Wall clock time and date at job start Mon Mar 30 2020 00:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47084 * 2 1 4 4 C 1.36739 * 127.13436 * 88.60720 * 3 2 1 5 5 C 1.50702 * 126.34917 * 359.70414 * 4 3 2 6 6 C 1.52991 * 109.47411 * 119.99756 * 5 4 3 7 7 C 1.53001 * 109.46693 * 239.99837 * 5 4 3 8 8 N 1.30293 * 107.30404 * 179.73549 * 4 3 2 9 9 N 1.28529 * 110.05670 * 359.97438 * 8 4 3 10 10 C 1.31222 * 109.85569 * 0.02562 * 9 8 4 11 11 N 1.38582 * 126.46991 * 180.02562 * 10 9 8 12 12 C 1.46898 * 111.00212 * 295.59194 * 11 10 9 13 13 C 1.46897 * 110.99849 * 59.55102 * 11 10 9 14 14 H 1.09005 * 109.46933 * 299.99535 * 13 11 10 15 15 C 1.53002 * 109.47216 * 59.99754 * 13 11 10 16 16 C 1.50703 * 109.47279 * 179.97438 * 13 11 10 17 17 H 1.07999 * 119.99867 * 359.97438 * 16 13 11 18 18 C 1.37876 * 119.99868 * 179.97438 * 16 13 11 19 19 N 1.31509 * 120.00286 * 359.97438 * 18 16 13 20 20 Si 1.86806 * 119.99640 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47282 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47379 * 119.99949 * 20 18 16 23 23 H 1.48501 * 109.46938 * 239.99980 * 20 18 16 24 24 H 1.09006 * 109.47057 * 55.50249 * 1 2 3 25 25 H 1.09005 * 109.47264 * 175.50017 * 1 2 3 26 26 H 1.08995 * 109.47153 * 295.50041 * 1 2 3 27 27 H 1.09007 * 109.47049 * 239.99755 * 2 1 3 28 28 H 1.09006 * 109.47094 * 120.00762 * 2 1 3 29 29 H 1.09006 * 109.46915 * 359.97438 * 5 4 3 30 30 H 1.09002 * 109.47385 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.47406 * 300.00223 * 6 5 4 32 32 H 1.09006 * 109.47222 * 60.00016 * 6 5 4 33 33 H 1.08999 * 109.46931 * 60.00062 * 7 5 4 34 34 H 1.09002 * 109.46960 * 179.97438 * 7 5 4 35 35 H 1.08993 * 109.47048 * 299.99622 * 7 5 4 36 36 H 1.09001 * 109.47111 * 65.98438 * 12 11 10 37 37 H 1.09004 * 109.46921 * 185.97985 * 12 11 10 38 38 H 1.09000 * 109.47473 * 305.98054 * 12 11 10 39 39 H 1.08997 * 109.47078 * 180.02562 * 15 13 11 40 40 H 1.09001 * 109.46852 * 299.99913 * 15 13 11 41 41 H 1.08997 * 109.47133 * 60.00305 * 15 13 11 42 42 H 0.97001 * 120.00046 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2685 2.1683 1.0898 5 6 2.0867 1.7782 2.5340 6 6 3.4286 1.8778 3.2621 7 6 1.0774 2.7202 3.1935 8 7 2.6926 3.3184 0.6481 9 7 2.7276 3.3114 -0.6367 10 6 2.3239 2.1469 -1.0873 11 7 2.2271 1.7664 -2.4163 12 6 1.2224 2.5723 -3.1228 13 6 3.5329 1.8493 -3.0840 14 1 3.8991 2.8750 -3.0400 15 6 4.5257 0.9225 -2.3795 16 6 3.3884 1.4284 -4.5239 17 1 2.4232 1.1289 -4.9047 18 6 4.4886 1.4257 -5.3550 19 7 5.6638 1.7909 -4.8914 20 14 4.3093 0.9047 -7.1399 21 1 2.8945 0.5438 -7.4106 22 1 4.7128 2.0261 -8.0259 23 1 5.1783 -0.2706 -7.4021 24 1 -0.3633 0.5821 -0.8470 25 1 -0.3634 -1.0245 -0.0806 26 1 -0.3633 0.4424 0.9275 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5140 0.8900 29 1 1.7177 0.7540 2.5900 30 1 3.2971 1.5952 4.3066 31 1 4.1477 1.2068 2.7922 32 1 3.7972 2.9022 3.2061 33 1 0.1214 2.6491 2.6748 34 1 0.9455 2.4378 4.2380 35 1 1.4460 3.7444 3.1375 36 1 1.5571 3.6084 -3.1724 37 1 1.0903 2.1844 -4.1328 38 1 0.2743 2.5220 -2.5874 39 1 5.4947 0.9843 -2.8747 40 1 4.6303 1.2266 -1.3380 41 1 4.1595 -0.1032 -2.4236 42 1 6.4378 1.7886 -5.4760 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358661672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:21 Heat of formation + Delta-G solvation = 57.174304 kcal Electronic energy + Delta-G solvation = -21540.032982 eV Core-core repulsion = 18555.819979 eV Total energy + Delta-G solvation = -2984.213003 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.95303 -38.87381 -36.86927 -36.10489 -34.80739 -31.48594 -31.37820 -30.13111 -28.04267 -27.51437 -26.18003 -25.04901 -24.29787 -23.18789 -21.16134 -20.52185 -18.52654 -18.08126 -17.39237 -16.87293 -16.49616 -16.13739 -15.54532 -15.13764 -15.00435 -14.98112 -14.27984 -14.09589 -13.94322 -13.67737 -13.25120 -13.07763 -12.98256 -12.88927 -12.72793 -12.66196 -12.43751 -12.27842 -12.21427 -12.18549 -12.15830 -12.03793 -11.91771 -11.42222 -11.09252 -11.00002 -10.60249 -9.89799 -9.55146 -8.15897 -6.30474 0.82308 1.38930 1.44320 1.46324 1.58167 1.87228 2.41196 3.02043 3.16449 3.33670 3.68465 3.87069 4.07226 4.12434 4.18163 4.32671 4.38752 4.45067 4.57184 4.60868 4.68139 4.74012 4.80533 4.82509 4.84009 4.88820 4.95280 4.99385 5.03881 5.06725 5.19300 5.22649 5.34820 5.35814 5.42651 5.57545 5.64864 5.90742 5.98253 6.13253 6.63530 6.80614 7.39066 7.81469 8.91768 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.030443 B = 0.005312 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.541146 B = 5269.816540 C = 5536.495093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.097 3.903 3 N -0.464 5.464 4 C 0.183 3.817 5 C 0.000 4.000 6 C -0.138 4.138 7 C -0.134 4.134 8 N -0.330 5.330 9 N -0.368 5.368 10 C 0.359 3.641 11 N -0.464 5.464 12 C 0.057 3.943 13 C 0.235 3.765 14 H -0.032 1.032 15 C -0.109 4.109 16 C -0.521 4.521 17 H 0.075 0.925 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.971 3.029 21 H -0.259 1.259 22 H -0.284 1.284 23 H -0.280 1.280 24 H 0.042 0.958 25 H 0.105 0.895 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.012 0.988 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.066 0.934 40 H -0.003 1.003 41 H 0.042 0.958 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.252 -6.952 14.702 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 N -0.157 5.157 4 C -0.086 4.086 5 C -0.021 4.021 6 C -0.197 4.197 7 C -0.192 4.192 8 N -0.169 5.169 9 N -0.211 5.211 10 C 0.002 3.998 11 N -0.190 5.190 12 C -0.091 4.091 13 C 0.129 3.871 14 H -0.015 1.015 15 C -0.167 4.167 16 C -0.559 4.559 17 H 0.093 0.907 18 C -0.187 4.187 19 N -0.562 5.562 20 Si 0.796 3.204 21 H -0.182 1.182 22 H -0.210 1.210 23 H -0.205 1.205 24 H 0.061 0.939 25 H 0.124 0.876 26 H 0.089 0.911 27 H 0.108 0.892 28 H 0.139 0.861 29 H 0.133 0.867 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.031 0.969 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.016 0.984 41 H 0.061 0.939 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.732 -6.022 14.604 19.097 hybrid contribution 0.414 -0.250 -1.351 1.435 sum -10.318 -6.272 13.253 17.929 Atomic orbital electron populations 1.22065 0.92103 1.04620 1.02418 1.22175 0.97162 0.77279 1.05781 1.46698 1.49181 1.14754 1.05035 1.25622 1.01571 0.88389 0.92971 1.19855 0.98778 1.01899 0.81553 1.21799 0.94524 1.01978 1.01348 1.21766 0.97102 0.98701 1.01640 1.73781 1.19991 1.20284 1.02859 1.74559 1.22107 1.20091 1.04324 1.22692 0.99921 0.87396 0.89833 1.59170 1.11609 1.53188 0.95031 1.22174 0.92781 0.94343 0.99775 1.19088 0.82212 0.92920 0.92901 1.01462 1.21537 1.01757 0.98527 0.94924 1.21356 0.95745 1.45183 0.93596 0.90724 1.25808 0.94649 0.94967 1.03296 1.70063 1.00334 1.48490 1.37330 0.85308 0.78782 0.77609 0.78728 1.18238 1.21035 1.20530 0.93881 0.87633 0.91096 0.89230 0.86079 0.86723 0.88074 0.93689 0.93408 0.92920 0.88274 0.93393 0.96870 0.89071 0.91273 0.91513 0.98444 0.93892 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 10.24 71.98 0.74 -2.06 16 2 C 0.10 2.29 6.57 86.38 0.57 2.86 16 3 N -0.46 -15.65 2.81 -514.83 -1.45 -17.10 16 4 C 0.18 5.99 6.58 137.64 0.91 6.89 16 5 C 0.00 0.00 3.29 -11.54 -0.04 -0.04 16 6 C -0.14 -2.70 9.17 71.98 0.66 -2.04 16 7 C -0.13 -2.35 9.18 71.98 0.66 -1.69 16 8 N -0.33 -13.99 12.18 -49.54 -0.60 -14.60 16 9 N -0.37 -17.89 12.13 -58.00 -0.70 -18.59 16 10 C 0.36 15.63 5.03 260.11 1.31 16.94 16 11 N -0.46 -20.97 4.66 -710.99 -3.31 -24.28 16 12 C 0.06 2.33 9.14 127.69 1.17 3.50 16 13 C 0.23 12.59 2.00 44.17 0.09 12.68 16 14 H -0.03 -2.05 8.09 -2.38 -0.02 -2.07 16 15 C -0.11 -5.70 8.84 71.98 0.64 -5.07 16 16 C -0.52 -28.23 7.95 25.60 0.20 -28.03 16 17 H 0.07 3.86 6.40 -2.91 -0.02 3.84 16 18 C 0.01 0.65 5.30 84.66 0.45 1.10 16 19 N -0.92 -54.09 11.32 21.45 0.24 -53.85 16 20 Si 0.97 42.83 29.54 68.60 2.03 44.85 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 24 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 28 H 0.12 1.97 7.30 -2.38 -0.02 1.96 16 29 H 0.11 1.61 6.98 -2.38 -0.02 1.59 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.09 3.65 6.31 -2.39 -0.02 3.63 16 38 H 0.07 2.43 8.10 -2.39 -0.02 2.41 16 39 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 40 H 0.00 -0.18 7.22 -2.39 -0.02 -0.20 16 41 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -72.83 339.73 4.53 -68.30 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.98 Total: 10.22 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 7.34 Total: 5.04 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -5.82 Total: -128.42 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.83 4.53 -68.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358661672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.479 kcal (2) G-P(sol) polarization free energy of solvation -72.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds