Wall clock time and date at job start Mon Mar 30 2020 00:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30833 * 125.96215 * 2 1 4 4 C 1.33237 * 109.82932 * 180.12449 * 3 2 1 5 5 C 1.50701 * 125.52717 * 179.85533 * 4 3 2 6 6 H 1.09002 * 109.47060 * 344.71433 * 5 4 3 7 7 C 1.53002 * 109.47419 * 104.71514 * 5 4 3 8 8 N 1.46901 * 109.46921 * 224.71252 * 5 4 3 9 9 C 1.46900 * 110.99890 * 154.99793 * 8 5 4 10 10 C 1.52996 * 109.47450 * 180.02562 * 9 8 5 11 11 C 1.53003 * 109.46989 * 300.00061 * 10 9 8 12 12 C 1.52999 * 109.47087 * 59.99996 * 10 9 8 13 13 C 1.53004 * 109.47493 * 180.02562 * 10 9 8 14 14 C 1.50698 * 109.47255 * 179.97438 * 13 10 9 15 15 H 1.08002 * 119.99871 * 359.97438 * 14 13 10 16 16 C 1.37874 * 120.00089 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99859 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99807 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47175 * 90.00451 * 18 16 14 20 20 H 1.48500 * 109.47141 * 210.00171 * 18 16 14 21 21 H 1.48503 * 109.47269 * 330.00203 * 18 16 14 22 22 N 1.30715 * 108.94717 * 359.58554 * 4 3 2 23 23 N 1.34429 * 125.96200 * 179.66736 * 2 1 3 24 24 H 0.96998 * 126.82212 * 359.97438 * 23 2 1 25 25 H 1.09000 * 109.47767 * 270.30688 * 1 2 3 26 26 H 1.09005 * 109.47165 * 30.30672 * 1 2 3 27 27 H 1.09000 * 109.47211 * 150.30406 * 1 2 3 28 28 H 1.09000 * 109.46986 * 300.00096 * 7 5 4 29 29 H 1.09002 * 109.47075 * 59.99368 * 7 5 4 30 30 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 31 31 H 1.00898 * 111.00476 * 278.95183 * 8 5 4 32 32 H 1.09002 * 109.47391 * 300.00224 * 9 8 5 33 33 H 1.09005 * 109.47266 * 59.99895 * 9 8 5 34 34 H 1.08997 * 109.47061 * 59.99881 * 11 10 9 35 35 H 1.09000 * 109.47330 * 180.02562 * 11 10 9 36 36 H 1.09005 * 109.47339 * 299.99835 * 11 10 9 37 37 H 1.08993 * 109.47164 * 60.00358 * 12 10 9 38 38 H 1.09000 * 109.46899 * 180.02562 * 12 10 9 39 39 H 1.09004 * 109.47028 * 299.99787 * 12 10 9 40 40 H 1.08995 * 109.46568 * 300.00030 * 13 10 9 41 41 H 1.09003 * 109.46678 * 59.99669 * 13 10 9 42 42 H 0.97002 * 119.99431 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0027 5 6 4.7372 1.6236 -0.0067 6 1 4.4065 2.6262 -0.2780 7 6 5.3680 1.6542 1.3869 8 7 5.7294 1.1542 -0.9830 9 6 6.5682 2.2636 -1.4560 10 6 7.5864 1.7371 -2.4693 11 6 8.4683 0.6789 -1.8033 12 6 6.8492 1.1133 -3.6560 13 6 8.4605 2.8924 -2.9615 14 6 9.4638 2.3737 -3.9591 15 1 9.4770 1.3247 -4.2161 16 6 10.3655 3.2379 -4.5430 17 7 11.2408 2.7852 -5.4140 18 14 10.3430 5.0520 -4.0979 19 1 11.2434 5.2890 -2.9411 20 1 10.8080 5.8523 -5.2592 21 1 8.9599 5.4567 -3.7398 22 7 3.6194 -0.6168 0.0044 23 7 2.2964 -1.0881 0.0063 24 1 2.0093 -2.0146 0.0120 25 1 -0.3634 0.0055 1.0276 26 1 -0.3634 0.8873 -0.5186 27 1 -0.3634 -0.8927 -0.5091 28 1 4.6318 2.0025 2.1114 29 1 5.6985 0.6516 1.6582 30 1 6.2226 2.3307 1.3841 31 1 6.2944 0.4130 -0.5966 32 1 5.9400 3.0173 -1.9309 33 1 7.0931 2.7084 -0.6105 34 1 7.8459 -0.1442 -1.4524 35 1 9.1940 0.3041 -2.5251 36 1 8.9935 1.1233 -0.9579 37 1 6.2210 1.8671 -4.1305 38 1 7.5746 0.7378 -4.3777 39 1 6.2268 0.2900 -3.3051 40 1 7.8324 3.6465 -3.4358 41 1 8.9856 3.3365 -2.1158 42 1 11.8749 3.3934 -5.8250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392386648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:03 Heat of formation + Delta-G solvation = 65.947683 kcal Electronic energy + Delta-G solvation = -20400.900628 eV Core-core repulsion = 17417.068067 eV Total energy + Delta-G solvation = -2983.832560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.21181 -38.04663 -35.59339 -32.83033 -32.47166 -32.06555 -29.61791 -28.10191 -27.44970 -26.31112 -25.33324 -23.95428 -21.97257 -21.08980 -20.05751 -18.20715 -17.64718 -16.74053 -15.92969 -15.23270 -15.11206 -14.46539 -14.26563 -13.99348 -13.49736 -13.40016 -13.19693 -13.09757 -12.76864 -12.46555 -12.22602 -12.04993 -11.89096 -11.73504 -11.40426 -11.02824 -10.90177 -10.79926 -10.44340 -10.29859 -10.16116 -10.09301 -9.77365 -9.63289 -9.54450 -9.23007 -8.86027 -8.45506 -8.14536 -5.95842 -3.91729 1.50969 2.52532 2.79526 3.35557 3.43318 3.47378 3.72521 4.42158 4.49100 4.52343 4.70496 5.01055 5.02432 5.14986 5.31581 5.37382 5.41320 5.55994 5.64530 5.70029 5.81235 5.92363 6.02344 6.15948 6.23765 6.31060 6.38400 6.48114 6.66369 6.74757 6.86434 6.90979 7.13558 7.19251 7.23021 7.32272 7.38900 7.51922 7.67333 7.89971 8.04848 8.64550 9.10484 9.67411 11.17371 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.035633 B = 0.003699 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.599935 B = 7568.027922 C = 7680.595327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.275 3.725 3 N -0.539 5.539 4 C 0.251 3.749 5 C 0.174 3.826 6 H 0.103 0.897 7 C -0.175 4.175 8 N -0.676 5.676 9 C 0.069 3.931 10 C -0.048 4.048 11 C -0.131 4.131 12 C -0.117 4.117 13 C -0.004 4.004 14 C -0.506 4.506 15 H 0.078 0.922 16 C 0.064 3.936 17 N -0.907 5.907 18 Si 0.876 3.124 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.266 1.266 22 N -0.298 5.298 23 N -0.488 5.488 24 H 0.437 0.563 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.347 0.653 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.015 0.985 41 H 0.008 0.992 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.377 -5.964 13.842 25.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.003 4.003 3 N -0.268 5.268 4 C -0.032 4.032 5 C 0.061 3.939 6 H 0.121 0.879 7 C -0.235 4.235 8 N -0.308 5.308 9 C -0.060 4.060 10 C -0.048 4.048 11 C -0.188 4.188 12 C -0.175 4.175 13 C -0.042 4.042 14 C -0.544 4.544 15 H 0.096 0.904 16 C -0.136 4.136 17 N -0.547 5.547 18 Si 0.703 3.297 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.191 1.191 22 N -0.126 5.126 23 N -0.206 5.206 24 H 0.282 0.718 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.168 0.832 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.027 0.973 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.073 -5.887 13.187 24.728 hybrid contribution 0.298 0.495 0.895 1.065 sum -19.775 -5.392 14.082 24.868 Atomic orbital electron populations 1.20357 0.83900 1.04930 1.04308 1.24336 0.96498 0.83073 0.96416 1.70316 1.01520 1.29553 1.25442 1.24149 0.92726 0.89997 0.96374 1.19694 0.87414 0.95160 0.91629 0.87892 1.22457 1.01433 1.02792 0.96852 1.60389 1.19255 1.12203 1.38970 1.22199 0.94331 0.92236 0.97225 1.20414 0.93546 0.96866 0.94007 1.21788 0.99274 0.97457 1.00321 1.21606 0.99078 0.99407 0.97373 1.19630 0.94891 0.93567 0.96104 1.21147 1.14010 0.96916 1.22292 0.90439 1.25018 0.95340 0.98386 0.94897 1.69915 1.20194 1.35239 1.29306 0.86845 0.78739 0.86185 0.77888 1.20527 1.21605 1.19056 1.78039 0.95831 1.12570 1.26199 1.48043 1.04684 1.09837 1.58071 0.71789 0.89220 0.88423 0.90004 0.91996 0.91991 0.91166 0.83201 0.91334 0.95419 0.94521 0.91193 0.94086 0.94250 0.92182 0.93731 0.96657 0.97324 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.51 36.00 0.38 0.01 16 2 C 0.28 2.79 8.24 -155.70 -1.28 1.51 16 3 N -0.54 -7.36 11.19 -8.16 -0.09 -7.45 16 4 C 0.25 3.61 6.99 -156.85 -1.10 2.52 16 5 C 0.17 2.37 3.13 -68.86 -0.22 2.16 16 6 H 0.10 1.41 7.80 -51.93 -0.40 1.01 16 7 C -0.18 -2.02 9.14 37.16 0.34 -1.68 16 8 N -0.68 -10.22 5.43 -107.95 -0.59 -10.81 16 9 C 0.07 1.14 4.44 -3.83 -0.02 1.12 16 10 C -0.05 -0.94 0.60 -154.51 -0.09 -1.04 16 11 C -0.13 -2.47 7.89 37.16 0.29 -2.17 16 12 C -0.12 -2.35 8.06 37.16 0.30 -2.05 16 13 C 0.00 -0.10 3.11 -27.88 -0.09 -0.18 16 14 C -0.51 -14.11 8.20 -34.44 -0.28 -14.40 16 15 H 0.08 2.31 5.92 -52.49 -0.31 2.00 16 16 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 17 N -0.91 -28.10 13.96 55.43 0.77 -27.32 16 18 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 22 N -0.30 -4.17 12.78 32.42 0.41 -3.76 16 23 N -0.49 -4.94 7.45 32.62 0.24 -4.69 16 24 H 0.44 2.72 8.96 -182.34 -1.63 1.09 16 25 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.07 0.78 7.45 -51.93 -0.39 0.39 16 31 H 0.35 5.20 6.51 -39.29 -0.26 4.95 16 32 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 33 H 0.03 0.44 7.44 -51.93 -0.39 0.05 16 34 H 0.04 0.60 6.57 -51.93 -0.34 0.26 16 35 H 0.07 1.48 6.61 -51.93 -0.34 1.14 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 39 H 0.04 0.83 7.60 -51.93 -0.39 0.44 16 40 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 41 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 334.43 15.07 5.04 5.04 Total: -1.00 -33.63 334.43 -8.85 -42.48 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.11 Total: 1.67 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -1.86 Total: -12.45 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.75 Total: -54.03 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.63 -8.85 -42.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392386648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.423 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds