Wall clock time and date at job start Mon Mar 30 2020 00:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47084 * 2 1 4 4 C 1.36739 * 127.13436 * 88.60720 * 3 2 1 5 5 C 1.50702 * 126.34917 * 359.70414 * 4 3 2 6 6 C 1.52991 * 109.47411 * 119.99756 * 5 4 3 7 7 C 1.53001 * 109.46693 * 239.99837 * 5 4 3 8 8 N 1.30293 * 107.30404 * 179.73549 * 4 3 2 9 9 N 1.28529 * 110.05670 * 359.97438 * 8 4 3 10 10 C 1.31222 * 109.85569 * 0.02562 * 9 8 4 11 11 N 1.38582 * 126.46991 * 180.02562 * 10 9 8 12 12 C 1.46898 * 111.00212 * 295.59194 * 11 10 9 13 13 C 1.46897 * 110.99849 * 59.55102 * 11 10 9 14 14 H 1.09005 * 109.46933 * 299.99535 * 13 11 10 15 15 C 1.53002 * 109.47216 * 59.99754 * 13 11 10 16 16 C 1.50703 * 109.47279 * 179.97438 * 13 11 10 17 17 H 1.07999 * 119.99867 * 359.97438 * 16 13 11 18 18 C 1.37876 * 119.99868 * 179.97438 * 16 13 11 19 19 N 1.31509 * 120.00286 * 359.97438 * 18 16 13 20 20 Si 1.86806 * 119.99640 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47282 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47379 * 119.99949 * 20 18 16 23 23 H 1.48501 * 109.46938 * 239.99980 * 20 18 16 24 24 H 1.09006 * 109.47057 * 55.50249 * 1 2 3 25 25 H 1.09005 * 109.47264 * 175.50017 * 1 2 3 26 26 H 1.08995 * 109.47153 * 295.50041 * 1 2 3 27 27 H 1.09007 * 109.47049 * 239.99755 * 2 1 3 28 28 H 1.09006 * 109.47094 * 120.00762 * 2 1 3 29 29 H 1.09006 * 109.46915 * 359.97438 * 5 4 3 30 30 H 1.09002 * 109.47385 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.47406 * 300.00223 * 6 5 4 32 32 H 1.09006 * 109.47222 * 60.00016 * 6 5 4 33 33 H 1.08999 * 109.46931 * 60.00062 * 7 5 4 34 34 H 1.09002 * 109.46960 * 179.97438 * 7 5 4 35 35 H 1.08993 * 109.47048 * 299.99622 * 7 5 4 36 36 H 1.09001 * 109.47111 * 65.98438 * 12 11 10 37 37 H 1.09004 * 109.46921 * 185.97985 * 12 11 10 38 38 H 1.09000 * 109.47473 * 305.98054 * 12 11 10 39 39 H 1.08997 * 109.47078 * 180.02562 * 15 13 11 40 40 H 1.09001 * 109.46852 * 299.99913 * 15 13 11 41 41 H 1.08997 * 109.47133 * 60.00305 * 15 13 11 42 42 H 0.97001 * 120.00046 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2685 2.1683 1.0898 5 6 2.0867 1.7782 2.5340 6 6 3.4286 1.8778 3.2621 7 6 1.0774 2.7202 3.1935 8 7 2.6926 3.3184 0.6481 9 7 2.7276 3.3114 -0.6367 10 6 2.3239 2.1469 -1.0873 11 7 2.2271 1.7664 -2.4163 12 6 1.2224 2.5723 -3.1228 13 6 3.5329 1.8493 -3.0840 14 1 3.8991 2.8750 -3.0400 15 6 4.5257 0.9225 -2.3795 16 6 3.3884 1.4284 -4.5239 17 1 2.4232 1.1289 -4.9047 18 6 4.4886 1.4257 -5.3550 19 7 5.6638 1.7909 -4.8914 20 14 4.3093 0.9047 -7.1399 21 1 2.8945 0.5438 -7.4106 22 1 4.7128 2.0261 -8.0259 23 1 5.1783 -0.2706 -7.4021 24 1 -0.3633 0.5821 -0.8470 25 1 -0.3634 -1.0245 -0.0806 26 1 -0.3633 0.4424 0.9275 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5140 0.8900 29 1 1.7177 0.7540 2.5900 30 1 3.2971 1.5952 4.3066 31 1 4.1477 1.2068 2.7922 32 1 3.7972 2.9022 3.2061 33 1 0.1214 2.6491 2.6748 34 1 0.9455 2.4378 4.2380 35 1 1.4460 3.7444 3.1375 36 1 1.5571 3.6084 -3.1724 37 1 1.0903 2.1844 -4.1328 38 1 0.2743 2.5220 -2.5874 39 1 5.4947 0.9843 -2.8747 40 1 4.6303 1.2266 -1.3380 41 1 4.1595 -0.1032 -2.4236 42 1 6.4378 1.7886 -5.4760 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358661672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:22 Heat of formation + Delta-G solvation = 75.850041 kcal Electronic energy + Delta-G solvation = -21539.223141 eV Core-core repulsion = 18555.819979 eV Total energy + Delta-G solvation = -2983.403162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.46900 -37.11356 -35.67029 -34.95626 -32.83135 -30.29448 -29.43176 -28.58878 -27.20729 -25.55559 -24.40245 -23.85908 -23.05765 -21.45736 -19.73046 -19.09881 -16.86249 -16.38230 -15.83027 -15.29049 -15.03031 -14.58966 -14.14348 -14.01510 -13.74557 -13.26774 -13.13348 -12.81802 -12.35595 -12.23563 -12.17273 -11.89809 -11.70000 -11.42659 -11.27071 -11.14570 -10.99612 -10.97511 -10.87152 -10.75472 -10.32560 -10.26669 -10.10564 -9.92534 -9.66987 -9.06865 -8.52664 -8.33710 -7.69028 -6.07619 -4.14191 2.26523 2.74919 3.26586 3.34466 3.37498 3.41753 4.33062 4.43501 4.64891 4.71593 4.81001 5.00850 5.09760 5.23517 5.24778 5.29087 5.52602 5.57568 5.65461 5.71994 5.77584 5.80757 5.85758 5.98650 6.03512 6.14432 6.20201 6.35482 6.40780 6.55475 6.62876 6.75470 6.91860 6.96848 7.20250 7.40465 7.67078 7.76128 7.92742 8.18612 8.47754 8.89887 9.33567 9.50789 10.99436 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.030443 B = 0.005312 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.541146 B = 5269.816540 C = 5536.495093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.469 5.469 4 C 0.160 3.840 5 C 0.001 3.999 6 C -0.141 4.141 7 C -0.139 4.139 8 N -0.289 5.289 9 N -0.322 5.322 10 C 0.381 3.619 11 N -0.473 5.473 12 C 0.052 3.948 13 C 0.225 3.775 14 H 0.021 0.979 15 C -0.129 4.129 16 C -0.510 4.510 17 H 0.067 0.933 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.088 0.912 38 H 0.041 0.959 39 H 0.091 0.909 40 H 0.001 0.999 41 H 0.031 0.969 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 -4.600 13.321 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.162 5.162 4 C -0.107 4.107 5 C -0.020 4.020 6 C -0.199 4.199 7 C -0.197 4.197 8 N -0.129 5.129 9 N -0.165 5.165 10 C 0.025 3.975 11 N -0.200 5.200 12 C -0.095 4.095 13 C 0.120 3.880 14 H 0.039 0.961 15 C -0.188 4.188 16 C -0.549 4.549 17 H 0.085 0.915 18 C -0.140 4.140 19 N -0.526 5.526 20 Si 0.728 3.272 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.020 0.980 41 H 0.050 0.950 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.794 -3.654 13.203 16.279 hybrid contribution -0.164 -0.991 -1.065 1.464 sum -8.958 -4.645 12.138 15.784 Atomic orbital electron populations 1.22101 0.94291 1.02994 1.02727 1.21746 0.95363 0.79650 1.04733 1.46443 1.49980 1.13524 1.06296 1.24527 1.05286 0.89810 0.91101 1.19443 0.97709 0.99715 0.85095 1.21798 0.95387 1.03465 0.99265 1.21781 0.98005 1.00253 0.99650 1.73870 1.17439 1.17764 1.03819 1.74689 1.20814 1.18260 1.02708 1.22802 0.98283 0.86781 0.89614 1.59238 1.13331 1.53050 0.94401 1.22174 0.92175 0.95871 0.99304 1.19421 0.80340 0.95977 0.92239 0.96138 1.21796 1.03097 0.98133 0.95725 1.21091 0.95340 1.45353 0.93094 0.91513 1.24921 0.95108 0.95127 0.98853 1.69911 0.99497 1.47523 1.35708 0.86404 0.78204 0.78177 0.84394 1.19666 1.20977 1.21014 0.91539 0.90631 0.92504 0.87661 0.89699 0.90204 0.91880 0.92628 0.91234 0.92833 0.91891 0.91271 0.94678 0.89308 0.93977 0.89013 0.97992 0.95001 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 10.24 37.16 0.38 -1.37 16 2 C 0.11 1.42 6.57 -4.04 -0.03 1.39 16 3 N -0.47 -8.14 2.81 -114.08 -0.32 -8.46 16 4 C 0.16 2.70 6.58 -154.02 -1.01 1.69 16 5 C 0.00 0.02 3.29 -91.77 -0.30 -0.28 16 6 C -0.14 -1.56 9.17 37.15 0.34 -1.21 16 7 C -0.14 -1.43 9.18 37.16 0.34 -1.09 16 8 N -0.29 -5.98 12.18 32.99 0.40 -5.57 16 9 N -0.32 -7.50 12.13 30.31 0.37 -7.13 16 10 C 0.38 8.12 5.03 -318.87 -1.60 6.52 16 11 N -0.47 -10.47 4.66 -176.08 -0.82 -11.29 16 12 C 0.05 1.06 9.14 60.06 0.55 1.61 16 13 C 0.22 5.80 2.00 -68.86 -0.14 5.66 16 14 H 0.02 0.62 8.09 -51.93 -0.42 0.20 16 15 C -0.13 -3.27 8.84 37.16 0.33 -2.95 16 16 C -0.51 -13.63 7.95 -34.44 -0.27 -13.90 16 17 H 0.07 1.73 6.40 -52.49 -0.34 1.40 16 18 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 19 N -0.89 -25.30 11.32 55.43 0.63 -24.68 16 20 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.11 1.52 8.14 -51.92 -0.42 1.10 16 28 H 0.08 0.88 7.30 -51.93 -0.38 0.50 16 29 H 0.08 0.77 6.98 -51.93 -0.36 0.41 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.09 1.77 6.31 -51.93 -0.33 1.44 16 38 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 40 H 0.00 0.03 7.22 -51.93 -0.38 -0.35 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -31.54 339.73 -8.30 -39.84 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.14 Total: -1.32 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.51 Total: -2.35 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.26 Total: -57.12 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.54 -8.30 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358661672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.690 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds