Wall clock time and date at job start Mon Mar 30 2020 01:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46848 * 2 1 4 4 H 1.08996 * 109.47492 * 55.00058 * 3 2 1 5 5 C 1.50701 * 109.47214 * 175.00296 * 3 2 1 6 6 H 1.07998 * 120.00018 * 119.99730 * 5 3 2 7 7 C 1.37878 * 119.99884 * 300.00424 * 5 3 2 8 8 N 1.31512 * 119.99939 * 179.97438 * 7 5 3 9 9 Si 1.86807 * 119.99941 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.46765 * 90.00409 * 9 7 5 11 11 H 1.48502 * 109.46797 * 210.00487 * 9 7 5 12 12 H 1.48494 * 109.47005 * 330.00405 * 9 7 5 13 13 N 1.46902 * 109.47102 * 295.00197 * 3 2 1 14 14 C 1.46847 * 110.99810 * 175.00050 * 13 3 2 15 15 C 1.53042 * 109.51502 * 185.84286 * 14 13 3 16 16 C 1.53116 * 109.27942 * 300.80690 * 15 14 13 17 17 N 1.46900 * 109.52398 * 177.56903 * 16 15 14 18 18 C 1.48530 * 110.99829 * 59.34943 * 17 16 15 19 19 C 1.54938 * 103.22396 * 159.72459 * 18 17 16 20 20 C 1.54597 * 102.92181 * 322.58421 * 19 18 17 21 21 C 1.47893 * 111.00200 * 176.75003 * 17 16 15 22 22 C 1.53123 * 109.15199 * 57.66816 * 16 15 14 23 23 C 1.46846 * 111.00125 * 299.20840 * 13 3 2 24 24 H 1.09001 * 109.46898 * 299.99803 * 1 2 3 25 25 H 1.08993 * 109.47487 * 59.99797 * 1 2 3 26 26 H 1.08999 * 109.47211 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46898 * 240.00196 * 2 1 3 28 28 H 1.08993 * 109.47487 * 120.00203 * 2 1 3 29 29 H 0.97006 * 119.99923 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.46410 * 305.85658 * 14 13 3 31 31 H 1.09003 * 109.46369 * 65.83306 * 14 13 3 32 32 H 1.09001 * 109.50130 * 60.75995 * 15 14 13 33 33 H 1.09004 * 109.50441 * 180.87351 * 15 14 13 34 34 H 1.09004 * 109.58417 * 297.73427 * 16 15 14 35 35 H 1.09004 * 110.67027 * 278.15703 * 18 17 16 36 36 H 1.08993 * 110.66863 * 41.28659 * 18 17 16 37 37 H 1.09002 * 110.72434 * 204.22827 * 19 18 17 38 38 H 1.09001 * 110.72580 * 80.94941 * 19 18 17 39 39 H 1.08995 * 110.30976 * 263.03983 * 20 19 18 40 40 H 1.09000 * 110.30545 * 140.87292 * 20 19 18 41 41 H 1.08998 * 109.91904 * 333.50610 * 21 17 16 42 42 H 1.08995 * 109.92289 * 94.60464 * 21 17 16 43 43 H 1.09003 * 109.50211 * 182.39998 * 22 16 15 44 44 H 1.09004 * 109.49857 * 62.28096 * 22 16 15 45 45 H 1.08997 * 109.46170 * 294.17760 * 23 13 3 46 46 H 1.09003 * 109.45927 * 54.16077 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 5.4540 0.8796 1.3356 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2359 3.8754 12 1 1.7882 0.8091 2.6394 13 7 1.6512 2.0993 -1.2552 14 6 2.0205 3.5205 -1.2418 15 6 1.4731 4.2028 -2.4975 16 6 2.0523 3.5177 -3.7384 17 7 1.4855 4.1306 -4.9471 18 6 1.7936 5.5825 -5.0023 19 6 1.6114 5.9268 -6.5019 20 6 2.1647 4.6714 -7.2145 21 6 2.0814 3.5452 -6.1675 22 6 1.6946 2.0293 -3.7034 23 6 2.2354 1.4098 -2.4127 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.8771 0.4817 2.1126 30 1 1.5990 3.9969 -0.3566 31 1 3.1063 3.6135 -1.2220 32 1 0.3862 4.1221 -2.5111 33 1 1.7605 5.2543 -2.4950 34 1 3.1363 3.6317 -3.7462 35 1 1.0917 6.1484 -4.3896 36 1 2.8197 5.7703 -4.6863 37 1 2.1929 6.8094 -6.7685 38 1 0.5575 6.0720 -6.7391 39 1 3.1998 4.8325 -7.5154 40 1 1.5513 4.4276 -8.0819 41 1 3.0801 3.1673 -5.9486 42 1 1.4514 2.7363 -6.5373 43 1 2.1403 1.5276 -4.5624 44 1 0.6111 1.9146 -3.7360 45 1 3.3202 1.5127 -2.3873 46 1 1.9698 0.3532 -2.3782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384483879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:24 Heat of formation + Delta-G solvation = 4.328315 kcal Electronic energy + Delta-G solvation = -21798.429110 eV Core-core repulsion = 18915.464877 eV Total energy + Delta-G solvation = -2882.964233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.54166 -37.82853 -34.76109 -32.19509 -31.67256 -30.47091 -29.07405 -28.66806 -26.68194 -23.44471 -22.88428 -22.18966 -21.04346 -20.40318 -19.64708 -18.99816 -16.65431 -16.27231 -15.85208 -15.34222 -14.32663 -14.21129 -13.96330 -13.78015 -13.52009 -13.25089 -12.94692 -12.59334 -12.51227 -12.22749 -12.04042 -11.74839 -11.54481 -11.52428 -11.34281 -11.08748 -10.98710 -10.78157 -10.67651 -10.63784 -10.49624 -10.17463 -9.93280 -9.81606 -9.53774 -9.41490 -9.18882 -8.55954 -8.30321 -7.11044 -6.11626 -4.11952 3.26119 3.37246 3.39645 4.04336 4.37863 4.62582 4.64492 4.87886 4.93783 5.18909 5.24304 5.26622 5.31189 5.45836 5.65344 5.66254 5.70599 5.75300 5.85461 5.94055 5.96270 5.98449 6.05590 6.08816 6.10248 6.13321 6.16918 6.24122 6.30758 6.45187 6.50211 6.56937 6.71389 6.77898 6.83678 6.89338 6.95803 7.03180 7.12759 7.27470 7.28320 7.58744 8.14059 8.21055 8.46025 8.90664 9.52372 11.01247 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.031985 B = 0.004820 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.197539 B = 5807.978243 C = 6084.500651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C 0.180 3.820 4 H 0.038 0.962 5 C -0.543 4.543 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.263 1.263 13 N -0.524 5.524 14 C 0.064 3.936 15 C -0.105 4.105 16 C 0.079 3.921 17 N -0.513 5.513 18 C 0.034 3.966 19 C -0.123 4.123 20 C -0.131 4.131 21 C 0.036 3.964 22 C -0.104 4.104 23 C 0.060 3.940 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.032 0.968 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.263 0.737 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.037 0.963 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.146 6.328 -12.822 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.056 0.944 5 C -0.581 4.581 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.188 1.188 13 N -0.248 5.248 14 C -0.065 4.065 15 C -0.143 4.143 16 C -0.029 4.029 17 N -0.237 5.237 18 C -0.094 4.094 19 C -0.161 4.161 20 C -0.169 4.169 21 C -0.092 4.092 22 C -0.142 4.142 23 C -0.069 4.069 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.059 0.941 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.064 6.152 -12.727 16.792 hybrid contribution 1.567 -0.396 0.917 1.858 sum -7.497 5.756 -11.810 15.127 Atomic orbital electron populations 1.21734 0.97334 0.99306 1.01711 1.21952 0.94089 0.99364 1.00599 1.19708 0.94433 0.90501 0.88091 0.94396 1.21628 0.90700 1.38815 1.06995 0.90738 1.24986 0.94707 0.95345 0.97870 1.69920 1.08865 1.45205 1.29732 0.86850 0.80731 0.79833 0.80812 1.20558 1.22671 1.18829 1.62319 1.57938 1.01322 1.03177 1.21842 0.98791 0.89712 0.96150 1.21647 1.01493 0.97708 0.93429 1.21896 0.95997 0.95410 0.89604 1.64834 1.54766 1.02487 1.01632 1.23206 0.99594 0.90072 0.96504 1.22476 1.01512 0.97253 0.94903 1.22401 1.00957 0.95212 0.98372 1.22824 0.98219 0.97489 0.90715 1.21642 1.01948 0.93268 0.97386 1.21940 0.97635 0.98097 0.89259 0.93977 0.91863 0.94864 0.92220 0.93598 0.92713 0.91620 0.94194 0.90931 0.92723 0.94491 0.90057 0.93940 0.91420 0.90900 0.91804 0.91264 0.93879 0.90527 0.92830 0.91003 0.94137 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.80 37.16 0.36 -2.26 16 2 C -0.12 -2.64 4.72 -26.73 -0.13 -2.77 16 3 C 0.18 4.17 1.34 -68.86 -0.09 4.08 16 4 H 0.04 0.93 7.14 -51.93 -0.37 0.56 16 5 C -0.54 -14.73 7.77 -34.44 -0.27 -14.99 16 6 H 0.07 2.22 6.08 -52.49 -0.32 1.90 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 9 Si 0.89 21.88 24.41 -169.99 -4.15 17.73 16 10 H -0.28 -6.73 6.83 56.52 0.39 -6.34 16 11 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 13 N -0.52 -10.53 4.10 -228.08 -0.93 -11.46 16 14 C 0.06 1.22 5.12 -3.83 -0.02 1.20 16 15 C -0.10 -1.63 5.15 -26.65 -0.14 -1.77 16 16 C 0.08 1.21 1.70 -67.59 -0.11 1.09 16 17 N -0.51 -6.84 5.11 -222.37 -1.14 -7.97 16 18 C 0.03 0.40 5.40 -1.90 -0.01 0.39 16 19 C -0.12 -1.17 7.06 -24.87 -0.18 -1.35 16 20 C -0.13 -1.26 6.93 -25.37 -0.18 -1.44 16 21 C 0.04 0.42 5.54 -2.76 -0.02 0.40 16 22 C -0.10 -1.65 5.29 -26.65 -0.14 -1.79 16 23 C 0.06 1.13 4.80 -3.84 -0.02 1.12 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.12 7.75 -51.93 -0.40 0.72 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.27 6.05 -51.93 -0.31 0.95 16 28 H 0.05 1.06 3.22 -51.93 -0.17 0.89 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 31 H 0.04 0.86 6.96 -51.93 -0.36 0.49 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.78 7.06 -51.93 -0.37 0.41 16 34 H 0.04 0.62 7.99 -51.93 -0.41 0.21 16 35 H 0.08 0.92 7.72 -51.93 -0.40 0.52 16 36 H 0.04 0.51 8.01 -51.93 -0.42 0.10 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.04 0.54 7.64 -51.93 -0.40 0.14 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.78 7.36 -51.93 -0.38 0.40 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.04 0.88 6.62 -51.93 -0.34 0.54 16 46 H 0.07 1.37 5.93 -51.93 -0.31 1.06 16 LS Contribution 329.31 15.07 4.96 4.96 Total: -1.00 -28.71 329.31 -9.88 -38.60 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.37 Total: 0.70 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -1.03 Total: -16.11 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -1.30 Total: -45.88 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.15 Total: 17.73 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.71 -9.88 -38.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384483879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.926 kcal (2) G-P(sol) polarization free energy of solvation -28.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds