Wall clock time and date at job start Mon Mar 30 2020 00:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00210 * 2 1 4 4 H 1.09006 * 108.73512 * 331.69485 * 3 2 1 5 5 C 1.50464 * 108.77226 * 89.99623 * 3 2 1 6 6 C 1.54510 * 108.85419 * 212.95702 * 5 3 2 7 7 C 1.45867 * 111.58952 * 282.80630 * 6 5 3 8 8 N 1.47807 * 112.91452 * 61.32872 * 7 6 5 9 9 C 1.46901 * 110.99483 * 153.86857 * 8 7 6 10 10 C 1.53000 * 109.47011 * 177.85826 * 9 8 7 11 11 H 1.09003 * 109.47202 * 301.03843 * 10 9 8 12 12 C 1.47203 * 109.47290 * 61.03258 * 10 9 8 13 13 N 5.63072 * 98.99706 * 316.71653 * 2 1 3 14 14 C 1.52997 * 109.47347 * 181.03601 * 10 9 8 15 15 C 1.50704 * 109.47168 * 175.00014 * 14 10 9 16 16 H 1.07996 * 120.00029 * 359.97438 * 15 14 10 17 17 C 1.37879 * 119.99848 * 179.97438 * 15 14 10 18 18 N 1.31509 * 119.99894 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99860 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46776 * 90.00027 * 19 17 15 21 21 H 1.48500 * 109.47085 * 330.00474 * 19 17 15 22 22 H 1.48492 * 109.47090 * 209.99950 * 19 17 15 23 23 C 1.44272 * 109.46252 * 276.73860 * 8 7 6 24 24 C 1.54065 * 111.98411 * 96.43954 * 23 8 7 25 25 H 1.08996 * 109.46840 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47111 * 299.99998 * 1 2 3 27 27 H 1.09001 * 109.46757 * 60.00539 * 1 2 3 28 28 H 1.09001 * 109.57099 * 93.14637 * 5 3 2 29 29 H 1.09002 * 109.57068 * 332.76541 * 5 3 2 30 30 H 1.08995 * 109.05591 * 162.26820 * 6 5 3 31 31 H 1.08998 * 109.00029 * 43.31258 * 6 5 3 32 32 H 1.09003 * 108.79360 * 300.44344 * 7 6 5 33 33 H 1.08996 * 108.79126 * 182.21327 * 7 6 5 34 34 H 1.08998 * 109.47132 * 57.86141 * 9 8 7 35 35 H 1.09001 * 109.46975 * 297.85448 * 9 8 7 36 36 H 1.09000 * 109.47235 * 54.99851 * 14 10 9 37 37 H 1.08998 * 109.47007 * 295.00131 * 14 10 9 38 38 H 0.97002 * 120.00458 * 0.02562 * 18 17 15 39 39 H 1.08999 * 108.98077 * 217.08447 * 23 8 7 40 40 H 1.09003 * 108.98003 * 335.79364 * 23 8 7 41 41 H 1.09000 * 108.91979 * 198.19144 * 24 23 8 42 42 H 1.09003 * 108.84590 * 79.58687 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3224 1.9949 -0.4895 5 6 2.2072 1.7478 1.4246 6 6 2.0184 3.2793 1.5025 7 6 3.1896 3.9906 1.0025 8 7 3.4770 3.6991 -0.4178 9 6 4.1999 4.8121 -1.0477 10 6 4.5258 4.4524 -2.4986 11 1 5.1317 3.5465 -2.5212 12 6 3.2749 4.2244 -3.2405 13 7 2.3096 4.0486 -3.8130 14 6 5.3012 5.6009 -3.1470 15 6 5.7285 5.1980 -4.5350 16 1 5.4729 4.2205 -4.9162 17 6 6.4457 6.0776 -5.3180 18 7 6.7565 7.2681 -4.8538 19 14 6.9760 5.5780 -7.0381 20 1 5.9213 5.9594 -8.0115 21 1 7.1844 4.1084 -7.0846 22 1 8.2436 6.2690 -7.3855 23 6 4.2308 2.4727 -0.5139 24 6 3.3255 1.2607 -0.8055 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.2135 1.4867 1.7522 29 1 1.4739 1.2565 2.0641 30 1 1.8453 3.5642 2.5402 31 1 1.1500 3.5606 0.9068 32 1 4.0550 3.7067 1.6013 33 1 3.0240 5.0621 1.1145 34 1 5.1254 4.9987 -0.5030 35 1 3.5786 5.7074 -1.0261 36 1 6.1825 5.8285 -2.5473 37 1 4.6634 6.4829 -3.2049 38 1 6.4815 7.5275 -3.9605 39 1 4.9635 2.5688 -1.3151 40 1 4.7560 2.3048 0.4264 41 1 3.8644 0.3479 -0.5518 42 1 3.0881 1.2464 -1.8693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374683186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:20 Heat of formation + Delta-G solvation = -29.118259 kcal Electronic energy + Delta-G solvation = -20898.375780 eV Core-core repulsion = 17878.128100 eV Total energy + Delta-G solvation = -3020.247680 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.85089 -37.90558 -36.23228 -34.23981 -33.38425 -32.20094 -31.21687 -27.45987 -26.75089 -25.32705 -24.50907 -22.81540 -21.96457 -20.73335 -19.82907 -17.25288 -16.85122 -16.54675 -16.07027 -15.65206 -15.13270 -14.72965 -14.39176 -13.84720 -13.79565 -13.59694 -13.39695 -13.18828 -12.78264 -12.39001 -12.16696 -12.02907 -12.01188 -11.54030 -11.39370 -11.30676 -11.05370 -10.99136 -10.93206 -10.66263 -10.64204 -10.45235 -10.23775 -10.10048 -9.88101 -9.56780 -8.68365 -8.42116 -8.28719 -6.44836 -4.16158 3.43112 3.44835 3.60526 3.64255 3.69636 3.73587 3.87981 4.49405 4.66689 4.78030 4.81615 4.93200 5.08720 5.13807 5.21380 5.27718 5.29234 5.33429 5.34174 5.46413 5.53676 5.56693 5.60117 5.67009 5.73896 5.81813 5.85138 5.95542 6.03493 6.10062 6.21737 6.25055 6.30696 6.37390 7.06030 7.09014 7.16615 7.21207 7.23794 8.01386 8.33958 8.51869 8.77787 9.55057 10.96043 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028413 B = 0.004434 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.233697 B = 6313.356737 C = 6807.039866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.395 6.395 3 C 0.098 3.902 4 H 0.064 0.936 5 C -0.135 4.135 6 C -0.114 4.114 7 C 0.054 3.946 8 N -0.535 5.535 9 C 0.062 3.938 10 C 0.012 3.988 11 H 0.104 0.896 12 C 0.255 3.745 13 N -0.473 5.473 14 C 0.018 3.982 15 C -0.606 4.606 16 H 0.051 0.949 17 C 0.021 3.979 18 N -0.909 5.909 19 Si 1.068 2.932 20 H -0.288 1.288 21 H -0.287 1.287 22 H -0.283 1.283 23 C 0.045 3.955 24 C -0.104 4.104 25 H 0.081 0.919 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.028 0.972 37 H 0.017 0.983 38 H 0.269 0.731 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.871 -9.753 15.169 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.314 6.314 3 C 0.041 3.959 4 H 0.082 0.918 5 C -0.173 4.173 6 C -0.152 4.152 7 C -0.073 4.073 8 N -0.259 5.259 9 C -0.066 4.066 10 C -0.010 4.010 11 H 0.121 0.879 12 C -0.062 4.062 13 N -0.150 5.150 14 C -0.020 4.020 15 C -0.644 4.644 16 H 0.069 0.931 17 C -0.183 4.183 18 N -0.545 5.545 19 Si 0.896 3.104 20 H -0.214 1.214 21 H -0.213 1.213 22 H -0.209 1.209 23 C -0.084 4.084 24 C -0.143 4.143 25 H 0.099 0.901 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.046 0.954 37 H 0.036 0.964 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.856 -9.713 12.705 17.818 hybrid contribution 0.039 -0.127 1.960 1.964 sum -7.817 -9.840 14.665 19.313 Atomic orbital electron populations 1.22726 0.81615 1.02177 0.99854 1.87883 1.19247 1.29108 1.95179 1.21914 0.95621 0.83581 0.94794 0.91784 1.21878 1.02520 0.95673 0.97222 1.20563 0.99232 0.94725 1.00675 1.21003 0.97920 1.00317 0.88101 1.61685 1.46379 1.03036 1.14768 1.22312 0.97408 0.93677 0.93222 1.19221 0.87874 1.03245 0.90639 0.87862 1.28695 0.93539 0.91909 0.92064 1.80980 1.12951 1.10159 1.10904 1.19283 0.94407 0.91747 0.96603 1.21986 1.39242 1.03390 0.99805 0.93062 1.25781 0.94153 0.93663 1.04718 1.70775 1.44413 1.19737 1.19551 0.83546 0.76818 0.75261 0.74751 1.21435 1.21336 1.20873 1.22070 0.95164 0.89525 1.01624 1.21935 0.94643 0.97498 1.00183 0.90081 0.94398 0.94100 0.91435 0.91564 0.91473 0.91360 0.94309 0.91254 0.92928 0.90029 0.95396 0.96446 0.92024 0.89871 0.93824 0.91165 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.70 101.05 1.08 1.42 16 2 O -0.39 -5.15 10.19 -35.23 -0.36 -5.51 16 3 C 0.10 1.23 2.25 -27.32 -0.06 1.17 16 4 H 0.06 0.90 6.96 -51.93 -0.36 0.54 16 5 C -0.14 -1.41 5.26 -27.20 -0.14 -1.55 16 6 C -0.11 -1.12 5.53 -29.31 -0.16 -1.28 16 7 C 0.05 0.57 4.96 -6.70 -0.03 0.54 16 8 N -0.53 -6.99 3.91 -239.55 -0.94 -7.93 16 9 C 0.06 0.90 4.26 -3.82 -0.02 0.88 16 10 C 0.01 0.22 1.94 -93.41 -0.18 0.04 16 11 H 0.10 1.80 5.81 -51.93 -0.30 1.49 16 12 C 0.26 5.33 13.57 -20.76 -0.28 5.05 16 13 N -0.47 -10.73 18.54 42.15 0.78 -9.95 16 14 C 0.02 0.41 3.74 -27.88 -0.10 0.31 16 15 C -0.61 -16.22 8.60 -34.44 -0.30 -16.52 16 16 H 0.05 1.39 7.59 -52.49 -0.40 0.99 16 17 C 0.02 0.59 5.46 -17.82 -0.10 0.50 16 18 N -0.91 -26.60 13.65 55.43 0.76 -25.85 16 19 Si 1.07 24.99 29.90 -169.99 -5.08 19.91 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.04 0.56 4.87 -4.67 -0.02 0.53 16 24 C -0.10 -1.35 5.77 -25.50 -0.15 -1.50 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.34 7.81 -51.93 -0.41 -0.07 16 27 H 0.04 0.43 8.07 -51.93 -0.42 0.01 16 28 H 0.07 0.70 7.15 -51.93 -0.37 0.32 16 29 H 0.07 0.66 7.57 -51.93 -0.39 0.26 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.74 7.58 -51.93 -0.39 0.35 16 32 H 0.04 0.38 7.24 -51.93 -0.38 0.01 16 33 H 0.07 0.70 7.77 -51.93 -0.40 0.30 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 36 H 0.03 0.63 8.01 -51.93 -0.42 0.21 16 37 H 0.02 0.42 8.01 -51.93 -0.42 0.01 16 38 H 0.27 7.71 7.22 -40.82 -0.29 7.41 16 39 H 0.08 1.09 5.10 -51.93 -0.26 0.82 16 40 H 0.04 0.48 6.51 -51.93 -0.34 0.14 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -30.73 331.63 -7.19 -37.92 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -6.88 Total: -3.17 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.47 Total: -10.42 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.60 Total: -43.72 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.36 Total: -5.51 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.73 -7.19 -37.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374683186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.801 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds