Wall clock time and date at job start Mon Mar 30 2020 00:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30833 * 125.96215 * 2 1 4 4 C 1.33237 * 109.82932 * 180.12449 * 3 2 1 5 5 C 1.50701 * 125.52717 * 179.85533 * 4 3 2 6 6 H 1.09002 * 109.47060 * 344.71433 * 5 4 3 7 7 C 1.53002 * 109.47419 * 104.71514 * 5 4 3 8 8 N 1.46901 * 109.46921 * 224.71252 * 5 4 3 9 9 C 1.46900 * 110.99890 * 154.99793 * 8 5 4 10 10 C 1.52996 * 109.47450 * 180.02562 * 9 8 5 11 11 C 1.53003 * 109.46989 * 300.00061 * 10 9 8 12 12 C 1.52999 * 109.47087 * 59.99996 * 10 9 8 13 13 C 1.53004 * 109.47493 * 180.02562 * 10 9 8 14 14 C 1.50698 * 109.47255 * 179.97438 * 13 10 9 15 15 H 1.08002 * 119.99871 * 359.97438 * 14 13 10 16 16 C 1.37874 * 120.00089 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99859 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99807 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47175 * 90.00451 * 18 16 14 20 20 H 1.48500 * 109.47141 * 210.00171 * 18 16 14 21 21 H 1.48503 * 109.47269 * 330.00203 * 18 16 14 22 22 N 1.30715 * 108.94717 * 359.58554 * 4 3 2 23 23 N 1.34429 * 125.96200 * 179.66736 * 2 1 3 24 24 H 0.96998 * 126.82212 * 359.97438 * 23 2 1 25 25 H 1.09000 * 109.47767 * 270.30688 * 1 2 3 26 26 H 1.09005 * 109.47165 * 30.30672 * 1 2 3 27 27 H 1.09000 * 109.47211 * 150.30406 * 1 2 3 28 28 H 1.09000 * 109.46986 * 300.00096 * 7 5 4 29 29 H 1.09002 * 109.47075 * 59.99368 * 7 5 4 30 30 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 31 31 H 1.00898 * 111.00476 * 278.95183 * 8 5 4 32 32 H 1.09002 * 109.47391 * 300.00224 * 9 8 5 33 33 H 1.09005 * 109.47266 * 59.99895 * 9 8 5 34 34 H 1.08997 * 109.47061 * 59.99881 * 11 10 9 35 35 H 1.09000 * 109.47330 * 180.02562 * 11 10 9 36 36 H 1.09005 * 109.47339 * 299.99835 * 11 10 9 37 37 H 1.08993 * 109.47164 * 60.00358 * 12 10 9 38 38 H 1.09000 * 109.46899 * 180.02562 * 12 10 9 39 39 H 1.09004 * 109.47028 * 299.99787 * 12 10 9 40 40 H 1.08995 * 109.46568 * 300.00030 * 13 10 9 41 41 H 1.09003 * 109.46678 * 59.99669 * 13 10 9 42 42 H 0.97002 * 119.99431 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0027 5 6 4.7372 1.6236 -0.0067 6 1 4.4065 2.6262 -0.2780 7 6 5.3680 1.6542 1.3869 8 7 5.7294 1.1542 -0.9830 9 6 6.5682 2.2636 -1.4560 10 6 7.5864 1.7371 -2.4693 11 6 8.4683 0.6789 -1.8033 12 6 6.8492 1.1133 -3.6560 13 6 8.4605 2.8924 -2.9615 14 6 9.4638 2.3737 -3.9591 15 1 9.4770 1.3247 -4.2161 16 6 10.3655 3.2379 -4.5430 17 7 11.2408 2.7852 -5.4140 18 14 10.3430 5.0520 -4.0979 19 1 11.2434 5.2890 -2.9411 20 1 10.8080 5.8523 -5.2592 21 1 8.9599 5.4567 -3.7398 22 7 3.6194 -0.6168 0.0044 23 7 2.2964 -1.0881 0.0063 24 1 2.0093 -2.0146 0.0120 25 1 -0.3634 0.0055 1.0276 26 1 -0.3634 0.8873 -0.5186 27 1 -0.3634 -0.8927 -0.5091 28 1 4.6318 2.0025 2.1114 29 1 5.6985 0.6516 1.6582 30 1 6.2226 2.3307 1.3841 31 1 6.2944 0.4130 -0.5966 32 1 5.9400 3.0173 -1.9309 33 1 7.0931 2.7084 -0.6105 34 1 7.8459 -0.1442 -1.4524 35 1 9.1940 0.3041 -2.5251 36 1 8.9935 1.1233 -0.9579 37 1 6.2210 1.8671 -4.1305 38 1 7.5746 0.7378 -4.3777 39 1 6.2268 0.2900 -3.3051 40 1 7.8324 3.6465 -3.4358 41 1 8.9856 3.3365 -2.1158 42 1 11.8749 3.3934 -5.8250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392386648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:03 Heat of formation + Delta-G solvation = 42.716006 kcal Electronic energy + Delta-G solvation = -20401.908029 eV Core-core repulsion = 17417.068067 eV Total energy + Delta-G solvation = -2984.839961 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.07731 -39.45244 -36.92248 -34.51078 -33.40671 -33.27652 -30.87078 -29.28938 -28.76506 -27.92642 -26.68987 -25.14152 -23.70443 -21.94881 -21.05404 -19.55244 -18.85596 -18.74006 -16.86701 -16.46880 -16.36626 -15.96837 -15.61070 -15.19105 -14.84096 -14.72064 -14.31167 -14.11355 -13.93010 -13.66184 -13.51251 -13.42085 -12.99123 -12.82273 -12.73884 -12.61158 -12.46706 -12.32576 -12.17329 -12.06576 -11.71276 -11.36722 -11.09654 -11.01722 -10.96459 -10.82153 -10.67911 -10.39399 -9.31868 -8.19836 -6.20174 0.67874 1.37776 1.40073 1.51351 1.81053 1.87298 2.41812 2.86805 3.15402 3.44141 3.72234 3.92307 4.07993 4.15139 4.25873 4.27486 4.34307 4.62293 4.68428 4.72825 4.78902 4.82668 4.90099 4.93132 5.05406 5.07393 5.10079 5.14491 5.19116 5.32979 5.38779 5.44953 5.45410 5.52457 5.62819 5.76013 5.82569 6.06515 6.28791 6.42889 6.48475 6.87248 7.17361 7.42259 8.96590 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.035633 B = 0.003699 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.599935 B = 7568.027922 C = 7680.595327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.282 3.718 3 N -0.574 5.574 4 C 0.236 3.764 5 C 0.175 3.825 6 H 0.100 0.900 7 C -0.166 4.166 8 N -0.680 5.680 9 C 0.081 3.919 10 C -0.047 4.047 11 C -0.123 4.123 12 C -0.107 4.107 13 C -0.002 4.002 14 C -0.503 4.503 15 H 0.042 0.958 16 C 0.000 4.000 17 N -0.957 5.957 18 Si 0.942 3.058 19 H -0.269 1.269 20 H -0.290 1.290 21 H -0.248 1.248 22 N -0.329 5.329 23 N -0.480 5.480 24 H 0.453 0.547 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.348 0.652 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.060 0.940 35 H 0.035 0.965 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.028 0.972 39 H 0.057 0.943 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.680 -5.352 15.830 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.004 3.996 3 N -0.305 5.305 4 C -0.047 4.047 5 C 0.062 3.938 6 H 0.118 0.882 7 C -0.225 4.225 8 N -0.312 5.312 9 C -0.047 4.047 10 C -0.048 4.048 11 C -0.181 4.181 12 C -0.165 4.165 13 C -0.040 4.040 14 C -0.542 4.542 15 H 0.061 0.939 16 C -0.196 4.196 17 N -0.599 5.599 18 Si 0.767 3.233 19 H -0.194 1.194 20 H -0.216 1.216 21 H -0.171 1.171 22 N -0.158 5.158 23 N -0.200 5.200 24 H 0.301 0.699 25 H 0.128 0.872 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.169 0.831 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.032 0.968 41 H 0.035 0.965 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.412 -5.307 15.195 27.592 hybrid contribution 0.916 0.158 0.256 0.964 sum -21.496 -5.150 15.452 26.969 Atomic orbital electron populations 1.20616 0.80213 1.06346 1.06009 1.25223 0.98218 0.82153 0.93977 1.70307 1.01631 1.31346 1.27251 1.24236 0.93266 0.90249 0.96967 1.19695 0.86987 0.94891 0.92178 0.88189 1.22356 1.01606 1.02843 0.95729 1.60287 1.19121 1.11703 1.40131 1.21936 0.93666 0.92466 0.96665 1.20343 0.93951 0.95724 0.94756 1.21687 0.98797 0.98040 0.99558 1.21488 0.98315 0.99711 0.96944 1.19586 0.94397 0.94868 0.95119 1.21437 1.14603 0.95501 1.22612 0.93947 1.25941 0.95110 1.03555 0.94981 1.70075 1.21556 1.37063 1.31177 0.85775 0.79760 0.80025 0.77775 1.19416 1.21611 1.17127 1.77921 0.98091 1.12609 1.27196 1.47974 1.03603 1.10887 1.57536 0.69881 0.87173 0.88385 0.87173 0.91294 0.92197 0.90531 0.83110 0.91420 0.94050 0.92100 0.94561 0.93152 0.94464 0.95303 0.92357 0.96773 0.96535 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.51 71.23 0.75 0.27 16 2 C 0.28 5.10 8.24 138.22 1.14 6.24 16 3 N -0.57 -14.86 11.19 -179.73 -2.01 -16.87 16 4 C 0.24 6.50 6.99 138.63 0.97 7.47 16 5 C 0.18 4.49 3.13 44.17 0.14 4.63 16 6 H 0.10 2.59 7.80 -2.39 -0.02 2.57 16 7 C -0.17 -3.49 9.14 71.98 0.66 -2.83 16 8 N -0.68 -19.39 5.43 -495.44 -2.69 -22.08 16 9 C 0.08 2.55 4.44 86.30 0.38 2.93 16 10 C -0.05 -1.83 0.60 -52.18 -0.03 -1.86 16 11 C -0.12 -4.58 7.89 71.98 0.57 -4.01 16 12 C -0.11 -4.32 8.06 71.98 0.58 -3.74 16 13 C 0.00 -0.09 3.11 29.85 0.09 0.01 16 14 C -0.50 -28.70 8.20 25.60 0.21 -28.49 16 15 H 0.04 2.66 5.92 -2.91 -0.02 2.64 16 16 C 0.00 -0.03 5.47 84.65 0.46 0.44 16 17 N -0.96 -60.99 13.96 21.45 0.30 -60.69 16 18 Si 0.94 45.09 27.47 68.60 1.88 46.97 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 21 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 22 N -0.33 -8.77 12.78 -51.33 -0.66 -9.42 16 23 N -0.48 -8.78 7.45 -50.71 -0.38 -9.16 16 24 H 0.45 4.64 8.96 -213.10 -1.91 2.73 16 25 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 30 H 0.08 1.50 7.45 -2.39 -0.02 1.49 16 31 H 0.35 9.78 6.51 -89.70 -0.58 9.20 16 32 H 0.07 2.15 8.06 -2.39 -0.02 2.13 16 33 H 0.04 1.19 7.44 -2.38 -0.02 1.18 16 34 H 0.06 1.94 6.57 -2.39 -0.02 1.92 16 35 H 0.04 1.57 6.61 -2.39 -0.02 1.55 16 36 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.03 1.30 6.62 -2.39 -0.02 1.29 16 39 H 0.06 2.15 7.60 -2.39 -0.02 2.14 16 40 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 41 H 0.02 0.74 7.57 -2.39 -0.02 0.73 16 42 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -74.13 334.43 0.84 -73.29 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -1.53 Total: 16.91 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 5.92 Total: -18.95 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -5.44 Total: -118.22 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -74.13 0.84 -73.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392386648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.005 kcal (2) G-P(sol) polarization free energy of solvation -74.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds