Wall clock time and date at job start Mon Mar 30 2020 01:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46848 * 2 1 4 4 H 1.08996 * 109.47492 * 55.00058 * 3 2 1 5 5 C 1.50701 * 109.47214 * 175.00296 * 3 2 1 6 6 H 1.07998 * 120.00018 * 119.99730 * 5 3 2 7 7 C 1.37878 * 119.99884 * 300.00424 * 5 3 2 8 8 N 1.31512 * 119.99939 * 179.97438 * 7 5 3 9 9 Si 1.86807 * 119.99941 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.46765 * 90.00409 * 9 7 5 11 11 H 1.48502 * 109.46797 * 210.00487 * 9 7 5 12 12 H 1.48494 * 109.47005 * 330.00405 * 9 7 5 13 13 N 1.46902 * 109.47102 * 295.00197 * 3 2 1 14 14 C 1.46847 * 110.99810 * 175.00050 * 13 3 2 15 15 C 1.53042 * 109.51502 * 185.84286 * 14 13 3 16 16 C 1.53116 * 109.27942 * 300.80690 * 15 14 13 17 17 N 1.46900 * 109.52398 * 177.56903 * 16 15 14 18 18 C 1.48530 * 110.99829 * 59.34943 * 17 16 15 19 19 C 1.54938 * 103.22396 * 159.72459 * 18 17 16 20 20 C 1.54597 * 102.92181 * 322.58421 * 19 18 17 21 21 C 1.47893 * 111.00200 * 176.75003 * 17 16 15 22 22 C 1.53123 * 109.15199 * 57.66816 * 16 15 14 23 23 C 1.46846 * 111.00125 * 299.20840 * 13 3 2 24 24 H 1.09001 * 109.46898 * 299.99803 * 1 2 3 25 25 H 1.08993 * 109.47487 * 59.99797 * 1 2 3 26 26 H 1.08999 * 109.47211 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46898 * 240.00196 * 2 1 3 28 28 H 1.08993 * 109.47487 * 120.00203 * 2 1 3 29 29 H 0.97006 * 119.99923 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.46410 * 305.85658 * 14 13 3 31 31 H 1.09003 * 109.46369 * 65.83306 * 14 13 3 32 32 H 1.09001 * 109.50130 * 60.75995 * 15 14 13 33 33 H 1.09004 * 109.50441 * 180.87351 * 15 14 13 34 34 H 1.09004 * 109.58417 * 297.73427 * 16 15 14 35 35 H 1.09004 * 110.67027 * 278.15703 * 18 17 16 36 36 H 1.08993 * 110.66863 * 41.28659 * 18 17 16 37 37 H 1.09002 * 110.72434 * 204.22827 * 19 18 17 38 38 H 1.09001 * 110.72580 * 80.94941 * 19 18 17 39 39 H 1.08995 * 110.30976 * 263.03983 * 20 19 18 40 40 H 1.09000 * 110.30545 * 140.87292 * 20 19 18 41 41 H 1.08998 * 109.91904 * 333.50610 * 21 17 16 42 42 H 1.08995 * 109.92289 * 94.60464 * 21 17 16 43 43 H 1.09003 * 109.50211 * 182.39998 * 22 16 15 44 44 H 1.09004 * 109.49857 * 62.28096 * 22 16 15 45 45 H 1.08997 * 109.46170 * 294.17760 * 23 13 3 46 46 H 1.09003 * 109.45927 * 54.16077 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 5.4540 0.8796 1.3356 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2359 3.8754 12 1 1.7882 0.8091 2.6394 13 7 1.6512 2.0993 -1.2552 14 6 2.0205 3.5205 -1.2418 15 6 1.4731 4.2028 -2.4975 16 6 2.0523 3.5177 -3.7384 17 7 1.4855 4.1306 -4.9471 18 6 1.7936 5.5825 -5.0023 19 6 1.6114 5.9268 -6.5019 20 6 2.1647 4.6714 -7.2145 21 6 2.0814 3.5452 -6.1675 22 6 1.6946 2.0293 -3.7034 23 6 2.2354 1.4098 -2.4127 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.8771 0.4817 2.1126 30 1 1.5990 3.9969 -0.3566 31 1 3.1063 3.6135 -1.2220 32 1 0.3862 4.1221 -2.5111 33 1 1.7605 5.2543 -2.4950 34 1 3.1363 3.6317 -3.7462 35 1 1.0917 6.1484 -4.3896 36 1 2.8197 5.7703 -4.6863 37 1 2.1929 6.8094 -6.7685 38 1 0.5575 6.0720 -6.7391 39 1 3.1998 4.8325 -7.5154 40 1 1.5513 4.4276 -8.0819 41 1 3.0801 3.1673 -5.9486 42 1 1.4514 2.7363 -6.5373 43 1 2.1403 1.5276 -4.5624 44 1 0.6111 1.9146 -3.7360 45 1 3.3202 1.5127 -2.3873 46 1 1.9698 0.3532 -2.3782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384483879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:23 Heat of formation + Delta-G solvation = -14.952696 kcal Electronic energy + Delta-G solvation = -21799.265198 eV Core-core repulsion = 18915.464877 eV Total energy + Delta-G solvation = -2883.800321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.80163 -39.21042 -36.26585 -34.18656 -33.11456 -31.87673 -30.38215 -29.64206 -28.49141 -25.05119 -24.33233 -23.69965 -22.22179 -21.34024 -21.16515 -20.64687 -18.63789 -17.66682 -16.93359 -16.72209 -16.02516 -15.82458 -15.24690 -15.20082 -14.98115 -14.64226 -14.42022 -14.15353 -13.75121 -13.72574 -13.51072 -13.09337 -13.00455 -12.95170 -12.70993 -12.40578 -12.23198 -12.19226 -12.03369 -11.87601 -11.85075 -11.67471 -11.42791 -11.39554 -11.29560 -11.10025 -10.94616 -10.67444 -9.38404 -8.91100 -8.32798 -6.36807 1.29085 1.34557 1.45222 2.29756 2.97035 3.02949 3.29772 3.70033 3.76196 3.92667 4.04691 4.11408 4.30807 4.32456 4.37970 4.39642 4.47888 4.59744 4.62859 4.65526 4.67792 4.70184 4.82774 4.88643 4.89663 4.94887 5.00301 5.00565 5.07498 5.08634 5.12558 5.20571 5.23004 5.27995 5.29203 5.36106 5.40920 5.47829 5.56301 5.63365 6.00459 6.12090 6.15467 6.40241 6.51598 6.71742 7.31635 8.83819 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.031985 B = 0.004820 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.197539 B = 5807.978243 C = 6084.500651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.183 3.817 4 H 0.031 0.969 5 C -0.536 4.536 6 H 0.031 0.969 7 C 0.015 3.985 8 N -0.950 5.950 9 Si 0.949 3.051 10 H -0.266 1.266 11 H -0.302 1.302 12 H -0.244 1.244 13 N -0.512 5.512 14 C 0.064 3.936 15 C -0.091 4.091 16 C 0.085 3.915 17 N -0.515 5.515 18 C 0.028 3.972 19 C -0.117 4.117 20 C -0.127 4.127 21 C 0.030 3.970 22 C -0.092 4.092 23 C 0.064 3.936 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.264 0.736 30 H 0.067 0.933 31 H 0.003 0.997 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.013 0.987 35 H 0.087 0.913 36 H 0.033 0.967 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.030 0.970 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.002 0.998 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.055 6.503 -13.925 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C 0.074 3.926 4 H 0.049 0.951 5 C -0.575 4.575 6 H 0.050 0.950 7 C -0.182 4.182 8 N -0.590 5.590 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.230 1.230 12 H -0.168 1.168 13 N -0.236 5.236 14 C -0.065 4.065 15 C -0.129 4.129 16 C -0.024 4.024 17 N -0.239 5.239 18 C -0.100 4.100 19 C -0.155 4.155 20 C -0.166 4.166 21 C -0.098 4.098 22 C -0.130 4.130 23 C -0.065 4.065 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.022 0.978 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.031 0.969 35 H 0.105 0.895 36 H 0.051 0.949 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.048 0.952 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.020 0.980 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.998 6.338 -13.857 19.394 hybrid contribution 2.555 -0.387 1.175 2.839 sum -9.443 5.951 -12.683 16.895 Atomic orbital electron populations 1.21643 0.94141 1.01143 1.02207 1.21877 0.96871 0.97351 0.99934 1.19619 0.91390 0.92193 0.89373 0.95086 1.21874 0.92903 1.37243 1.05499 0.95036 1.25833 0.95733 0.96177 1.00487 1.70073 1.10930 1.47168 1.30820 0.85849 0.79628 0.79602 0.77348 1.19270 1.22993 1.16813 1.62384 1.57122 1.01718 1.02335 1.21882 0.96715 0.89544 0.98336 1.21517 1.01586 0.98136 0.91658 1.21726 0.94655 0.95243 0.90767 1.64837 1.54445 1.03500 1.01109 1.23316 0.99196 0.88999 0.98473 1.22473 1.02307 0.97758 0.92921 1.22404 1.01771 0.94262 0.98116 1.22921 0.97511 0.98593 0.90746 1.21517 1.02166 0.93590 0.95706 1.21925 0.95374 0.98570 0.90608 0.93644 0.91196 0.92390 0.92426 0.94801 0.92714 0.91469 0.97831 0.90045 0.91170 0.96877 0.89513 0.94889 0.89827 0.90147 0.91258 0.89663 0.95156 0.89962 0.91533 0.90093 0.97999 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 9.80 71.98 0.71 -3.76 16 2 C -0.12 -5.12 4.72 30.59 0.14 -4.97 16 3 C 0.18 8.47 1.34 44.17 0.06 8.53 16 4 H 0.03 1.50 7.14 -2.39 -0.02 1.48 16 5 C -0.54 -30.31 7.77 25.60 0.20 -30.11 16 6 H 0.03 2.01 6.08 -2.91 -0.02 2.00 16 7 C 0.02 0.89 5.45 84.66 0.46 1.35 16 8 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 9 Si 0.95 45.32 24.41 68.60 1.67 46.99 16 10 H -0.27 -12.16 6.83 99.48 0.68 -11.48 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.24 -10.82 6.53 99.48 0.65 -10.18 16 13 N -0.51 -20.64 4.10 -875.51 -3.59 -24.22 16 14 C 0.06 2.49 5.12 86.33 0.44 2.93 16 15 C -0.09 -2.77 5.15 30.65 0.16 -2.61 16 16 C 0.08 2.55 1.70 45.00 0.08 2.63 16 17 N -0.51 -12.86 5.11 -857.43 -4.38 -17.24 16 18 C 0.03 0.59 5.40 86.65 0.47 1.06 16 19 C -0.12 -1.89 7.06 31.80 0.22 -1.66 16 20 C -0.13 -2.12 6.93 31.47 0.22 -1.90 16 21 C 0.03 0.66 5.54 86.45 0.48 1.14 16 22 C -0.09 -2.83 5.29 30.65 0.16 -2.66 16 23 C 0.06 2.48 4.80 86.33 0.41 2.90 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 2.23 7.75 -2.39 -0.02 2.22 16 26 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.06 2.40 6.05 -2.39 -0.01 2.38 16 28 H 0.03 1.50 3.22 -2.39 -0.01 1.49 16 29 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 30 H 0.07 2.54 8.08 -2.39 -0.02 2.52 16 31 H 0.00 0.15 6.96 -2.39 -0.02 0.14 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.38 16 33 H 0.07 1.92 7.06 -2.39 -0.02 1.91 16 34 H 0.01 0.46 7.99 -2.39 -0.02 0.44 16 35 H 0.09 1.76 7.72 -2.38 -0.02 1.74 16 36 H 0.03 0.77 8.01 -2.39 -0.02 0.75 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.03 0.74 7.64 -2.39 -0.02 0.72 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.07 1.88 7.36 -2.39 -0.02 1.87 16 44 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 45 H 0.00 0.08 6.62 -2.39 -0.02 0.06 16 46 H 0.07 2.79 5.93 -2.39 -0.01 2.78 16 Total: -1.00 -64.21 329.31 -0.94 -65.15 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.84 Total: 16.02 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 4.21 Total: -27.14 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -7.67 Total: -101.02 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.67 Total: 46.99 kcal Total: -64.21 -0.94 -65.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384483879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.195 kcal (2) G-P(sol) polarization free energy of solvation -64.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds