Wall clock time and date at job start Mon Mar 30 2020 00:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00368 * 2 1 4 4 H 1.09005 * 109.66745 * 30.30932 * 3 2 1 5 5 C 1.54524 * 109.57324 * 270.00368 * 3 2 1 6 6 C 1.45876 * 111.61186 * 162.92044 * 5 3 2 7 7 C 1.53979 * 112.66998 * 61.52555 * 6 5 3 8 8 N 1.44299 * 108.31236 * 278.59193 * 7 6 5 9 9 C 1.46902 * 110.99779 * 221.34888 * 8 7 6 10 10 C 1.53005 * 109.46905 * 164.20794 * 9 8 7 11 11 H 1.09000 * 109.46984 * 55.59372 * 10 9 8 12 12 C 1.47204 * 109.47136 * 295.58786 * 10 9 8 13 13 N 6.28525 * 83.83321 * 20.33705 * 2 1 3 14 14 C 1.53003 * 109.46827 * 175.58821 * 10 9 8 15 15 C 1.50696 * 109.46838 * 185.00034 * 14 10 9 16 16 H 1.08003 * 120.00219 * 0.02562 * 15 14 10 17 17 C 1.37876 * 120.00226 * 180.02562 * 15 14 10 18 18 N 1.31520 * 119.99907 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00512 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46778 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47222 * 119.99819 * 19 17 15 22 22 H 1.48502 * 109.47213 * 240.00000 * 19 17 15 23 23 C 1.47939 * 113.64416 * 95.40342 * 8 7 6 24 24 C 1.50588 * 109.53221 * 150.67737 * 3 2 1 25 25 H 1.09000 * 109.47014 * 59.99900 * 1 2 3 26 26 H 1.09002 * 109.47532 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46982 * 299.99831 * 1 2 3 28 28 H 1.09005 * 109.04295 * 42.38563 * 5 3 2 29 29 H 1.09008 * 109.03752 * 283.44612 * 5 3 2 30 30 H 1.09002 * 108.84205 * 182.35354 * 6 5 3 31 31 H 1.09007 * 108.83858 * 300.70667 * 6 5 3 32 32 H 1.09006 * 109.69239 * 38.29816 * 7 6 5 33 33 H 1.09002 * 109.69200 * 158.84372 * 7 6 5 34 34 H 1.08998 * 109.47505 * 284.20888 * 9 8 7 35 35 H 1.09004 * 109.47208 * 44.21353 * 9 8 7 36 36 H 1.08998 * 109.47015 * 304.99897 * 14 10 9 37 37 H 1.08997 * 109.46816 * 65.00358 * 14 10 9 38 38 H 0.97000 * 119.99967 * 180.02562 * 18 17 15 39 39 H 1.09005 * 108.71723 * 79.12974 * 23 8 7 40 40 H 1.09002 * 108.71037 * 197.14393 * 23 8 7 41 41 H 1.08992 * 108.82800 * 90.73710 * 24 3 2 42 42 H 1.09001 * 108.72698 * 332.42451 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3500 2.0010 0.5180 5 6 2.2208 1.7783 -1.4559 6 6 2.4270 3.2206 -1.5278 7 6 3.6808 3.6798 -0.7610 8 7 3.3438 3.7835 0.6383 9 6 3.9417 4.9848 1.2361 10 6 3.2640 5.2789 2.5760 11 1 3.3352 4.4019 3.2193 12 6 1.8472 5.6065 2.3478 13 7 0.7538 5.8594 2.1717 14 6 3.9593 6.4635 3.2499 15 6 3.3732 6.6757 4.6219 16 1 2.5841 6.0299 4.9778 17 6 3.8444 7.6942 5.4230 18 7 4.8050 8.4809 4.9894 19 14 3.1184 7.9568 7.1240 20 1 2.0589 6.9460 7.3713 21 1 4.1869 7.8148 8.1455 22 1 2.5319 9.3185 7.2071 23 6 3.6847 2.5758 1.4217 24 6 3.3454 1.2620 0.6950 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.3429 1.5147 -2.0460 29 1 3.0929 1.2732 -1.8713 30 1 2.5283 3.5101 -2.5738 31 1 1.5546 3.7223 -1.1088 32 1 4.4800 2.9504 -0.8934 33 1 4.0046 4.6513 -1.1346 34 1 5.0071 4.8192 1.3964 35 1 3.8027 5.8324 0.5649 36 1 5.0258 6.2565 3.3384 37 1 3.8120 7.3610 2.6492 38 1 5.1368 9.1972 5.5531 39 1 4.7528 2.5895 1.6387 40 1 3.1386 2.6050 2.3646 41 1 4.1203 1.0593 -0.0441 42 1 3.3348 0.4508 1.4230 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374683187.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:21 Heat of formation + Delta-G solvation = -50.040315 kcal Electronic energy + Delta-G solvation = -20739.949498 eV Core-core repulsion = 17718.794569 eV Total energy + Delta-G solvation = -3021.154928 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.64230 -38.85537 -37.52439 -35.70604 -34.84388 -33.17724 -32.78179 -28.96022 -27.79941 -26.52651 -25.54873 -24.21039 -23.39774 -21.49343 -20.76131 -18.58040 -18.20067 -17.74625 -16.84287 -16.63786 -16.32246 -16.05340 -15.78305 -15.53399 -14.77926 -14.67005 -14.50149 -14.27447 -13.97185 -13.80914 -13.56697 -13.28487 -13.05690 -12.91709 -12.85536 -12.52892 -12.49302 -12.27763 -12.23455 -11.92258 -11.86163 -11.71811 -11.53104 -11.44330 -11.28280 -11.02420 -10.54918 -10.41168 -9.04998 -8.19195 -6.27020 1.38822 1.42193 1.52333 2.09060 2.16451 2.41706 2.80218 2.95586 3.16567 3.38541 3.77477 3.89588 4.07978 4.14342 4.22062 4.36847 4.39028 4.44131 4.50143 4.57272 4.62212 4.70205 4.76843 4.80372 4.81970 4.86404 4.93027 5.02568 5.08178 5.16719 5.18859 5.29248 5.33145 5.47294 5.48060 5.63706 5.80164 6.13353 6.24802 6.31493 6.42533 6.84360 6.95521 7.41626 8.91876 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027241 B = 0.004267 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.611751 B = 6560.018269 C = 6893.566010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.093 3.907 4 H 0.051 0.949 5 C -0.126 4.126 6 C -0.110 4.110 7 C 0.062 3.938 8 N -0.566 5.566 9 C 0.078 3.922 10 C 0.020 3.980 11 H 0.112 0.888 12 C 0.268 3.732 13 N -0.516 5.516 14 C 0.038 3.962 15 C -0.537 4.537 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.947 3.053 20 H -0.271 1.271 21 H -0.272 1.272 22 H -0.285 1.285 23 C 0.062 3.938 24 C -0.112 4.112 25 H 0.044 0.956 26 H 0.100 0.900 27 H 0.036 0.964 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.002 0.998 38 H 0.264 0.736 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.180 -15.677 -12.535 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.324 6.324 3 C 0.036 3.964 4 H 0.069 0.931 5 C -0.163 4.163 6 C -0.148 4.148 7 C -0.065 4.065 8 N -0.291 5.291 9 C -0.051 4.051 10 C -0.002 4.002 11 H 0.130 0.870 12 C -0.048 4.048 13 N -0.194 5.194 14 C -0.001 4.001 15 C -0.576 4.576 16 H 0.070 0.930 17 C -0.186 4.186 18 N -0.563 5.563 19 Si 0.773 3.227 20 H -0.195 1.195 21 H -0.198 1.198 22 H -0.211 1.211 23 C -0.065 4.065 24 C -0.149 4.149 25 H 0.063 0.937 26 H 0.119 0.881 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.093 -15.295 -12.743 20.017 hybrid contribution 0.482 0.689 1.155 1.429 sum -1.611 -14.606 -11.588 18.714 Atomic orbital electron populations 1.22873 0.80376 1.03489 1.00071 1.87840 1.20636 1.28776 1.95188 1.21896 0.95150 0.83406 0.95960 0.93060 1.20949 1.02446 0.96716 0.96230 1.20402 0.98535 0.95565 1.00323 1.21859 0.96464 1.01554 0.86670 1.60655 1.62571 1.02705 1.03179 1.22150 0.97026 0.92515 0.93369 1.19207 0.81507 1.01138 0.98326 0.86988 1.29348 0.94936 0.90463 0.90063 1.80967 1.14380 1.11873 1.12164 1.18997 0.96022 0.91465 0.93631 1.21571 1.19731 1.14757 1.01494 0.93011 1.25680 0.95375 0.95751 1.01793 1.70034 1.28535 1.19293 1.38436 0.85672 0.78644 0.77789 0.80638 1.19497 1.19754 1.21131 1.22420 0.99844 0.87847 0.96425 1.21415 0.95967 0.97008 1.00551 0.93733 0.88149 0.94556 0.92175 0.90923 0.90455 0.93532 0.92236 0.90661 0.90987 0.90346 0.94605 0.97990 0.92721 0.92490 0.91700 0.90463 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.80 113.37 1.22 1.75 16 2 O -0.40 -9.36 10.25 -148.98 -1.53 -10.88 16 3 C 0.09 2.07 2.30 30.33 0.07 2.14 16 4 H 0.05 1.37 7.44 -2.38 -0.02 1.35 16 5 C -0.13 -2.41 5.00 28.93 0.14 -2.26 16 6 C -0.11 -2.17 5.37 28.74 0.15 -2.02 16 7 C 0.06 1.23 5.41 87.12 0.47 1.70 16 8 N -0.57 -13.68 3.66 -896.22 -3.28 -16.96 16 9 C 0.08 2.13 4.24 86.30 0.37 2.50 16 10 C 0.02 0.72 2.17 -12.60 -0.03 0.69 16 11 H 0.11 3.73 6.69 -2.39 -0.02 3.72 16 12 C 0.27 11.07 13.66 89.44 1.22 12.29 16 13 N -0.52 -23.33 18.54 20.01 0.37 -22.96 16 14 C 0.04 1.72 4.42 29.85 0.13 1.85 16 15 C -0.54 -28.44 8.60 25.60 0.22 -28.22 16 16 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 17 C 0.01 0.71 5.46 84.65 0.46 1.17 16 18 N -0.92 -52.73 13.29 21.45 0.28 -52.45 16 19 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 C 0.06 1.34 4.96 86.41 0.43 1.77 16 24 C -0.11 -2.22 5.02 30.12 0.15 -2.07 16 25 H 0.04 0.77 7.74 -2.39 -0.02 0.75 16 26 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.04 0.71 8.09 -2.39 -0.02 0.69 16 28 H 0.06 1.14 7.70 -2.38 -0.02 1.12 16 29 H 0.07 1.25 7.59 -2.38 -0.02 1.23 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.16 8.08 -2.38 -0.02 1.14 16 32 H 0.06 1.01 6.79 -2.38 -0.02 1.00 16 33 H 0.07 1.42 7.30 -2.39 -0.02 1.40 16 34 H 0.07 1.74 7.92 -2.39 -0.02 1.72 16 35 H 0.08 2.18 7.61 -2.38 -0.02 2.16 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.06 1.11 7.87 -2.38 -0.02 1.09 16 40 H 0.06 1.57 6.97 -2.39 -0.02 1.55 16 41 H 0.08 1.34 6.66 -2.39 -0.02 1.33 16 42 H 0.08 1.59 7.99 -2.39 -0.02 1.57 16 Total: -1.00 -63.11 334.88 3.88 -59.23 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.98 Total: 7.27 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 5.02 Total: -8.70 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -2.62 Total: -92.37 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -1.53 Total: -10.88 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -63.11 3.88 -59.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374683187.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.192 kcal (2) G-P(sol) polarization free energy of solvation -63.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds