Wall clock time and date at job start Mon Mar 30 2020 00:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47503 * 2 1 4 4 C 1.36740 * 127.14195 * 92.51866 * 3 2 1 5 5 C 1.50699 * 126.34370 * 359.97438 * 4 3 2 6 6 C 1.52999 * 109.47221 * 119.71497 * 5 4 3 7 7 C 1.53000 * 109.46764 * 239.71489 * 5 4 3 8 8 N 1.30291 * 107.30508 * 179.73686 * 4 3 2 9 9 N 1.28526 * 110.05530 * 0.26013 * 8 4 3 10 10 C 1.31213 * 109.86349 * 0.02562 * 9 8 4 11 11 N 1.38580 * 126.47730 * 180.02562 * 10 9 8 12 12 C 1.46907 * 110.99986 * 306.33934 * 11 10 9 13 13 C 1.46901 * 111.00060 * 70.29173 * 11 10 9 14 14 H 1.08997 * 109.47333 * 55.00156 * 13 11 10 15 15 C 1.53008 * 109.46826 * 295.00107 * 13 11 10 16 16 C 1.50700 * 109.47127 * 175.00375 * 13 11 10 17 17 H 1.07998 * 120.00357 * 95.26761 * 16 13 11 18 18 C 1.37877 * 120.00035 * 275.26542 * 16 13 11 19 19 N 1.31511 * 120.00170 * 185.93839 * 18 16 13 20 20 Si 1.86801 * 119.99935 * 5.93578 * 18 16 13 21 21 H 1.48498 * 109.47153 * 84.92866 * 20 18 16 22 22 H 1.48498 * 109.47221 * 204.93358 * 20 18 16 23 23 H 1.48505 * 109.47243 * 324.93348 * 20 18 16 24 24 H 1.09000 * 109.47451 * 184.97977 * 1 2 3 25 25 H 1.09003 * 109.46639 * 304.97598 * 1 2 3 26 26 H 1.08999 * 109.47410 * 64.97109 * 1 2 3 27 27 H 1.09000 * 109.47007 * 239.99325 * 2 1 3 28 28 H 1.09000 * 109.47062 * 119.99924 * 2 1 3 29 29 H 1.09005 * 109.46960 * 359.71480 * 5 4 3 30 30 H 1.09000 * 109.47023 * 179.97438 * 6 5 4 31 31 H 1.08994 * 109.46982 * 59.99609 * 6 5 4 32 32 H 1.09001 * 109.46944 * 299.99602 * 6 5 4 33 33 H 1.08995 * 109.47471 * 299.99813 * 7 5 4 34 34 H 1.09001 * 109.47389 * 60.00471 * 7 5 4 35 35 H 1.09004 * 109.46477 * 180.02562 * 7 5 4 36 36 H 1.08995 * 109.46899 * 54.06987 * 12 11 10 37 37 H 1.08996 * 109.47008 * 174.07290 * 12 11 10 38 38 H 1.09000 * 109.46294 * 294.07263 * 12 11 10 39 39 H 1.08994 * 109.47219 * 305.06464 * 15 13 11 40 40 H 1.08999 * 109.46795 * 65.06788 * 15 13 11 41 41 H 1.09002 * 109.46605 * 185.06877 * 15 13 11 42 42 H 0.96996 * 119.99975 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3388 2.1436 1.0890 5 6 2.2553 1.7187 2.5324 6 6 3.6441 1.8005 3.1693 7 6 1.2952 2.6447 3.2818 8 7 2.7345 3.3036 0.6470 9 7 2.6811 3.3277 -0.6369 10 6 2.2444 2.1750 -1.0867 11 7 2.0554 1.8270 -2.4147 12 6 1.1997 2.8057 -3.0988 13 6 3.3419 1.6771 -3.1078 14 1 3.9630 0.9607 -2.5702 15 6 4.0535 3.0306 -3.1606 16 6 3.1020 1.1807 -4.5104 17 1 3.0409 1.8829 -5.3287 18 6 2.9605 -0.1699 -4.7489 19 7 2.8682 -0.6134 -5.9836 20 14 2.9000 -1.3697 -3.3185 21 1 1.5095 -1.4580 -2.8049 22 1 3.3443 -2.7102 -3.7776 23 1 3.7983 -0.8946 -2.2356 24 1 -0.3634 -1.0238 0.0892 25 1 -0.3633 0.5891 0.8421 26 1 -0.3634 0.4348 -0.9311 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8895 0.6934 2.5888 30 1 3.5836 1.4936 4.2134 31 1 4.0098 2.8257 3.1128 32 1 4.3280 1.1407 2.6353 33 1 1.6610 3.6699 3.2254 34 1 0.3058 2.5864 2.8282 35 1 1.2353 2.3377 4.3260 36 1 1.6147 3.8051 -2.9682 37 1 1.1532 2.5676 -4.1614 38 1 0.1964 2.7705 -2.6742 39 1 3.3956 3.7693 -3.6183 40 1 4.3073 3.3472 -2.1490 41 1 4.9644 2.9393 -3.7521 42 1 2.7690 -1.5636 -6.1514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358661673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:24 Heat of formation + Delta-G solvation = 79.327576 kcal Electronic energy + Delta-G solvation = -21917.008368 eV Core-core repulsion = 18933.756003 eV Total energy + Delta-G solvation = -2983.252365 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.53298 -37.41234 -35.70941 -35.04631 -32.58588 -30.39229 -29.93027 -28.38698 -27.25217 -25.59386 -25.18427 -23.93524 -23.05545 -21.05924 -19.63529 -19.19585 -17.06861 -16.79267 -15.78452 -15.54556 -15.23655 -14.46421 -14.25565 -14.04299 -13.73556 -13.33569 -13.20686 -12.79465 -12.63023 -12.28647 -12.21263 -12.06158 -11.77217 -11.60472 -11.38826 -11.31471 -11.17678 -11.08493 -10.92564 -10.83259 -10.63132 -10.24157 -9.81141 -9.77540 -9.64502 -9.16914 -8.79605 -8.43481 -7.74186 -6.23518 -4.27125 2.20305 2.69680 3.20025 3.23746 3.27757 3.32970 4.30681 4.38401 4.50087 4.67791 4.75404 4.98524 5.07740 5.18757 5.24470 5.30363 5.53434 5.54941 5.63899 5.70707 5.74064 5.76117 5.85679 5.94291 6.08221 6.13723 6.15663 6.22054 6.32807 6.38837 6.52174 6.61510 6.62828 6.77683 6.95735 7.13339 7.23243 7.49451 7.79179 8.12628 8.45160 8.81670 9.26125 9.39925 10.87110 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.023252 B = 0.007301 C = 0.006493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.897367 B = 3834.035896 C = 4311.243535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.102 3.898 3 N -0.470 5.470 4 C 0.160 3.840 5 C 0.000 4.000 6 C -0.140 4.140 7 C -0.138 4.138 8 N -0.290 5.290 9 N -0.322 5.322 10 C 0.370 3.630 11 N -0.474 5.474 12 C 0.049 3.951 13 C 0.175 3.825 14 H 0.047 0.953 15 C -0.164 4.164 16 C -0.498 4.498 17 H 0.079 0.921 18 C 0.085 3.915 19 N -0.887 5.887 20 Si 0.887 3.113 21 H -0.267 1.267 22 H -0.295 1.295 23 H -0.271 1.271 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.036 0.964 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 -0.054 16.350 16.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.021 4.021 3 N -0.163 5.163 4 C -0.108 4.108 5 C -0.021 4.021 6 C -0.199 4.199 7 C -0.196 4.196 8 N -0.130 5.130 9 N -0.166 5.166 10 C 0.015 3.985 11 N -0.202 5.202 12 C -0.099 4.099 13 C 0.072 3.928 14 H 0.065 0.935 15 C -0.223 4.223 16 C -0.537 4.537 17 H 0.097 0.903 18 C -0.120 4.120 19 N -0.523 5.523 20 Si 0.716 3.284 21 H -0.193 1.193 22 H -0.222 1.222 23 H -0.196 1.196 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.863 0.730 16.176 16.647 hybrid contribution -0.237 -1.540 0.509 1.639 sum -4.100 -0.810 16.685 17.201 Atomic orbital electron populations 1.22088 0.93836 1.02848 1.03361 1.21883 0.96042 0.79672 1.04500 1.46491 1.49843 1.13510 1.06501 1.24532 1.05113 0.89999 0.91118 1.19461 0.97906 0.99642 0.85119 1.21795 0.94856 1.03375 0.99827 1.21771 0.98413 1.00267 0.99156 1.73848 1.18278 1.16937 1.03958 1.74677 1.20225 1.19028 1.02621 1.23244 0.98597 0.86770 0.89937 1.60281 1.19871 1.46158 0.93845 1.22132 0.94093 0.92804 1.00831 1.20062 0.83985 0.94231 0.94477 0.93499 1.22330 1.00660 0.98745 1.00549 1.20850 1.49757 0.92852 0.90231 0.90280 1.25059 0.93149 0.98443 0.95372 1.69908 1.48166 1.14981 1.19275 0.86754 0.78988 0.79468 0.83141 1.19256 1.22158 1.19635 0.90684 0.92284 0.91004 0.88416 0.89525 0.90202 0.91839 0.91238 0.92722 0.91279 0.92779 0.91869 0.94540 0.88698 0.93788 0.93126 0.93361 0.92964 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 10.24 37.16 0.38 -1.72 16 2 C 0.10 1.55 6.65 -4.05 -0.03 1.52 16 3 N -0.47 -8.47 2.81 -114.09 -0.32 -8.79 16 4 C 0.16 2.67 6.58 -154.02 -1.01 1.66 16 5 C 0.00 0.00 3.28 -91.77 -0.30 -0.30 16 6 C -0.14 -1.51 9.18 37.16 0.34 -1.17 16 7 C -0.14 -1.41 9.18 37.16 0.34 -1.07 16 8 N -0.29 -5.72 12.18 32.99 0.40 -5.32 16 9 N -0.32 -6.97 9.81 30.32 0.30 -6.67 16 10 C 0.37 7.74 6.21 -318.87 -1.98 5.76 16 11 N -0.47 -10.39 4.27 -176.07 -0.75 -11.14 16 12 C 0.05 0.99 8.68 60.07 0.52 1.51 16 13 C 0.18 4.17 1.69 -68.86 -0.12 4.06 16 14 H 0.05 1.19 5.75 -51.93 -0.30 0.89 16 15 C -0.16 -3.64 8.39 37.16 0.31 -3.33 16 16 C -0.50 -13.30 7.57 -34.44 -0.26 -13.56 16 17 H 0.08 2.27 8.05 -52.49 -0.42 1.85 16 18 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 19 N -0.89 -25.73 13.96 55.43 0.77 -24.95 16 20 Si 0.89 20.95 25.03 -169.99 -4.26 16.69 16 21 H -0.27 -5.98 6.80 56.52 0.38 -5.60 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.29 6.14 56.52 0.35 -5.94 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.10 1.74 5.27 -51.93 -0.27 1.47 16 28 H 0.09 1.03 7.12 -51.93 -0.37 0.66 16 29 H 0.08 0.80 6.89 -51.93 -0.36 0.44 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.04 0.73 6.45 -51.93 -0.34 0.40 16 37 H 0.09 2.02 6.81 -51.93 -0.35 1.67 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 1.09 6.34 -51.93 -0.33 0.76 16 40 H 0.05 1.07 6.25 -51.93 -0.32 0.75 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -30.56 328.01 -7.73 -38.30 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.92 Total: 1.35 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -1.90 Total: -4.41 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.40 Total: -56.87 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.26 Total: 16.69 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.56 -7.73 -38.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358661673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.625 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds