Wall clock time and date at job start Mon Mar 30 2020 00:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00210 * 2 1 4 4 H 1.09006 * 108.73512 * 331.69485 * 3 2 1 5 5 C 1.50464 * 108.77226 * 89.99623 * 3 2 1 6 6 C 1.54510 * 108.85419 * 212.95702 * 5 3 2 7 7 C 1.45867 * 111.58952 * 282.80630 * 6 5 3 8 8 N 1.47807 * 112.91452 * 61.32872 * 7 6 5 9 9 C 1.46901 * 110.99483 * 153.86857 * 8 7 6 10 10 C 1.53000 * 109.47011 * 177.85826 * 9 8 7 11 11 H 1.09003 * 109.47202 * 301.03843 * 10 9 8 12 12 C 1.47203 * 109.47290 * 61.03258 * 10 9 8 13 13 N 5.63072 * 98.99706 * 316.71653 * 2 1 3 14 14 C 1.52997 * 109.47347 * 181.03601 * 10 9 8 15 15 C 1.50704 * 109.47168 * 175.00014 * 14 10 9 16 16 H 1.07996 * 120.00029 * 359.97438 * 15 14 10 17 17 C 1.37879 * 119.99848 * 179.97438 * 15 14 10 18 18 N 1.31509 * 119.99894 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99860 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46776 * 90.00027 * 19 17 15 21 21 H 1.48500 * 109.47085 * 330.00474 * 19 17 15 22 22 H 1.48492 * 109.47090 * 209.99950 * 19 17 15 23 23 C 1.44272 * 109.46252 * 276.73860 * 8 7 6 24 24 C 1.54065 * 111.98411 * 96.43954 * 23 8 7 25 25 H 1.08996 * 109.46840 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47111 * 299.99998 * 1 2 3 27 27 H 1.09001 * 109.46757 * 60.00539 * 1 2 3 28 28 H 1.09001 * 109.57099 * 93.14637 * 5 3 2 29 29 H 1.09002 * 109.57068 * 332.76541 * 5 3 2 30 30 H 1.08995 * 109.05591 * 162.26820 * 6 5 3 31 31 H 1.08998 * 109.00029 * 43.31258 * 6 5 3 32 32 H 1.09003 * 108.79360 * 300.44344 * 7 6 5 33 33 H 1.08996 * 108.79126 * 182.21327 * 7 6 5 34 34 H 1.08998 * 109.47132 * 57.86141 * 9 8 7 35 35 H 1.09001 * 109.46975 * 297.85448 * 9 8 7 36 36 H 1.09000 * 109.47235 * 54.99851 * 14 10 9 37 37 H 1.08998 * 109.47007 * 295.00131 * 14 10 9 38 38 H 0.97002 * 120.00458 * 0.02562 * 18 17 15 39 39 H 1.08999 * 108.98077 * 217.08447 * 23 8 7 40 40 H 1.09003 * 108.98003 * 335.79364 * 23 8 7 41 41 H 1.09000 * 108.91979 * 198.19144 * 24 23 8 42 42 H 1.09003 * 108.84590 * 79.58687 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3224 1.9949 -0.4895 5 6 2.2072 1.7478 1.4246 6 6 2.0184 3.2793 1.5025 7 6 3.1896 3.9906 1.0025 8 7 3.4770 3.6991 -0.4178 9 6 4.1999 4.8121 -1.0477 10 6 4.5258 4.4524 -2.4986 11 1 5.1317 3.5465 -2.5212 12 6 3.2749 4.2244 -3.2405 13 7 2.3096 4.0486 -3.8130 14 6 5.3012 5.6009 -3.1470 15 6 5.7285 5.1980 -4.5350 16 1 5.4729 4.2205 -4.9162 17 6 6.4457 6.0776 -5.3180 18 7 6.7565 7.2681 -4.8538 19 14 6.9760 5.5780 -7.0381 20 1 5.9213 5.9594 -8.0115 21 1 7.1844 4.1084 -7.0846 22 1 8.2436 6.2690 -7.3855 23 6 4.2308 2.4727 -0.5139 24 6 3.3255 1.2607 -0.8055 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.2135 1.4867 1.7522 29 1 1.4739 1.2565 2.0641 30 1 1.8453 3.5642 2.5402 31 1 1.1500 3.5606 0.9068 32 1 4.0550 3.7067 1.6013 33 1 3.0240 5.0621 1.1145 34 1 5.1254 4.9987 -0.5030 35 1 3.5786 5.7074 -1.0261 36 1 6.1825 5.8285 -2.5473 37 1 4.6634 6.4829 -3.2049 38 1 6.4815 7.5275 -3.9605 39 1 4.9635 2.5688 -1.3151 40 1 4.7560 2.3048 0.4264 41 1 3.8644 0.3479 -0.5518 42 1 3.0881 1.2464 -1.8693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374683186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:19 Heat of formation + Delta-G solvation = -47.941841 kcal Electronic energy + Delta-G solvation = -20899.192032 eV Core-core repulsion = 17878.128100 eV Total energy + Delta-G solvation = -3021.063932 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84267 -39.03239 -37.65966 -35.92598 -34.86015 -33.15572 -32.74538 -28.75621 -27.72954 -26.71015 -25.48061 -24.46373 -23.49259 -21.60362 -20.85558 -19.08250 -18.22942 -17.75439 -17.05972 -16.64546 -16.22784 -15.86823 -15.63887 -15.42657 -15.21991 -14.78058 -14.63743 -14.24009 -14.03409 -13.98968 -13.65490 -13.36420 -13.25999 -12.91111 -12.84986 -12.63591 -12.42964 -12.23943 -12.05755 -11.97026 -11.79489 -11.78092 -11.58986 -11.39562 -11.29299 -10.66141 -10.53065 -10.49164 -9.26244 -8.63795 -6.34839 1.53721 1.59807 1.77961 1.97749 2.05464 2.55481 2.80193 2.85270 3.18017 3.26745 3.77810 3.86296 4.00978 4.05136 4.18315 4.23298 4.28484 4.42014 4.42505 4.46889 4.55049 4.58458 4.66643 4.71929 4.77179 4.81556 4.87395 4.90294 5.00933 5.09066 5.10561 5.20314 5.25451 5.33086 5.39084 5.41959 5.93271 6.11979 6.19460 6.22306 6.30557 6.62952 6.82766 7.42489 8.78594 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028413 B = 0.004434 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.233697 B = 6313.356737 C = 6807.039866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.414 6.414 3 C 0.101 3.899 4 H 0.042 0.958 5 C -0.129 4.129 6 C -0.110 4.110 7 C 0.052 3.948 8 N -0.549 5.549 9 C 0.074 3.926 10 C 0.020 3.980 11 H 0.117 0.883 12 C 0.264 3.736 13 N -0.509 5.509 14 C 0.022 3.978 15 C -0.615 4.615 16 H 0.043 0.957 17 C -0.028 4.028 18 N -0.935 5.935 19 Si 1.106 2.894 20 H -0.285 1.285 21 H -0.270 1.270 22 H -0.278 1.278 23 C 0.047 3.953 24 C -0.103 4.103 25 H 0.098 0.902 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.034 0.966 37 H -0.002 1.002 38 H 0.262 0.738 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.573 -10.542 16.827 20.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.334 6.334 3 C 0.044 3.956 4 H 0.060 0.940 5 C -0.166 4.166 6 C -0.147 4.147 7 C -0.074 4.074 8 N -0.274 5.274 9 C -0.055 4.055 10 C -0.001 4.001 11 H 0.134 0.866 12 C -0.052 4.052 13 N -0.186 5.186 14 C -0.016 4.016 15 C -0.653 4.653 16 H 0.062 0.938 17 C -0.227 4.227 18 N -0.573 5.573 19 Si 0.929 3.071 20 H -0.211 1.211 21 H -0.195 1.195 22 H -0.204 1.204 23 C -0.081 4.081 24 C -0.142 4.142 25 H 0.117 0.883 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.016 0.984 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.571 -10.513 14.384 19.359 hybrid contribution -0.110 0.077 1.460 1.466 sum -7.682 -10.436 15.845 20.469 Atomic orbital electron populations 1.22876 0.80306 1.03464 1.00106 1.87846 1.20757 1.29420 1.95341 1.21898 0.94701 0.83065 0.95985 0.93961 1.21822 1.03133 0.96122 0.95566 1.20546 0.98269 0.94102 1.01819 1.21096 0.98833 1.00982 0.86509 1.61627 1.46379 1.02684 1.16701 1.22135 0.98621 0.94020 0.90716 1.19238 0.86327 1.02056 0.92495 0.86577 1.29244 0.93688 0.90910 0.91377 1.80973 1.14290 1.11320 1.12041 1.19144 0.94671 0.92500 0.95329 1.22381 1.38444 1.02871 1.01636 0.93814 1.27006 0.94356 0.93444 1.07862 1.70878 1.46055 1.20772 1.19566 0.83055 0.76710 0.76044 0.71301 1.21113 1.19497 1.20357 1.22045 0.94761 0.88959 1.02369 1.21920 0.95328 0.98315 0.98601 0.88340 0.92983 0.95006 0.90729 0.90821 0.88986 0.92843 0.92636 0.90567 0.90767 0.90223 0.94830 0.98361 0.92796 0.90726 0.91626 0.90382 0.94328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.70 113.37 1.21 1.77 16 2 O -0.41 -10.44 10.19 -148.98 -1.52 -11.96 16 3 C 0.10 2.43 2.25 30.21 0.07 2.50 16 4 H 0.04 1.19 6.96 -2.38 -0.02 1.17 16 5 C -0.13 -2.38 5.26 30.29 0.16 -2.22 16 6 C -0.11 -1.86 5.53 28.92 0.16 -1.70 16 7 C 0.05 0.96 4.96 83.94 0.42 1.37 16 8 N -0.55 -13.34 3.91 -911.79 -3.56 -16.91 16 9 C 0.07 1.99 4.26 86.30 0.37 2.36 16 10 C 0.02 0.73 1.94 -12.60 -0.02 0.70 16 11 H 0.12 3.91 5.81 -2.39 -0.01 3.89 16 12 C 0.26 11.06 13.57 89.44 1.21 12.27 16 13 N -0.51 -23.34 18.54 20.01 0.37 -22.97 16 14 C 0.02 1.01 3.74 29.85 0.11 1.12 16 15 C -0.62 -32.89 8.60 25.60 0.22 -32.67 16 16 H 0.04 2.36 7.59 -2.91 -0.02 2.33 16 17 C -0.03 -1.54 5.46 84.66 0.46 -1.07 16 18 N -0.94 -55.00 13.65 21.45 0.29 -54.70 16 19 Si 1.11 49.91 29.90 68.60 2.05 51.96 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 C 0.05 1.08 4.87 87.15 0.42 1.51 16 24 C -0.10 -2.60 5.77 31.39 0.18 -2.42 16 25 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 0.85 7.81 -2.39 -0.02 0.83 16 27 H 0.03 0.66 8.07 -2.39 -0.02 0.64 16 28 H 0.07 1.29 7.15 -2.39 -0.02 1.28 16 29 H 0.07 1.26 7.57 -2.39 -0.02 1.24 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.08 7.58 -2.39 -0.02 1.06 16 32 H 0.06 0.86 7.24 -2.39 -0.02 0.85 16 33 H 0.08 1.31 7.77 -2.39 -0.02 1.29 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 2.20 8.09 -2.39 -0.02 2.18 16 36 H 0.03 1.49 8.01 -2.39 -0.02 1.47 16 37 H 0.00 -0.10 8.01 -2.39 -0.02 -0.12 16 38 H 0.26 15.20 7.22 -92.71 -0.67 14.53 16 39 H 0.07 1.83 5.10 -2.39 -0.01 1.82 16 40 H 0.07 1.23 6.51 -2.39 -0.02 1.21 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -65.88 331.63 3.70 -62.18 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.09 Total: 8.86 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 4.97 Total: -16.46 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -2.90 Total: -94.58 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -1.52 Total: -11.96 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.05 Total: 51.96 kcal Total: -65.88 3.70 -62.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374683186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.236 kcal (2) G-P(sol) polarization free energy of solvation -65.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds