 N -0.314 5.314 15 C -0.064 4.064 16 C -0.064 4.064 17 N -0.260 5.260 18 C -0.055 4.055 19 C -0.216 4.216 20 C -0.179 4.179 21 C -0.166 4.166 22 C -0.076 4.076 23 H 0.086 0.914 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.002 0.998 30 H 0.001 0.999 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.164 0.836 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.924 3.756 23.533 24.152 hybrid contribution -0.102 0.072 -1.209 1.216 sum -4.026 3.828 22.324 23.005 Atomic orbital electron populations 1.21497 0.94299 1.00001 1.00532 1.20506 0.96304 0.95727 0.93103 1.21680 0.99462 0.95493 1.01268 1.18997 0.93932 0.94051 0.92740 1.21603 1.30310 1.12013 0.91446 0.91519 1.25934 0.95680 0.95906 1.02617 1.70102 1.38830 1.24960 1.24119 0.85622 0.78926 0.78821 0.78429 1.19179 1.21371 1.19326 1.21785 0.95781 0.97404 0.89497 1.60441 1.63547 1.06654 1.00769 1.21868 0.97202 0.98327 0.88974 1.21922 0.98347 0.97756 0.88366 1.62659 1.57257 1.03444 1.02647 1.21192 0.90363 0.91545 1.02383 1.22948 0.98576 0.99264 1.00776 1.22323 1.00266 0.95169 1.00167 1.21104 0.96167 0.96033 1.03296 1.22330 0.94065 0.98392 0.92817 0.91399 0.94197 0.95273 0.94470 0.93386 0.91289 0.99815 0.99894 0.93148 0.96490 0.92778 0.83609 0.91912 0.95293 0.90423 0.93880 0.90191 0.88793 0.87199 0.87212 0.89059 0.90827 0.89918 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.08 8.06 71.98 0.58 -3.50 16 2 C -0.06 -2.25 0.60 -52.18 -0.03 -2.29 16 3 C -0.12 -4.40 7.89 71.98 0.57 -3.84 16 4 C 0.04 2.13 4.04 29.85 0.12 2.25 16 5 C -0.52 -28.81 7.65 25.60 0.20 -28.62 16 6 H 0.07 3.55 5.68 -2.91 -0.02 3.54 16 7 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 8 N -0.94 -58.00 13.29 21.45 0.28 -57.72 16 9 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.08 2.98 4.65 86.30 0.40 3.38 16 14 N -0.68 -19.02 5.71 -513.88 -2.94 -21.96 16 15 C 0.07 1.61 5.66 86.31 0.49 2.10 16 16 C 0.06 1.31 4.29 86.31 0.37 1.68 16 17 N -0.54 -10.03 5.02 -900.92 -4.53 -14.56 16 18 C 0.07 1.31 5.83 85.39 0.50 1.80 16 19 C -0.20 -3.42 9.37 26.68 0.25 -3.17 16 20 C -0.16 -2.62 9.29 26.73 0.25 -2.38 16 21 C -0.13 -1.78 5.54 29.75 0.16 -1.62 16 22 C 0.05 0.76 6.02 86.26 0.52 1.27 16 23 H 0.07 2.26 7.60 -2.39 -0.02 2.24 16 24 H 0.04 1.63 6.62 -2.39 -0.02 1.61 16 25 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.89 6.62 -2.39 -0.02 1.87 16 28 H 0.07 2.00 6.57 -2.39 -0.02 1.98 16 29 H -0.02 -0.96 8.14 -2.39 -0.02 -0.97 16 30 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 31 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.02 0.61 8.14 -2.38 -0.02 0.60 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.34 8.81 6.77 -89.69 -0.61 8.20 16 35 H 0.06 1.62 6.36 -2.39 -0.02 1.61 16 36 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 38 H 0.04 0.96 6.04 -2.39 -0.01 0.95 16 39 H 0.08 1.56 6.06 -2.39 -0.01 1.54 16 40 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.11 1.79 8.06 -2.91 -0.02 1.76 16 42 H 0.11 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.07 1.11 7.16 -2.39 -0.02 1.09 16 45 H 0.08 1.10 8.08 -2.38 -0.02 1.08 16 46 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -63.15 346.71 0.00 -63.15 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.32 Total: 17.09 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 4.84 Total: -32.73 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -7.18 Total: -94.24 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -63.15 0.00 -63.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355488621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.147 kcal (2) G-P(sol) polarization free energy of solvation -63.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds