Wall clock time and date at job start Mon Mar 30 2020 01:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47222 * 2 1 4 4 H 1.09003 * 109.46863 * 181.85236 * 3 2 1 5 5 C 1.50699 * 109.47150 * 61.84934 * 3 2 1 6 6 H 1.07994 * 120.00442 * 239.99907 * 5 3 2 7 7 C 1.37883 * 119.99814 * 60.00112 * 5 3 2 8 8 N 1.31512 * 119.99865 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99948 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47061 * 59.99993 * 9 7 5 11 11 H 1.48500 * 109.46942 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47231 * 300.00046 * 9 7 5 13 13 N 1.46891 * 109.46899 * 301.85070 * 3 2 1 14 14 C 1.46849 * 111.00018 * 181.24357 * 13 3 2 15 15 C 1.53038 * 109.52517 * 185.84236 * 14 13 3 16 16 C 1.53122 * 109.27442 * 300.81755 * 15 14 13 17 17 N 1.46901 * 109.52082 * 177.55920 * 16 15 14 18 18 C 1.48558 * 111.00310 * 180.02562 * 17 16 15 19 19 C 1.54385 * 104.70195 * 200.90380 * 18 17 16 20 20 C 1.54568 * 104.90816 * 23.87594 * 19 18 17 21 21 C 1.48561 * 111.00060 * 64.58460 * 17 16 15 22 22 C 1.53117 * 109.16014 * 57.66131 * 16 15 14 23 23 C 1.46840 * 111.00460 * 305.45464 * 13 3 2 24 24 H 1.08997 * 109.47204 * 64.74692 * 1 2 3 25 25 H 1.08998 * 109.47343 * 184.75187 * 1 2 3 26 26 H 1.09004 * 109.46738 * 304.75116 * 1 2 3 27 27 H 1.08996 * 109.47019 * 240.00117 * 2 1 3 28 28 H 1.09008 * 109.47264 * 120.00080 * 2 1 3 29 29 H 0.97007 * 119.99755 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.46132 * 65.82427 * 14 13 3 31 31 H 1.08998 * 109.46573 * 305.85485 * 14 13 3 32 32 H 1.08996 * 109.50265 * 180.88225 * 15 14 13 33 33 H 1.08997 * 109.50724 * 60.75776 * 15 14 13 34 34 H 1.08994 * 109.52772 * 297.68633 * 16 15 14 35 35 H 1.09001 * 110.40872 * 319.74203 * 18 17 16 36 36 H 1.08999 * 110.41417 * 82.06016 * 18 17 16 37 37 H 1.08998 * 110.32154 * 142.80923 * 19 18 17 38 38 H 1.08996 * 110.32050 * 265.01179 * 19 18 17 39 39 H 1.08997 * 110.29992 * 241.08331 * 20 19 18 40 40 H 1.08999 * 110.31225 * 118.89795 * 20 19 18 41 41 H 1.09003 * 110.41347 * 277.81609 * 21 17 16 42 42 H 1.09002 * 110.41013 * 40.14473 * 21 17 16 43 43 H 1.09004 * 109.50915 * 62.28083 * 22 16 15 44 44 H 1.09005 * 109.50610 * 182.40461 * 22 16 15 45 45 H 1.09005 * 109.46262 * 294.17816 * 23 13 3 46 46 H 1.09009 * 109.46240 * 54.15446 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1296 1.4427 -0.0332 5 6 1.5755 2.1396 1.2527 6 1 0.9521 3.0186 1.1821 7 6 1.9465 1.6551 2.4892 8 7 2.7053 0.5844 2.5752 9 14 1.3713 2.5195 4.0420 10 1 -0.1130 2.5199 4.0875 11 1 1.9033 1.8068 5.2312 12 1 1.8669 3.9194 4.0418 13 7 1.5142 2.1478 -1.1764 14 6 2.0077 3.5300 -1.2255 15 6 1.3283 4.2750 -2.3767 16 6 1.6344 3.5570 -3.6940 17 7 0.9370 4.2338 -4.7956 18 6 1.2113 3.5622 -6.0920 19 6 0.8983 4.6312 -7.1610 20 6 1.0577 5.9835 -6.4297 21 6 1.4521 5.6146 -4.9833 22 6 1.1539 2.1062 -3.5990 23 6 1.8383 1.4241 -2.4123 24 1 -0.3633 0.4384 -0.9294 25 1 -0.3634 -1.0241 0.0851 26 1 -0.3633 0.5858 0.8444 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.9667 0.2438 3.4451 30 1 3.0863 3.5251 -1.3824 31 1 1.7800 4.0306 -0.2845 32 1 1.7064 5.2963 -2.4226 33 1 0.2508 4.2922 -2.2135 34 1 2.7086 3.5746 -3.8776 35 1 2.2572 3.2611 -6.1503 36 1 0.5600 2.6972 -6.2173 37 1 1.6062 4.5594 -7.9867 38 1 -0.1224 4.5148 -7.5253 39 1 0.1150 6.5307 -6.4369 40 1 1.8440 6.5762 -6.8972 41 1 0.9806 6.2958 -4.2749 42 1 2.5355 5.6354 -4.8659 43 1 0.0735 2.0893 -3.4549 44 1 1.4073 1.5779 -4.5182 45 1 2.9178 1.4290 -2.5637 46 1 1.4874 0.3950 -2.3333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384483724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:21 Heat of formation + Delta-G solvation = -0.052065 kcal Electronic energy + Delta-G solvation = -21684.982914 eV Core-core repulsion = 18801.828733 eV Total energy + Delta-G solvation = -2883.154181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.51792 -37.69722 -34.67721 -32.30515 -31.12757 -30.36871 -28.90610 -28.63172 -26.13274 -23.79288 -22.85055 -22.26535 -20.92828 -20.38275 -19.49135 -18.74717 -16.29112 -16.05964 -15.88906 -15.13093 -14.30674 -14.17284 -14.07590 -13.69774 -13.48134 -13.09341 -12.97188 -12.62742 -12.32441 -11.96148 -11.85658 -11.66702 -11.53318 -11.39484 -11.09856 -10.93060 -10.85316 -10.69465 -10.62889 -10.56982 -10.43093 -10.07885 -9.85857 -9.76020 -9.55856 -9.31908 -8.74114 -8.40058 -8.35263 -7.06784 -5.96717 -4.00042 3.34264 3.38799 3.41835 4.01589 4.43777 4.58771 4.63775 4.86912 4.99072 5.20142 5.21589 5.30266 5.36080 5.43634 5.59929 5.61840 5.66098 5.71309 5.81839 5.92607 5.94436 5.98201 6.04085 6.08799 6.12990 6.24217 6.31760 6.45693 6.56331 6.62324 6.63723 6.75547 6.79936 6.87480 6.94055 7.16390 7.22757 7.37316 7.47228 7.71191 7.81067 7.87905 8.27014 8.39676 8.66776 9.05523 9.63767 11.09615 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.032626 B = 0.004581 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.017454 B = 6110.397556 C = 6647.152743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C 0.217 3.783 4 H -0.005 1.005 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.526 5.526 14 C 0.067 3.933 15 C -0.104 4.104 16 C 0.077 3.923 17 N -0.505 5.505 18 C 0.032 3.968 19 C -0.124 4.124 20 C -0.124 4.124 21 C 0.032 3.968 22 C -0.103 4.103 23 C 0.053 3.947 24 H 0.040 0.960 25 H 0.015 0.985 26 H 0.059 0.941 27 H 0.013 0.987 28 H 0.092 0.908 29 H 0.260 0.740 30 H 0.014 0.986 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.014 0.986 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 6.326 -15.719 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.111 3.889 4 H 0.012 0.988 5 C -0.533 4.533 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.251 5.251 14 C -0.062 4.062 15 C -0.143 4.143 16 C -0.031 4.031 17 N -0.229 5.229 18 C -0.096 4.096 19 C -0.162 4.162 20 C -0.162 4.162 21 C -0.096 4.096 22 C -0.142 4.142 23 C -0.076 4.076 24 H 0.059 0.941 25 H 0.034 0.966 26 H 0.078 0.922 27 H 0.032 0.968 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.071 0.929 45 H 0.032 0.968 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.763 6.208 -15.379 16.813 hybrid contribution 1.631 0.332 0.638 1.783 sum -1.132 6.539 -14.741 16.166 Atomic orbital electron populations 1.21473 0.97228 0.97580 1.01544 1.21603 0.95201 0.98254 1.00068 1.19245 0.92356 0.90761 0.86513 0.98764 1.21027 1.30801 1.11842 0.89626 0.92039 1.24899 0.95247 0.95096 0.98894 1.69870 1.36500 1.22635 1.24313 0.86643 0.79113 0.79551 0.82586 1.20227 1.21475 1.20444 1.62024 1.59932 1.01135 1.02034 1.21909 0.95094 0.90977 0.98264 1.21643 1.02372 0.97309 0.92942 1.21910 0.94758 0.94999 0.91425 1.65453 1.53017 1.01639 1.02819 1.23080 0.99381 0.97642 0.89530 1.22344 1.01885 0.94565 0.97445 1.22343 1.01604 0.97250 0.95028 1.23092 0.97888 0.91848 0.96805 1.21619 1.01985 0.93306 0.97244 1.22071 0.96321 0.98660 0.90587 0.94072 0.96630 0.92170 0.96814 0.88991 0.93026 0.96815 0.89541 0.92878 0.90567 0.94866 0.94228 0.90152 0.91716 0.91150 0.91151 0.91728 0.90095 0.94171 0.90527 0.92917 0.96763 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.43 37.16 0.35 -2.33 16 2 C -0.11 -2.70 4.95 -26.73 -0.13 -2.83 16 3 C 0.22 5.39 1.76 -68.87 -0.12 5.27 16 4 H -0.01 -0.14 8.14 -51.93 -0.42 -0.57 16 5 C -0.49 -13.20 6.61 -34.44 -0.23 -13.43 16 6 H 0.06 1.65 6.79 -52.49 -0.36 1.30 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.24 11.31 55.43 0.63 -24.61 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.53 -11.14 3.79 -228.08 -0.86 -12.01 16 14 C 0.07 1.31 5.26 -3.83 -0.02 1.29 16 15 C -0.10 -1.70 5.28 -26.65 -0.14 -1.84 16 16 C 0.08 1.16 1.77 -67.59 -0.12 1.04 16 17 N -0.51 -6.69 5.20 -221.86 -1.15 -7.84 16 18 C 0.03 0.36 5.36 -2.18 -0.01 0.35 16 19 C -0.12 -1.15 7.02 -25.18 -0.18 -1.33 16 20 C -0.12 -1.16 7.01 -25.18 -0.18 -1.34 16 21 C 0.03 0.36 5.54 -2.17 -0.01 0.35 16 22 C -0.10 -1.61 5.18 -26.65 -0.14 -1.75 16 23 C 0.05 0.98 4.87 -3.84 -0.02 0.96 16 24 H 0.04 0.86 7.28 -51.93 -0.38 0.48 16 25 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 1.45 7.12 -51.93 -0.37 1.08 16 27 H 0.01 0.30 6.31 -51.93 -0.33 -0.03 16 28 H 0.09 2.46 6.02 -51.92 -0.31 2.15 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 1.84 6.38 -51.93 -0.33 1.50 16 32 H 0.05 0.78 7.20 -51.93 -0.37 0.40 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.03 0.52 7.98 -51.93 -0.41 0.11 16 35 H 0.04 0.45 7.97 -51.93 -0.41 0.04 16 36 H 0.08 0.90 7.72 -51.93 -0.40 0.50 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.93 7.76 -51.93 -0.40 0.52 16 42 H 0.04 0.47 7.90 -51.93 -0.41 0.06 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.05 0.73 7.09 -51.93 -0.37 0.36 16 45 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.08 1.46 5.64 -51.92 -0.29 1.16 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -27.40 335.41 -10.91 -38.31 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -8.52 Total: -1.04 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -1.04 Total: -14.06 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -1.39 Total: -44.46 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.40 -10.91 -38.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384483724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.257 kcal (2) G-P(sol) polarization free energy of solvation -27.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds