Wall clock time and date at job start Mon Mar 30 2020 00:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00011 * 2 1 4 4 H 1.09007 * 108.83185 * 31.49250 * 3 2 1 5 5 C 1.54167 * 108.77388 * 273.03403 * 3 2 1 6 6 C 1.53818 * 111.97613 * 197.73499 * 5 3 2 7 7 C 1.50816 * 111.62143 * 319.04175 * 6 5 3 8 8 N 1.47634 * 108.04952 * 95.05347 * 7 6 5 9 9 C 1.46899 * 110.99747 * 150.34672 * 8 7 6 10 10 C 1.53005 * 109.46743 * 196.38564 * 9 8 7 11 11 H 1.08995 * 109.47059 * 303.45874 * 10 9 8 12 12 C 1.47201 * 109.47002 * 63.45746 * 10 9 8 13 13 N 7.32727 * 147.20843 * 5.94816 * 2 1 3 14 14 C 1.53004 * 109.47037 * 183.45227 * 10 9 8 15 15 C 1.50692 * 109.47149 * 175.00139 * 14 10 9 16 16 H 1.08010 * 119.99856 * 0.02562 * 15 14 10 17 17 C 1.37876 * 120.00104 * 180.02562 * 15 14 10 18 18 N 1.31508 * 119.99928 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99838 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47384 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47096 * 120.00056 * 19 17 15 22 22 H 1.48498 * 109.47338 * 239.99740 * 19 17 15 23 23 C 1.39776 * 114.76165 * 277.20302 * 8 7 6 24 24 C 1.50752 * 108.85721 * 150.00173 * 3 2 1 25 25 H 1.08996 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47083 * 300.00226 * 1 2 3 27 27 H 1.08999 * 109.47190 * 60.00230 * 1 2 3 28 28 H 1.09000 * 108.97846 * 318.37814 * 5 3 2 29 29 H 1.09004 * 108.98485 * 77.17282 * 5 3 2 30 30 H 1.08999 * 109.05343 * 198.48221 * 6 5 3 31 31 H 1.09005 * 109.04428 * 79.59031 * 6 5 3 32 32 H 1.09000 * 109.74447 * 335.41283 * 7 6 5 33 33 H 1.08999 * 109.74466 * 214.69525 * 7 6 5 34 34 H 1.09001 * 109.47268 * 316.38532 * 9 8 7 35 35 H 1.09000 * 109.47137 * 76.38816 * 9 8 7 36 36 H 1.08994 * 109.47149 * 295.00397 * 14 10 9 37 37 H 1.08999 * 109.46344 * 55.00469 * 14 10 9 38 38 H 0.97002 * 120.00012 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.01994 * 182.86647 * 23 8 7 40 40 H 1.09006 * 109.01652 * 301.68348 * 23 8 7 41 41 H 1.08995 * 109.54906 * 93.85627 * 24 3 2 42 42 H 1.09005 * 109.61969 * 333.62012 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3497 1.9847 0.5390 5 6 2.1415 1.7901 -1.4576 6 6 3.1312 2.9603 -1.5882 7 6 2.9801 3.9449 -0.4558 8 7 3.9673 3.5989 0.5860 9 6 4.3883 4.7937 1.3298 10 6 5.6753 4.4884 2.0988 11 1 5.5136 3.6309 2.7519 12 6 6.7553 4.1829 1.1463 13 7 7.5887 3.9470 0.4112 14 6 6.0670 5.7043 2.9409 15 6 7.2633 5.3624 3.7909 16 1 7.7010 4.3765 3.7358 17 6 7.7993 6.3081 4.6391 18 7 7.2668 7.5087 4.7058 19 14 9.2819 5.8840 5.6933 20 1 9.6883 4.4794 5.4339 21 1 10.4058 6.7941 5.3561 22 1 8.9308 6.0414 7.1275 23 6 3.5670 2.5817 1.4571 24 6 3.3371 1.2480 0.7133 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.4875 0.9623 -2.0766 29 1 1.1631 2.1134 -1.8132 30 1 2.9522 3.4740 -2.5327 31 1 4.1482 2.5680 -1.5852 32 1 1.9728 3.8812 -0.0444 33 1 3.1669 4.9555 -0.8192 34 1 4.5673 5.6117 0.6320 35 1 3.6049 5.0796 2.0316 36 1 6.3148 6.5372 2.2830 37 1 5.2326 5.9848 3.5838 38 1 7.6437 8.1739 5.3028 39 1 4.3381 2.4382 2.2138 40 1 2.6403 2.8789 1.9482 41 1 4.1351 1.0933 -0.0129 42 1 3.3321 0.4269 1.4302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374683185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:18 Heat of formation + Delta-G solvation = -28.851563 kcal Electronic energy + Delta-G solvation = -20621.622989 eV Core-core repulsion = 17601.386874 eV Total energy + Delta-G solvation = -3020.236115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.94136 -37.93420 -36.11940 -34.13502 -33.21841 -31.98719 -31.30852 -27.55098 -26.88773 -25.43770 -24.71841 -22.91977 -21.69599 -20.78339 -19.70247 -17.06959 -16.79088 -16.40537 -15.81024 -15.67052 -15.22475 -14.87978 -14.47335 -14.33334 -14.05113 -13.45391 -13.24871 -12.88909 -12.60409 -12.23019 -12.21544 -11.99579 -11.86015 -11.60565 -11.32002 -11.19519 -11.16399 -11.03843 -11.00666 -10.77111 -10.64202 -10.47842 -10.35969 -10.09477 -9.67435 -9.51382 -9.20021 -8.46007 -8.07309 -6.09749 -4.12644 3.28674 3.37044 3.41878 3.58981 3.75386 3.86410 3.99267 4.41646 4.62828 4.67639 4.90801 4.92631 5.00679 5.06862 5.13940 5.18141 5.28629 5.29106 5.41893 5.43007 5.50514 5.54677 5.63939 5.71027 5.73851 5.83558 5.96567 5.99418 6.04345 6.11580 6.26991 6.34084 6.40362 6.53433 7.05867 7.22062 7.42377 7.51006 7.55709 7.85923 8.23490 8.61872 8.92466 9.52990 11.01204 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031657 B = 0.003908 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.262332 B = 7163.521830 C = 7359.204933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.091 3.909 4 H 0.054 0.946 5 C -0.138 4.138 6 C -0.116 4.116 7 C 0.064 3.936 8 N -0.559 5.559 9 C 0.068 3.932 10 C 0.008 3.992 11 H 0.100 0.900 12 C 0.257 3.743 13 N -0.480 5.480 14 C 0.031 3.969 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.072 3.928 24 C -0.117 4.117 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.262 0.738 39 H 0.086 0.914 40 H 0.021 0.979 41 H 0.081 0.919 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.750 -9.651 -8.611 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C 0.034 3.966 4 H 0.072 0.928 5 C -0.176 4.176 6 C -0.154 4.154 7 C -0.062 4.062 8 N -0.283 5.283 9 C -0.060 4.060 10 C -0.014 4.014 11 H 0.118 0.882 12 C -0.059 4.059 13 N -0.157 5.157 14 C -0.008 4.008 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.057 4.057 24 C -0.155 4.155 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.039 0.961 41 H 0.100 0.900 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.005 -10.193 -9.864 19.933 hybrid contribution -0.423 0.493 1.315 1.467 sum -14.428 -9.700 -8.549 19.374 Atomic orbital electron populations 1.22745 0.81642 1.02415 0.99760 1.87959 1.19234 1.28504 1.95098 1.22156 0.95277 0.83796 0.95407 0.92780 1.22403 0.99560 0.98784 0.96806 1.21370 1.00669 0.95525 0.97837 1.21824 0.93181 0.98916 0.92311 1.58836 1.42684 1.09441 1.17334 1.22241 0.95772 0.91367 0.96622 1.19297 0.86866 1.03255 0.91991 0.88239 1.28812 0.93178 0.91547 0.92402 1.80979 1.11746 1.10698 1.12283 1.19172 0.97521 0.90202 0.93866 1.21183 1.13492 0.98698 1.22925 0.92440 1.24950 0.97122 0.94923 0.96990 1.69945 1.40995 1.03959 1.38168 0.86542 0.82780 0.78700 0.80111 1.19642 1.20980 1.20870 1.20995 0.99483 0.90706 0.94563 1.21591 0.96015 0.97642 1.00244 0.89935 0.94186 0.94317 0.91250 0.92639 0.91820 0.90145 0.94274 0.90610 0.90168 0.92837 0.95566 0.94497 0.92870 0.89615 0.96103 0.90027 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.78 101.05 1.09 1.34 16 2 O -0.39 -4.41 10.19 -35.23 -0.36 -4.77 16 3 C 0.09 0.97 2.12 -27.25 -0.06 0.91 16 4 H 0.05 0.56 6.20 -51.92 -0.32 0.24 16 5 C -0.14 -1.36 5.40 -25.70 -0.14 -1.50 16 6 C -0.12 -1.21 5.41 -27.40 -0.15 -1.36 16 7 C 0.06 0.71 5.36 -4.52 -0.02 0.68 16 8 N -0.56 -7.28 3.60 -240.00 -0.86 -8.14 16 9 C 0.07 0.98 4.34 -3.82 -0.02 0.97 16 10 C 0.01 0.14 2.12 -93.40 -0.20 -0.05 16 11 H 0.10 1.71 6.25 -51.93 -0.32 1.39 16 12 C 0.26 5.35 13.63 -20.76 -0.28 5.07 16 13 N -0.48 -10.87 18.54 42.15 0.78 -10.09 16 14 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 15 C -0.52 -13.92 8.60 -34.44 -0.30 -14.21 16 16 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 19 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.07 0.88 4.81 -6.74 -0.03 0.84 16 24 C -0.12 -1.36 5.35 -27.11 -0.15 -1.50 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.30 8.07 -51.92 -0.42 -0.12 16 27 H 0.04 0.28 8.07 -51.93 -0.42 -0.14 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.00 7.26 -51.93 -0.38 0.62 16 32 H 0.04 0.40 6.66 -51.93 -0.35 0.05 16 33 H 0.08 0.80 7.50 -51.93 -0.39 0.41 16 34 H 0.08 1.16 7.62 -51.93 -0.40 0.77 16 35 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.09 1.10 5.91 -51.93 -0.31 0.80 16 40 H 0.02 0.24 7.54 -51.93 -0.39 -0.15 16 41 H 0.08 1.04 7.11 -51.93 -0.37 0.67 16 42 H 0.08 0.91 7.99 -51.93 -0.42 0.50 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -30.04 333.29 -7.14 -37.18 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -6.96 Total: -4.16 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.47 Total: -6.61 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.65 Total: -42.93 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.36 Total: -4.77 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.04 -7.14 -37.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374683185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.329 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds