Wall clock time and date at job start Mon Mar 30 2020 00:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47235 * 2 1 4 4 N 1.30831 * 125.96111 * 305.03591 * 3 2 1 5 5 C 1.33246 * 109.82971 * 179.97438 * 4 3 2 6 6 C 1.50697 * 125.52675 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47066 * 89.99832 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46923 * 299.99733 * 9 8 7 11 11 C 1.52999 * 109.46998 * 59.99872 * 9 8 7 12 12 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 13 13 C 1.50701 * 109.46820 * 179.97438 * 12 9 8 14 14 H 1.08000 * 120.00070 * 0.02562 * 13 12 9 15 15 C 1.37878 * 120.00019 * 179.97438 * 13 12 9 16 16 N 1.31518 * 119.99993 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 120.00130 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47108 * 89.99504 * 17 15 13 19 19 H 1.48498 * 109.47097 * 209.99712 * 17 15 13 20 20 H 1.48499 * 109.46508 * 329.99366 * 17 15 13 21 21 N 1.30713 * 108.94436 * 0.25888 * 5 4 3 22 22 N 1.34428 * 125.96301 * 125.00130 * 3 2 1 23 23 H 0.97006 * 126.81948 * 0.02562 * 22 3 2 24 24 H 1.09003 * 109.47055 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46722 * 299.99589 * 1 2 3 26 26 H 1.08995 * 109.47567 * 59.99566 * 1 2 3 27 27 H 1.09004 * 109.47198 * 240.00468 * 2 1 3 28 28 H 1.08995 * 109.47567 * 120.00434 * 2 1 3 29 29 H 1.09001 * 109.47558 * 329.99996 * 6 5 4 30 30 H 1.08998 * 109.47216 * 209.99658 * 6 5 4 31 31 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 32 32 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 33 33 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 34 34 H 1.09002 * 109.47301 * 60.00027 * 10 9 8 35 35 H 1.09001 * 109.47017 * 180.02562 * 10 9 8 36 36 H 1.09005 * 109.47249 * 300.00302 * 10 9 8 37 37 H 1.09001 * 109.46999 * 60.00126 * 11 9 8 38 38 H 1.09001 * 109.46478 * 179.97438 * 11 9 8 39 39 H 1.08993 * 109.47197 * 299.99817 * 11 9 8 40 40 H 1.08993 * 109.47740 * 299.99810 * 12 9 8 41 41 H 1.09005 * 109.47573 * 59.99976 * 12 9 8 42 42 H 0.96999 * 120.00009 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7153 2.3478 -0.8671 5 6 2.3419 3.4839 -0.5636 6 6 2.2302 4.7771 -1.3293 7 7 1.1241 5.5752 -0.7837 8 6 0.9846 6.8457 -1.5078 9 6 -0.1743 7.6476 -0.9120 10 6 -1.4696 6.8432 -1.0393 11 6 0.1074 7.9305 0.5650 12 6 -0.3191 8.9711 -1.6657 13 6 -1.4610 9.7607 -1.0793 14 1 -2.0265 9.3589 -0.2516 15 6 -1.7831 10.9966 -1.5989 16 7 -2.7799 11.6854 -1.0875 17 14 -0.8045 11.6920 -3.0301 18 1 -1.4286 11.2677 -4.3090 19 1 -0.7973 13.1748 -2.9507 20 1 0.5903 11.1862 -2.9681 21 7 3.0740 3.2931 0.5023 22 7 2.8839 1.9571 0.8913 23 1 3.2896 1.5091 1.6501 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.0388 4.5616 -2.3805 30 1 3.1615 5.3358 -1.2366 31 1 1.2460 5.7337 0.2052 32 1 1.9072 7.4190 -1.4167 33 1 0.7844 6.6442 -2.5601 34 1 -1.3661 5.9004 -0.5021 35 1 -2.2952 7.4147 -0.6152 36 1 -1.6702 6.6417 -2.0915 37 1 1.0302 8.5035 0.6555 38 1 -0.7180 8.5021 0.9892 39 1 0.2109 6.9878 1.1021 40 1 0.6036 9.5440 -1.5747 41 1 -0.5196 8.7700 -2.7181 42 1 -3.0067 12.5547 -1.4532 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392485856.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:36 Heat of formation + Delta-G solvation = 63.687388 kcal Electronic energy + Delta-G solvation = -20059.244673 eV Core-core repulsion = 17075.314099 eV Total energy + Delta-G solvation = -2983.930574 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.30479 -37.77775 -35.14476 -34.09168 -32.64765 -31.97861 -30.28108 -27.89438 -26.73517 -26.31041 -24.60126 -24.35287 -21.83420 -21.20031 -20.44148 -18.24850 -17.71511 -16.74536 -16.05459 -15.39688 -15.16713 -14.81987 -14.42807 -14.13678 -13.88881 -13.33254 -13.05325 -12.90193 -12.63400 -12.29979 -12.23432 -12.06103 -11.90444 -11.79323 -11.48467 -11.01953 -10.90492 -10.80436 -10.45147 -10.32985 -10.25143 -10.12178 -9.75248 -9.68553 -9.64054 -9.24275 -8.86091 -8.45480 -8.16272 -5.95814 -3.91754 1.39716 2.41210 2.70506 3.36048 3.43385 3.47000 3.72986 4.30294 4.42206 4.52341 4.68726 4.77560 4.90277 5.11196 5.37341 5.43320 5.45028 5.50569 5.60941 5.68457 5.75252 5.92948 5.94232 6.08746 6.18040 6.26850 6.29974 6.47002 6.66271 6.74244 6.82468 6.86317 7.11867 7.16770 7.23540 7.30876 7.38214 7.49886 7.61708 7.89806 7.97706 8.64439 9.10407 9.67366 11.17371 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.036447 B = 0.003400 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.053553 B = 8232.228195 C = 8468.446219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C 0.280 3.720 4 N -0.519 5.519 5 C 0.243 3.757 6 C 0.150 3.850 7 N -0.677 5.677 8 C 0.069 3.931 9 C -0.048 4.048 10 C -0.118 4.118 11 C -0.131 4.131 12 C -0.004 4.004 13 C -0.506 4.506 14 H 0.078 0.922 15 C 0.064 3.936 16 N -0.907 5.907 17 Si 0.876 3.124 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.267 1.267 21 N -0.316 5.316 22 N -0.485 5.485 23 H 0.437 0.563 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.342 0.658 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.013 0.987 41 H 0.011 0.989 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.334 -23.327 2.757 26.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C 0.001 3.999 4 N -0.248 5.248 5 C -0.041 4.041 6 C 0.018 3.982 7 N -0.310 5.310 8 C -0.060 4.060 9 C -0.049 4.049 10 C -0.175 4.175 11 C -0.188 4.188 12 C -0.042 4.042 13 C -0.544 4.544 14 H 0.096 0.904 15 C -0.136 4.136 16 N -0.546 5.546 17 Si 0.704 3.296 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.191 1.191 21 N -0.146 5.146 22 N -0.203 5.203 23 H 0.282 0.718 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.162 0.838 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.053 0.947 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.981 -22.913 2.361 25.517 hybrid contribution 1.520 0.564 0.151 1.628 sum 12.500 -22.348 2.512 25.730 Atomic orbital electron populations 1.21697 0.92527 1.02409 1.03749 1.20151 0.97962 0.86043 1.04077 1.24482 0.90656 0.97546 0.87214 1.70347 1.27123 0.99379 1.27927 1.24199 0.91882 0.95667 0.92303 1.20146 0.94074 0.86127 0.97825 1.60492 1.42762 1.19573 1.08167 1.22175 0.97975 0.87636 0.98193 1.20420 0.93529 0.95571 0.95356 1.21613 0.97078 0.98258 1.00543 1.21783 1.01840 0.99232 0.95958 1.19630 0.97314 0.92060 0.95197 1.21146 1.14025 1.01519 1.17695 0.90434 1.25020 0.94913 0.96970 0.96731 1.69914 1.28988 1.13457 1.42285 0.86840 0.81404 0.77947 0.83436 1.20421 1.21645 1.19139 1.78014 1.25775 0.93574 1.17215 1.48010 1.37436 1.09189 1.25706 0.71753 0.91494 0.92433 0.90732 0.88373 0.89879 0.88335 0.93077 0.83828 0.95538 0.91109 0.93690 0.92183 0.94091 0.94078 0.91139 0.94694 0.96886 0.97039 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.87 37.16 0.37 -0.58 16 2 C -0.04 -0.24 6.56 -27.88 -0.18 -0.43 16 3 C 0.28 2.83 7.51 -155.70 -1.17 1.66 16 4 N -0.52 -7.05 11.16 -8.16 -0.09 -7.14 16 5 C 0.24 3.41 7.65 -156.85 -1.20 2.21 16 6 C 0.15 2.03 6.31 -4.97 -0.03 2.00 16 7 N -0.68 -10.31 5.70 -115.05 -0.66 -10.96 16 8 C 0.07 1.15 4.65 -3.82 -0.02 1.13 16 9 C -0.05 -0.95 0.60 -154.51 -0.09 -1.05 16 10 C -0.12 -2.34 8.06 37.16 0.30 -2.04 16 11 C -0.13 -2.49 7.89 37.16 0.29 -2.20 16 12 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 13 C -0.51 -14.12 8.20 -34.44 -0.28 -14.40 16 14 H 0.08 2.31 5.92 -52.49 -0.31 2.00 16 15 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 16 N -0.91 -28.07 13.96 55.43 0.77 -27.30 16 17 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 20 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 21 N -0.32 -4.24 12.80 32.42 0.41 -3.82 16 22 N -0.49 -4.73 7.45 32.62 0.24 -4.48 16 23 H 0.44 2.54 8.96 -182.33 -1.63 0.91 16 24 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.34 5.28 6.76 -39.29 -0.27 5.01 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.04 0.83 7.60 -51.93 -0.39 0.43 16 35 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.50 6.62 -51.93 -0.34 1.16 16 39 H 0.03 0.58 6.57 -51.93 -0.34 0.24 16 40 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 41 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -33.21 336.87 -9.33 -42.54 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.22 Total: 0.91 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -2.20 Total: -12.12 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.68 Total: -53.70 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.21 -9.33 -42.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392485856.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.226 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds