Wall clock time and date at job start Mon Mar 30 2020 00:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00011 * 2 1 4 4 H 1.09007 * 108.83185 * 31.49250 * 3 2 1 5 5 C 1.54167 * 108.77388 * 273.03403 * 3 2 1 6 6 C 1.53818 * 111.97613 * 197.73499 * 5 3 2 7 7 C 1.50816 * 111.62143 * 319.04175 * 6 5 3 8 8 N 1.47634 * 108.04952 * 95.05347 * 7 6 5 9 9 C 1.46899 * 110.99747 * 150.34672 * 8 7 6 10 10 C 1.53005 * 109.46743 * 196.38564 * 9 8 7 11 11 H 1.08995 * 109.47059 * 303.45874 * 10 9 8 12 12 C 1.47201 * 109.47002 * 63.45746 * 10 9 8 13 13 N 7.32727 * 147.20843 * 5.94816 * 2 1 3 14 14 C 1.53004 * 109.47037 * 183.45227 * 10 9 8 15 15 C 1.50692 * 109.47149 * 175.00139 * 14 10 9 16 16 H 1.08010 * 119.99856 * 0.02562 * 15 14 10 17 17 C 1.37876 * 120.00104 * 180.02562 * 15 14 10 18 18 N 1.31508 * 119.99928 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99838 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47384 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47096 * 120.00056 * 19 17 15 22 22 H 1.48498 * 109.47338 * 239.99740 * 19 17 15 23 23 C 1.39776 * 114.76165 * 277.20302 * 8 7 6 24 24 C 1.50752 * 108.85721 * 150.00173 * 3 2 1 25 25 H 1.08996 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47083 * 300.00226 * 1 2 3 27 27 H 1.08999 * 109.47190 * 60.00230 * 1 2 3 28 28 H 1.09000 * 108.97846 * 318.37814 * 5 3 2 29 29 H 1.09004 * 108.98485 * 77.17282 * 5 3 2 30 30 H 1.08999 * 109.05343 * 198.48221 * 6 5 3 31 31 H 1.09005 * 109.04428 * 79.59031 * 6 5 3 32 32 H 1.09000 * 109.74447 * 335.41283 * 7 6 5 33 33 H 1.08999 * 109.74466 * 214.69525 * 7 6 5 34 34 H 1.09001 * 109.47268 * 316.38532 * 9 8 7 35 35 H 1.09000 * 109.47137 * 76.38816 * 9 8 7 36 36 H 1.08994 * 109.47149 * 295.00397 * 14 10 9 37 37 H 1.08999 * 109.46344 * 55.00469 * 14 10 9 38 38 H 0.97002 * 120.00012 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.01994 * 182.86647 * 23 8 7 40 40 H 1.09006 * 109.01652 * 301.68348 * 23 8 7 41 41 H 1.08995 * 109.54906 * 93.85627 * 24 3 2 42 42 H 1.09005 * 109.61969 * 333.62012 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3497 1.9847 0.5390 5 6 2.1415 1.7901 -1.4576 6 6 3.1312 2.9603 -1.5882 7 6 2.9801 3.9449 -0.4558 8 7 3.9673 3.5989 0.5860 9 6 4.3883 4.7937 1.3298 10 6 5.6753 4.4884 2.0988 11 1 5.5136 3.6309 2.7519 12 6 6.7553 4.1829 1.1463 13 7 7.5887 3.9470 0.4112 14 6 6.0670 5.7043 2.9409 15 6 7.2633 5.3624 3.7909 16 1 7.7010 4.3765 3.7358 17 6 7.7993 6.3081 4.6391 18 7 7.2668 7.5087 4.7058 19 14 9.2819 5.8840 5.6933 20 1 9.6883 4.4794 5.4339 21 1 10.4058 6.7941 5.3561 22 1 8.9308 6.0414 7.1275 23 6 3.5670 2.5817 1.4571 24 6 3.3371 1.2480 0.7133 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.4875 0.9623 -2.0766 29 1 1.1631 2.1134 -1.8132 30 1 2.9522 3.4740 -2.5327 31 1 4.1482 2.5680 -1.5852 32 1 1.9728 3.8812 -0.0444 33 1 3.1669 4.9555 -0.8192 34 1 4.5673 5.6117 0.6320 35 1 3.6049 5.0796 2.0316 36 1 6.3148 6.5372 2.2830 37 1 5.2326 5.9848 3.5838 38 1 7.6437 8.1739 5.3028 39 1 4.3381 2.4382 2.2138 40 1 2.6403 2.8789 1.9482 41 1 4.1351 1.0933 -0.0129 42 1 3.3321 0.4269 1.4302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374683185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:17 Heat of formation + Delta-G solvation = -46.653471 kcal Electronic energy + Delta-G solvation = -20622.394938 eV Core-core repulsion = 17601.386874 eV Total energy + Delta-G solvation = -3021.008064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88412 -38.94391 -37.55793 -35.66530 -34.75290 -33.09225 -32.68464 -28.96269 -27.69313 -26.70810 -25.59715 -24.32353 -23.36348 -21.76123 -20.53195 -18.58179 -18.16812 -17.78010 -16.82516 -16.60951 -16.50400 -16.07613 -15.84251 -15.36626 -14.94915 -14.62180 -14.46619 -14.29685 -14.14208 -13.76002 -13.42001 -13.13583 -13.02055 -12.96469 -12.84733 -12.56790 -12.46480 -12.37230 -12.18436 -12.13728 -11.89782 -11.70252 -11.55480 -11.31297 -11.16185 -11.02336 -10.54504 -10.43533 -9.06386 -8.18775 -6.26516 1.39332 1.42775 1.53022 2.10116 2.17947 2.42206 2.84249 2.96785 3.16935 3.38377 3.79576 3.83902 4.06055 4.12755 4.24823 4.32115 4.32338 4.46055 4.52315 4.55139 4.64476 4.68070 4.72091 4.79930 4.82882 4.85184 4.89620 4.94017 5.05629 5.14505 5.20034 5.24389 5.38388 5.48380 5.49627 5.63958 5.80756 6.14654 6.26459 6.33262 6.56519 6.85012 6.96768 7.42066 8.92253 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031657 B = 0.003908 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.262332 B = 7163.521830 C = 7359.204933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.093 3.907 4 H 0.062 0.938 5 C -0.132 4.132 6 C -0.111 4.111 7 C 0.065 3.935 8 N -0.570 5.570 9 C 0.078 3.922 10 C 0.018 3.982 11 H 0.114 0.886 12 C 0.268 3.732 13 N -0.515 5.515 14 C 0.038 3.962 15 C -0.538 4.538 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.947 3.053 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.072 3.928 24 C -0.112 4.112 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.002 0.998 37 H 0.036 0.964 38 H 0.264 0.736 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.064 0.936 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.188 -10.168 -8.622 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C 0.035 3.965 4 H 0.080 0.920 5 C -0.170 4.170 6 C -0.149 4.149 7 C -0.061 4.061 8 N -0.294 5.294 9 C -0.050 4.050 10 C -0.004 4.004 11 H 0.132 0.868 12 C -0.048 4.048 13 N -0.193 5.193 14 C -0.001 4.001 15 C -0.576 4.576 16 H 0.070 0.930 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.773 3.227 20 H -0.195 1.195 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.057 4.057 24 C -0.150 4.150 25 H 0.112 0.888 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.021 0.979 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.457 -10.724 -9.880 21.249 hybrid contribution 0.000 0.623 1.299 1.441 sum -15.457 -10.101 -8.582 20.361 Atomic orbital electron populations 1.22930 0.80040 1.03553 1.00594 1.87927 1.21064 1.28812 1.95244 1.22114 0.94690 0.83919 0.95750 0.91984 1.22348 1.00138 0.98212 0.96275 1.21311 0.99462 0.95693 0.98431 1.21892 0.93290 0.99269 0.91679 1.58764 1.44105 1.08928 1.17648 1.22070 0.94123 0.91992 0.96805 1.19268 0.87801 1.01672 0.91666 0.86810 1.29308 0.92920 0.90586 0.91996 1.80976 1.12790 1.11857 1.13669 1.18988 0.96290 0.91259 0.93521 1.21579 1.14488 0.98374 1.23130 0.92953 1.25685 0.99634 0.94985 0.98370 1.70029 1.42372 1.04754 1.39120 0.85666 0.79695 0.78273 0.79076 1.19467 1.21158 1.19773 1.20983 0.99662 0.90693 0.94347 1.21511 0.96331 0.97306 0.99867 0.88793 0.93455 0.93313 0.92040 0.90981 0.90407 0.92534 0.92763 0.90100 0.90147 0.91091 0.97918 0.94606 0.92727 0.90646 0.94820 0.91679 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.78 113.37 1.22 1.57 16 2 O -0.41 -8.63 10.19 -148.98 -1.52 -10.15 16 3 C 0.09 1.80 2.12 30.26 0.06 1.86 16 4 H 0.06 1.10 6.20 -2.38 -0.01 1.09 16 5 C -0.13 -2.34 5.40 31.26 0.17 -2.18 16 6 C -0.11 -2.13 5.41 30.16 0.16 -1.97 16 7 C 0.06 1.27 5.36 85.45 0.46 1.73 16 8 N -0.57 -13.92 3.60 -913.21 -3.29 -17.21 16 9 C 0.08 2.14 4.34 86.31 0.37 2.52 16 10 C 0.02 0.63 2.12 -12.60 -0.03 0.61 16 11 H 0.11 3.78 6.25 -2.39 -0.01 3.76 16 12 C 0.27 11.08 13.63 89.44 1.22 12.30 16 13 N -0.52 -23.40 18.54 20.01 0.37 -23.03 16 14 C 0.04 1.74 4.42 29.85 0.13 1.88 16 15 C -0.54 -28.44 8.60 25.60 0.22 -28.22 16 16 H 0.05 2.77 7.59 -2.91 -0.02 2.74 16 17 C 0.01 0.67 5.46 84.66 0.46 1.13 16 18 N -0.92 -52.70 13.29 21.45 0.28 -52.41 16 19 Si 0.95 43.48 29.54 68.60 2.03 45.50 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 C 0.07 1.64 4.81 88.07 0.42 2.07 16 24 C -0.11 -2.48 5.35 30.35 0.16 -2.32 16 25 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 0.59 8.07 -2.38 -0.02 0.57 16 27 H 0.05 0.58 8.07 -2.39 -0.02 0.56 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.05 8.13 -2.38 -0.02 1.03 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.37 7.26 -2.38 -0.02 1.36 16 32 H 0.05 0.92 6.66 -2.39 -0.02 0.91 16 33 H 0.08 1.52 7.50 -2.39 -0.02 1.50 16 34 H 0.08 2.21 7.62 -2.39 -0.02 2.19 16 35 H 0.07 1.72 8.09 -2.39 -0.02 1.70 16 36 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 39 H 0.08 1.85 5.91 -2.39 -0.01 1.83 16 40 H 0.03 0.69 7.54 -2.38 -0.02 0.67 16 41 H 0.06 1.65 7.11 -2.39 -0.02 1.63 16 42 H 0.08 1.75 7.99 -2.38 -0.02 1.73 16 Total: -1.00 -63.40 333.29 3.91 -59.50 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 0.99 Total: 6.82 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 5.04 Total: -9.03 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -2.63 Total: -92.65 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -1.52 Total: -10.15 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -63.40 3.91 -59.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374683185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.842 kcal (2) G-P(sol) polarization free energy of solvation -63.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds