Wall clock time and date at job start Mon Mar 30 2020 00:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47503 * 2 1 4 4 C 1.36740 * 127.14195 * 92.51866 * 3 2 1 5 5 C 1.50699 * 126.34370 * 359.97438 * 4 3 2 6 6 C 1.52999 * 109.47221 * 119.71497 * 5 4 3 7 7 C 1.53000 * 109.46764 * 239.71489 * 5 4 3 8 8 N 1.30291 * 107.30508 * 179.73686 * 4 3 2 9 9 N 1.28526 * 110.05530 * 0.26013 * 8 4 3 10 10 C 1.31213 * 109.86349 * 0.02562 * 9 8 4 11 11 N 1.38580 * 126.47730 * 180.02562 * 10 9 8 12 12 C 1.46907 * 110.99986 * 306.33934 * 11 10 9 13 13 C 1.46901 * 111.00060 * 70.29173 * 11 10 9 14 14 H 1.08997 * 109.47333 * 55.00156 * 13 11 10 15 15 C 1.53008 * 109.46826 * 295.00107 * 13 11 10 16 16 C 1.50700 * 109.47127 * 175.00375 * 13 11 10 17 17 H 1.07998 * 120.00357 * 95.26761 * 16 13 11 18 18 C 1.37877 * 120.00035 * 275.26542 * 16 13 11 19 19 N 1.31511 * 120.00170 * 185.93839 * 18 16 13 20 20 Si 1.86801 * 119.99935 * 5.93578 * 18 16 13 21 21 H 1.48498 * 109.47153 * 84.92866 * 20 18 16 22 22 H 1.48498 * 109.47221 * 204.93358 * 20 18 16 23 23 H 1.48505 * 109.47243 * 324.93348 * 20 18 16 24 24 H 1.09000 * 109.47451 * 184.97977 * 1 2 3 25 25 H 1.09003 * 109.46639 * 304.97598 * 1 2 3 26 26 H 1.08999 * 109.47410 * 64.97109 * 1 2 3 27 27 H 1.09000 * 109.47007 * 239.99325 * 2 1 3 28 28 H 1.09000 * 109.47062 * 119.99924 * 2 1 3 29 29 H 1.09005 * 109.46960 * 359.71480 * 5 4 3 30 30 H 1.09000 * 109.47023 * 179.97438 * 6 5 4 31 31 H 1.08994 * 109.46982 * 59.99609 * 6 5 4 32 32 H 1.09001 * 109.46944 * 299.99602 * 6 5 4 33 33 H 1.08995 * 109.47471 * 299.99813 * 7 5 4 34 34 H 1.09001 * 109.47389 * 60.00471 * 7 5 4 35 35 H 1.09004 * 109.46477 * 180.02562 * 7 5 4 36 36 H 1.08995 * 109.46899 * 54.06987 * 12 11 10 37 37 H 1.08996 * 109.47008 * 174.07290 * 12 11 10 38 38 H 1.09000 * 109.46294 * 294.07263 * 12 11 10 39 39 H 1.08994 * 109.47219 * 305.06464 * 15 13 11 40 40 H 1.08999 * 109.46795 * 65.06788 * 15 13 11 41 41 H 1.09002 * 109.46605 * 185.06877 * 15 13 11 42 42 H 0.96996 * 119.99975 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3388 2.1436 1.0890 5 6 2.2553 1.7187 2.5324 6 6 3.6441 1.8005 3.1693 7 6 1.2952 2.6447 3.2818 8 7 2.7345 3.3036 0.6470 9 7 2.6811 3.3277 -0.6369 10 6 2.2444 2.1750 -1.0867 11 7 2.0554 1.8270 -2.4147 12 6 1.1997 2.8057 -3.0988 13 6 3.3419 1.6771 -3.1078 14 1 3.9630 0.9607 -2.5702 15 6 4.0535 3.0306 -3.1606 16 6 3.1020 1.1807 -4.5104 17 1 3.0409 1.8829 -5.3287 18 6 2.9605 -0.1699 -4.7489 19 7 2.8682 -0.6134 -5.9836 20 14 2.9000 -1.3697 -3.3185 21 1 1.5095 -1.4580 -2.8049 22 1 3.3443 -2.7102 -3.7776 23 1 3.7983 -0.8946 -2.2356 24 1 -0.3634 -1.0238 0.0892 25 1 -0.3633 0.5891 0.8421 26 1 -0.3634 0.4348 -0.9311 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8895 0.6934 2.5888 30 1 3.5836 1.4936 4.2134 31 1 4.0098 2.8257 3.1128 32 1 4.3280 1.1407 2.6353 33 1 1.6610 3.6699 3.2254 34 1 0.3058 2.5864 2.8282 35 1 1.2353 2.3377 4.3260 36 1 1.6147 3.8051 -2.9682 37 1 1.1532 2.5676 -4.1614 38 1 0.1964 2.7705 -2.6742 39 1 3.3956 3.7693 -3.6183 40 1 4.3073 3.3472 -2.1490 41 1 4.9644 2.9393 -3.7521 42 1 2.7690 -1.5636 -6.1514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358661673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:23 Heat of formation + Delta-G solvation = 61.651991 kcal Electronic energy + Delta-G solvation = -21917.774838 eV Core-core repulsion = 18933.756003 eV Total energy + Delta-G solvation = -2984.018836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.97899 -39.13673 -36.90419 -36.16298 -34.61644 -31.92207 -31.43474 -29.88839 -28.04523 -27.53334 -26.92152 -25.15620 -24.20239 -22.73026 -21.04040 -20.64952 -19.10236 -18.11380 -17.31567 -17.08944 -16.62557 -16.09620 -15.50233 -15.26223 -15.09388 -15.05448 -14.55780 -14.20323 -13.87696 -13.85146 -13.49639 -13.21273 -13.00731 -12.93847 -12.81217 -12.78659 -12.48804 -12.44620 -12.25771 -12.16203 -12.00083 -11.86922 -11.72612 -11.32569 -11.25506 -11.01077 -10.85746 -9.95520 -9.45471 -8.34336 -6.43214 0.78474 1.29150 1.31764 1.37727 1.43346 1.84354 2.33156 2.78328 3.28228 3.33184 3.57794 3.82781 3.96710 4.09246 4.16301 4.20498 4.31605 4.35819 4.42966 4.52907 4.58586 4.69478 4.74034 4.74697 4.82493 4.85092 4.95003 4.98850 5.02146 5.06606 5.09854 5.12299 5.20447 5.30884 5.35154 5.42755 5.50673 5.78834 5.95362 6.22166 6.55248 6.70417 7.27310 7.78874 8.79473 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.023252 B = 0.007301 C = 0.006493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.897367 B = 3834.035896 C = 4311.243535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.091 3.909 3 N -0.470 5.470 4 C 0.183 3.817 5 C -0.003 4.003 6 C -0.137 4.137 7 C -0.133 4.133 8 N -0.323 5.323 9 N -0.345 5.345 10 C 0.346 3.654 11 N -0.474 5.474 12 C 0.056 3.944 13 C 0.186 3.814 14 H 0.035 0.965 15 C -0.153 4.153 16 C -0.500 4.500 17 H 0.044 0.956 18 C 0.035 3.965 19 N -0.932 5.932 20 Si 0.946 3.054 21 H -0.247 1.247 22 H -0.294 1.294 23 H -0.266 1.266 24 H 0.103 0.897 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.127 0.873 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 -1.429 20.108 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.031 4.031 3 N -0.163 5.163 4 C -0.086 4.086 5 C -0.024 4.024 6 C -0.195 4.195 7 C -0.191 4.191 8 N -0.163 5.163 9 N -0.189 5.189 10 C -0.010 4.010 11 N -0.201 5.201 12 C -0.091 4.091 13 C 0.082 3.918 14 H 0.053 0.947 15 C -0.212 4.212 16 C -0.539 4.539 17 H 0.063 0.937 18 C -0.166 4.166 19 N -0.570 5.570 20 Si 0.772 3.228 21 H -0.171 1.171 22 H -0.220 1.220 23 H -0.191 1.191 24 H 0.122 0.878 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.145 0.855 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.793 -0.633 19.948 20.526 hybrid contribution 0.050 -1.024 -0.579 1.178 sum -4.743 -1.658 19.370 20.011 Atomic orbital electron populations 1.22069 0.92064 1.04753 1.02583 1.22224 0.97564 0.78056 1.05222 1.46718 1.49374 1.14418 1.05809 1.25572 1.01529 0.88706 0.92752 1.19862 0.99172 1.01500 0.81843 1.21790 0.93755 1.02234 1.01741 1.21755 0.97477 0.98975 1.00914 1.73798 1.20394 1.18937 1.03155 1.74566 1.20570 1.19860 1.03874 1.23017 1.00555 0.87622 0.89840 1.59901 1.18611 1.46809 0.94778 1.22059 0.94888 0.92342 0.99794 1.19765 0.84879 0.94359 0.92805 0.94708 1.22206 1.00454 0.98091 1.00450 1.20863 1.49586 0.92525 0.90894 0.93744 1.25804 0.92830 1.00202 0.97787 1.70029 1.50078 1.15505 1.21415 0.85846 0.80132 0.76927 0.79940 1.17092 1.22038 1.19116 0.87812 0.90743 0.93688 0.90966 0.85464 0.87224 0.88313 0.92965 0.93651 0.93032 0.93094 0.88459 0.94778 0.90405 0.91885 0.93079 0.93331 0.93050 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 10.24 71.98 0.74 -2.72 16 2 C 0.09 2.43 6.65 86.38 0.57 3.00 16 3 N -0.47 -15.83 2.81 -514.86 -1.45 -17.27 16 4 C 0.18 5.64 6.58 137.64 0.91 6.54 16 5 C 0.00 -0.06 3.28 -11.54 -0.04 -0.09 16 6 C -0.14 -2.44 9.18 71.98 0.66 -1.78 16 7 C -0.13 -2.20 9.18 71.98 0.66 -1.54 16 8 N -0.32 -12.41 12.18 -49.54 -0.60 -13.01 16 9 N -0.35 -14.80 9.81 -58.00 -0.57 -15.37 16 10 C 0.35 14.20 6.21 260.11 1.62 15.82 16 11 N -0.47 -20.73 4.27 -710.98 -3.03 -23.77 16 12 C 0.06 2.32 8.68 127.69 1.11 3.43 16 13 C 0.19 8.98 1.69 44.17 0.07 9.05 16 14 H 0.03 1.77 5.75 -2.39 -0.01 1.75 16 15 C -0.15 -6.93 8.39 71.98 0.60 -6.32 16 16 C -0.50 -27.54 7.57 25.60 0.19 -27.35 16 17 H 0.04 2.69 8.05 -2.91 -0.02 2.67 16 18 C 0.03 1.94 5.47 84.66 0.46 2.40 16 19 N -0.93 -55.54 13.96 21.45 0.30 -55.24 16 20 Si 0.95 43.12 25.03 68.60 1.72 44.83 16 21 H -0.25 -10.33 6.80 99.48 0.68 -9.65 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.27 -11.80 6.14 99.48 0.61 -11.19 16 24 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 2.35 5.27 -2.39 -0.01 2.33 16 28 H 0.13 2.33 7.12 -2.39 -0.02 2.31 16 29 H 0.11 1.54 6.89 -2.38 -0.02 1.52 16 30 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.03 1.39 6.45 -2.39 -0.02 1.38 16 37 H 0.08 3.44 6.81 -2.39 -0.02 3.42 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.05 2.26 6.34 -2.39 -0.02 2.25 16 40 H 0.05 2.19 6.25 -2.39 -0.01 2.17 16 41 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -68.80 328.01 4.79 -64.01 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.87 Total: 15.37 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 7.56 Total: 0.45 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -5.35 Total: -124.66 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.72 Total: 44.83 kcal Total: -68.80 4.79 -64.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358661673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.663 kcal (2) G-P(sol) polarization free energy of solvation -68.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds