Wall clock time and date at job start Mon Mar 30 2020 01:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47222 * 2 1 4 4 H 1.09003 * 109.46863 * 181.85236 * 3 2 1 5 5 C 1.50699 * 109.47150 * 61.84934 * 3 2 1 6 6 H 1.07994 * 120.00442 * 239.99907 * 5 3 2 7 7 C 1.37883 * 119.99814 * 60.00112 * 5 3 2 8 8 N 1.31512 * 119.99865 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99948 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47061 * 59.99993 * 9 7 5 11 11 H 1.48500 * 109.46942 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47231 * 300.00046 * 9 7 5 13 13 N 1.46891 * 109.46899 * 301.85070 * 3 2 1 14 14 C 1.46849 * 111.00018 * 181.24357 * 13 3 2 15 15 C 1.53038 * 109.52517 * 185.84236 * 14 13 3 16 16 C 1.53122 * 109.27442 * 300.81755 * 15 14 13 17 17 N 1.46901 * 109.52082 * 177.55920 * 16 15 14 18 18 C 1.48558 * 111.00310 * 180.02562 * 17 16 15 19 19 C 1.54385 * 104.70195 * 200.90380 * 18 17 16 20 20 C 1.54568 * 104.90816 * 23.87594 * 19 18 17 21 21 C 1.48561 * 111.00060 * 64.58460 * 17 16 15 22 22 C 1.53117 * 109.16014 * 57.66131 * 16 15 14 23 23 C 1.46840 * 111.00460 * 305.45464 * 13 3 2 24 24 H 1.08997 * 109.47204 * 64.74692 * 1 2 3 25 25 H 1.08998 * 109.47343 * 184.75187 * 1 2 3 26 26 H 1.09004 * 109.46738 * 304.75116 * 1 2 3 27 27 H 1.08996 * 109.47019 * 240.00117 * 2 1 3 28 28 H 1.09008 * 109.47264 * 120.00080 * 2 1 3 29 29 H 0.97007 * 119.99755 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.46132 * 65.82427 * 14 13 3 31 31 H 1.08998 * 109.46573 * 305.85485 * 14 13 3 32 32 H 1.08996 * 109.50265 * 180.88225 * 15 14 13 33 33 H 1.08997 * 109.50724 * 60.75776 * 15 14 13 34 34 H 1.08994 * 109.52772 * 297.68633 * 16 15 14 35 35 H 1.09001 * 110.40872 * 319.74203 * 18 17 16 36 36 H 1.08999 * 110.41417 * 82.06016 * 18 17 16 37 37 H 1.08998 * 110.32154 * 142.80923 * 19 18 17 38 38 H 1.08996 * 110.32050 * 265.01179 * 19 18 17 39 39 H 1.08997 * 110.29992 * 241.08331 * 20 19 18 40 40 H 1.08999 * 110.31225 * 118.89795 * 20 19 18 41 41 H 1.09003 * 110.41347 * 277.81609 * 21 17 16 42 42 H 1.09002 * 110.41013 * 40.14473 * 21 17 16 43 43 H 1.09004 * 109.50915 * 62.28083 * 22 16 15 44 44 H 1.09005 * 109.50610 * 182.40461 * 22 16 15 45 45 H 1.09005 * 109.46262 * 294.17816 * 23 13 3 46 46 H 1.09009 * 109.46240 * 54.15446 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1296 1.4427 -0.0332 5 6 1.5755 2.1396 1.2527 6 1 0.9521 3.0186 1.1821 7 6 1.9465 1.6551 2.4892 8 7 2.7053 0.5844 2.5752 9 14 1.3713 2.5195 4.0420 10 1 -0.1130 2.5199 4.0875 11 1 1.9033 1.8068 5.2312 12 1 1.8669 3.9194 4.0418 13 7 1.5142 2.1478 -1.1764 14 6 2.0077 3.5300 -1.2255 15 6 1.3283 4.2750 -2.3767 16 6 1.6344 3.5570 -3.6940 17 7 0.9370 4.2338 -4.7956 18 6 1.2113 3.5622 -6.0920 19 6 0.8983 4.6312 -7.1610 20 6 1.0577 5.9835 -6.4297 21 6 1.4521 5.6146 -4.9833 22 6 1.1539 2.1062 -3.5990 23 6 1.8383 1.4241 -2.4123 24 1 -0.3633 0.4384 -0.9294 25 1 -0.3634 -1.0241 0.0851 26 1 -0.3633 0.5858 0.8444 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.9667 0.2438 3.4451 30 1 3.0863 3.5251 -1.3824 31 1 1.7800 4.0306 -0.2845 32 1 1.7064 5.2963 -2.4226 33 1 0.2508 4.2922 -2.2135 34 1 2.7086 3.5746 -3.8776 35 1 2.2572 3.2611 -6.1503 36 1 0.5600 2.6972 -6.2173 37 1 1.6062 4.5594 -7.9867 38 1 -0.1224 4.5148 -7.5253 39 1 0.1150 6.5307 -6.4369 40 1 1.8440 6.5762 -6.8972 41 1 0.9806 6.2958 -4.2749 42 1 2.5355 5.6354 -4.8659 43 1 0.0735 2.0893 -3.4549 44 1 1.4073 1.5779 -4.5182 45 1 2.9178 1.4290 -2.5637 46 1 1.4874 0.3950 -2.3333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384483724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:21 Heat of formation + Delta-G solvation = -16.175455 kcal Electronic energy + Delta-G solvation = -21685.682076 eV Core-core repulsion = 18801.828733 eV Total energy + Delta-G solvation = -2883.853343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.73081 -39.08539 -36.27684 -34.00316 -32.76620 -31.81052 -30.19532 -29.61474 -28.01064 -25.53715 -24.26121 -23.73484 -22.11472 -21.28721 -20.98564 -20.40847 -18.11178 -17.58517 -16.82878 -16.67042 -15.95381 -15.68722 -15.29640 -15.15636 -15.09353 -14.51327 -14.29788 -13.97567 -13.77530 -13.48232 -13.24491 -13.00790 -12.92256 -12.76753 -12.61177 -12.41093 -12.22196 -12.10570 -12.05307 -11.97149 -11.84810 -11.60040 -11.36070 -11.34000 -11.27185 -11.04172 -10.68364 -10.40783 -9.41441 -8.85964 -8.06226 -6.16017 1.43310 1.44561 1.51769 2.44525 2.99566 3.21246 3.37996 3.70685 3.76815 3.94410 4.08665 4.13752 4.31187 4.36215 4.39313 4.47460 4.57611 4.65341 4.66851 4.67511 4.73093 4.80006 4.85958 4.89693 4.93429 4.94724 5.02431 5.06053 5.12328 5.17612 5.23862 5.24567 5.30144 5.33974 5.37798 5.49746 5.55011 5.75731 5.80158 5.91000 5.98839 6.13306 6.34912 6.47202 6.80714 6.96833 7.51559 8.99064 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.032626 B = 0.004581 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.017454 B = 6110.397556 C = 6647.152743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.108 4.108 3 C 0.223 3.777 4 H -0.048 1.048 5 C -0.502 4.502 6 H 0.055 0.945 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.528 5.528 14 C 0.068 3.932 15 C -0.091 4.091 16 C 0.085 3.915 17 N -0.515 5.515 18 C 0.027 3.973 19 C -0.120 4.120 20 C -0.120 4.120 21 C 0.027 3.973 22 C -0.092 4.092 23 C 0.053 3.947 24 H 0.052 0.948 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.029 0.971 28 H 0.062 0.938 29 H 0.259 0.741 30 H 0.004 0.996 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.007 0.993 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 7.210 -17.518 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C 0.116 3.884 4 H -0.031 1.031 5 C -0.541 4.541 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.253 5.253 14 C -0.061 4.061 15 C -0.130 4.130 16 C -0.024 4.024 17 N -0.239 5.239 18 C -0.100 4.100 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.101 4.101 22 C -0.130 4.130 23 C -0.076 4.076 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.025 0.975 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.766 7.105 -17.201 18.988 hybrid contribution 1.979 0.061 1.153 2.292 sum -1.786 7.166 -16.048 17.666 Atomic orbital electron populations 1.21318 0.95571 0.98571 1.01004 1.21474 0.96524 0.97355 0.99330 1.19041 0.89817 0.91820 0.87745 1.03065 1.21221 1.30477 1.11682 0.90687 0.92649 1.25609 0.95387 0.95712 1.01704 1.70008 1.37468 1.23793 1.24796 0.85705 0.78761 0.78625 0.79116 1.19703 1.21206 1.19909 1.61999 1.59535 1.01741 1.02037 1.21887 0.94868 0.90437 0.98896 1.21490 1.01304 0.97836 0.92325 1.21723 0.94580 0.94551 0.91548 1.65425 1.52823 1.02527 1.03112 1.23173 0.99396 0.98352 0.89110 1.22348 1.02725 0.93549 0.97165 1.22342 1.02382 0.97574 0.93490 1.23177 0.97704 0.90820 0.98412 1.21508 1.01079 0.93794 0.96611 1.22131 0.96270 0.98713 0.90474 0.92938 0.94507 0.94531 0.95279 0.91946 0.93144 0.97815 0.91693 0.91186 0.91351 0.95414 0.94331 0.89975 0.90117 0.90584 0.90665 0.90201 0.90306 0.94423 0.91098 0.90595 0.97482 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 9.43 71.98 0.68 -4.01 16 2 C -0.11 -5.26 4.95 30.60 0.15 -5.11 16 3 C 0.22 11.40 1.76 44.17 0.08 11.48 16 4 H -0.05 -2.81 8.14 -2.39 -0.02 -2.83 16 5 C -0.50 -27.48 6.61 25.60 0.17 -27.31 16 6 H 0.06 3.04 6.79 -2.91 -0.02 3.02 16 7 C 0.01 0.79 5.30 84.66 0.45 1.23 16 8 N -0.92 -53.29 11.31 21.45 0.24 -53.04 16 9 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 13 N -0.53 -22.66 3.79 -875.51 -3.32 -25.98 16 14 C 0.07 2.72 5.26 86.33 0.45 3.17 16 15 C -0.09 -2.90 5.28 30.65 0.16 -2.74 16 16 C 0.08 2.42 1.77 45.00 0.08 2.50 16 17 N -0.51 -12.51 5.20 -855.84 -4.45 -16.96 16 18 C 0.03 0.55 5.36 86.45 0.46 1.01 16 19 C -0.12 -1.84 7.02 31.60 0.22 -1.62 16 20 C -0.12 -1.88 7.01 31.60 0.22 -1.66 16 21 C 0.03 0.55 5.54 86.46 0.48 1.03 16 22 C -0.09 -2.72 5.18 30.65 0.16 -2.56 16 23 C 0.05 1.93 4.87 86.33 0.42 2.35 16 24 H 0.05 2.14 7.28 -2.39 -0.02 2.12 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.04 1.74 7.12 -2.39 -0.02 1.73 16 27 H 0.03 1.28 6.31 -2.39 -0.02 1.27 16 28 H 0.06 3.42 6.02 -2.38 -0.01 3.40 16 29 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 30 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.06 2.84 6.38 -2.39 -0.02 2.83 16 32 H 0.07 1.98 7.20 -2.39 -0.02 1.96 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.03 0.83 7.98 -2.39 -0.02 0.81 16 35 H 0.04 0.78 7.97 -2.39 -0.02 0.76 16 36 H 0.08 1.60 7.72 -2.39 -0.02 1.59 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.65 7.76 -2.39 -0.02 1.63 16 42 H 0.04 0.80 7.90 -2.39 -0.02 0.78 16 43 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.08 1.91 7.09 -2.38 -0.02 1.90 16 45 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 46 H 0.08 2.78 5.64 -2.38 -0.01 2.77 16 Total: -1.00 -59.55 335.41 -0.39 -59.94 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.92 Total: 12.24 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 4.19 Total: -22.23 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -7.52 Total: -95.98 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -59.55 -0.39 -59.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384483724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.765 kcal (2) G-P(sol) polarization free energy of solvation -59.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds