Wall clock time and date at job start Mon Mar 30 2020 00:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47235 * 2 1 4 4 N 1.30831 * 125.96111 * 305.03591 * 3 2 1 5 5 C 1.33246 * 109.82971 * 179.97438 * 4 3 2 6 6 C 1.50697 * 125.52675 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47066 * 89.99832 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46923 * 299.99733 * 9 8 7 11 11 C 1.52999 * 109.46998 * 59.99872 * 9 8 7 12 12 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 13 13 C 1.50701 * 109.46820 * 179.97438 * 12 9 8 14 14 H 1.08000 * 120.00070 * 0.02562 * 13 12 9 15 15 C 1.37878 * 120.00019 * 179.97438 * 13 12 9 16 16 N 1.31518 * 119.99993 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 120.00130 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47108 * 89.99504 * 17 15 13 19 19 H 1.48498 * 109.47097 * 209.99712 * 17 15 13 20 20 H 1.48499 * 109.46508 * 329.99366 * 17 15 13 21 21 N 1.30713 * 108.94436 * 0.25888 * 5 4 3 22 22 N 1.34428 * 125.96301 * 125.00130 * 3 2 1 23 23 H 0.97006 * 126.81948 * 0.02562 * 22 3 2 24 24 H 1.09003 * 109.47055 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46722 * 299.99589 * 1 2 3 26 26 H 1.08995 * 109.47567 * 59.99566 * 1 2 3 27 27 H 1.09004 * 109.47198 * 240.00468 * 2 1 3 28 28 H 1.08995 * 109.47567 * 120.00434 * 2 1 3 29 29 H 1.09001 * 109.47558 * 329.99996 * 6 5 4 30 30 H 1.08998 * 109.47216 * 209.99658 * 6 5 4 31 31 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 32 32 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 33 33 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 34 34 H 1.09002 * 109.47301 * 60.00027 * 10 9 8 35 35 H 1.09001 * 109.47017 * 180.02562 * 10 9 8 36 36 H 1.09005 * 109.47249 * 300.00302 * 10 9 8 37 37 H 1.09001 * 109.46999 * 60.00126 * 11 9 8 38 38 H 1.09001 * 109.46478 * 179.97438 * 11 9 8 39 39 H 1.08993 * 109.47197 * 299.99817 * 11 9 8 40 40 H 1.08993 * 109.47740 * 299.99810 * 12 9 8 41 41 H 1.09005 * 109.47573 * 59.99976 * 12 9 8 42 42 H 0.96999 * 120.00009 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7153 2.3478 -0.8671 5 6 2.3419 3.4839 -0.5636 6 6 2.2302 4.7771 -1.3293 7 7 1.1241 5.5752 -0.7837 8 6 0.9846 6.8457 -1.5078 9 6 -0.1743 7.6476 -0.9120 10 6 -1.4696 6.8432 -1.0393 11 6 0.1074 7.9305 0.5650 12 6 -0.3191 8.9711 -1.6657 13 6 -1.4610 9.7607 -1.0793 14 1 -2.0265 9.3589 -0.2516 15 6 -1.7831 10.9966 -1.5989 16 7 -2.7799 11.6854 -1.0875 17 14 -0.8045 11.6920 -3.0301 18 1 -1.4286 11.2677 -4.3090 19 1 -0.7973 13.1748 -2.9507 20 1 0.5903 11.1862 -2.9681 21 7 3.0740 3.2931 0.5023 22 7 2.8839 1.9571 0.8913 23 1 3.2896 1.5091 1.6501 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.0388 4.5616 -2.3805 30 1 3.1615 5.3358 -1.2366 31 1 1.2460 5.7337 0.2052 32 1 1.9072 7.4190 -1.4167 33 1 0.7844 6.6442 -2.5601 34 1 -1.3661 5.9004 -0.5021 35 1 -2.2952 7.4147 -0.6152 36 1 -1.6702 6.6417 -2.0915 37 1 1.0302 8.5035 0.6555 38 1 -0.7180 8.5021 0.9892 39 1 0.2109 6.9878 1.1021 40 1 0.6036 9.5440 -1.5747 41 1 -0.5196 8.7700 -2.7181 42 1 -3.0067 12.5547 -1.4532 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392485856.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:35 Heat of formation + Delta-G solvation = 40.963016 kcal Electronic energy + Delta-G solvation = -20060.230076 eV Core-core repulsion = 17075.314099 eV Total energy + Delta-G solvation = -2984.915977 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.16019 -39.26874 -36.30944 -34.97419 -34.25717 -33.33292 -31.15811 -29.73340 -28.02034 -27.92792 -25.85738 -25.20223 -23.61116 -22.02086 -21.32495 -19.53132 -18.89254 -18.83176 -16.97086 -16.61353 -16.33241 -16.06040 -15.59884 -15.47990 -15.03813 -14.76269 -14.51499 -14.13917 -13.97434 -13.74942 -13.43892 -13.27595 -12.93463 -12.78049 -12.73722 -12.46978 -12.39678 -12.23348 -12.06666 -11.99214 -11.70219 -11.36223 -11.17907 -11.02909 -10.98699 -10.82663 -10.67885 -10.52521 -9.34974 -8.19716 -6.20115 0.55599 1.38717 1.39766 1.51170 1.69954 1.78986 2.41895 2.95368 3.15481 3.38195 3.62939 3.79706 4.09376 4.18325 4.27735 4.31644 4.34422 4.50445 4.60078 4.73622 4.75707 4.81635 4.92795 5.01802 5.04253 5.09362 5.10704 5.18450 5.23567 5.31698 5.37292 5.46219 5.46553 5.52300 5.62272 5.75667 5.81797 6.02019 6.19363 6.36844 6.44429 6.87236 7.11322 7.42273 8.96678 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.036447 B = 0.003400 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.053553 B = 8232.228195 C = 8468.446219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.039 4.039 3 C 0.286 3.714 4 N -0.555 5.555 5 C 0.228 3.772 6 C 0.154 3.846 7 N -0.680 5.680 8 C 0.081 3.919 9 C -0.048 4.048 10 C -0.108 4.108 11 C -0.124 4.124 12 C -0.002 4.002 13 C -0.504 4.504 14 H 0.042 0.958 15 C 0.000 4.000 16 N -0.956 5.956 17 Si 0.942 3.058 18 H -0.270 1.270 19 H -0.290 1.290 20 H -0.247 1.247 21 N -0.340 5.340 22 N -0.474 5.474 23 H 0.454 0.546 24 H 0.091 0.909 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.341 0.659 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.028 0.972 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.037 0.963 39 H 0.058 0.942 40 H 0.016 0.984 41 H 0.015 0.985 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.499 -25.530 2.167 28.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 C 0.007 3.993 4 N -0.285 5.285 5 C -0.056 4.056 6 C 0.022 3.978 7 N -0.313 5.313 8 C -0.048 4.048 9 C -0.049 4.049 10 C -0.165 4.165 11 C -0.181 4.181 12 C -0.040 4.040 13 C -0.542 4.542 14 H 0.061 0.939 15 C -0.196 4.196 16 N -0.599 5.599 17 Si 0.767 3.233 18 H -0.196 1.196 19 H -0.216 1.216 20 H -0.170 1.170 21 N -0.170 5.170 22 N -0.194 5.194 23 H 0.303 0.697 24 H 0.110 0.890 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.131 0.869 28 H 0.137 0.863 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.160 0.840 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.035 0.965 41 H 0.033 0.967 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.171 -25.156 1.792 28.452 hybrid contribution 0.796 1.119 0.445 1.444 sum 13.967 -24.037 2.237 27.890 Atomic orbital electron populations 1.21671 0.93161 1.03440 1.01913 1.20410 0.97199 0.83711 1.06575 1.25222 0.89501 0.98535 0.86004 1.70324 1.28397 1.00043 1.29718 1.24229 0.92531 0.96039 0.92764 1.20120 0.93752 0.86027 0.97873 1.60408 1.44114 1.18788 1.07974 1.21926 0.96658 0.88005 0.98196 1.20354 0.94883 0.94226 0.95420 1.21498 0.96184 0.98379 1.00451 1.21684 1.00672 1.00024 0.95711 1.19587 0.95398 0.93512 0.95494 1.21437 1.14561 1.01757 1.16432 0.93940 1.25944 0.96122 0.97608 0.99914 1.70073 1.31238 1.14116 1.44432 0.85770 0.80724 0.77044 0.79766 1.19561 1.21584 1.17018 1.77906 1.26272 0.95542 1.17327 1.47941 1.37194 1.08130 1.26104 0.69715 0.89033 0.93534 0.93267 0.86895 0.86259 0.88003 0.92053 0.83975 0.94581 0.90600 0.92235 0.95335 0.94012 0.93436 0.94432 0.92344 0.96547 0.96656 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.87 71.98 0.71 -0.87 16 2 C -0.04 -0.33 6.56 29.85 0.20 -0.14 16 3 C 0.29 5.17 7.51 138.23 1.04 6.20 16 4 N -0.56 -14.34 11.16 -179.73 -2.01 -16.34 16 5 C 0.23 6.09 7.65 138.63 1.06 7.15 16 6 C 0.15 3.89 6.31 85.55 0.54 4.43 16 7 N -0.68 -19.48 5.70 -517.92 -2.95 -22.43 16 8 C 0.08 2.53 4.65 86.30 0.40 2.93 16 9 C -0.05 -1.87 0.60 -52.18 -0.03 -1.90 16 10 C -0.11 -4.28 8.06 71.98 0.58 -3.70 16 11 C -0.12 -4.66 7.89 71.98 0.57 -4.09 16 12 C 0.00 -0.10 3.11 29.85 0.09 0.00 16 13 C -0.50 -28.72 8.20 25.60 0.21 -28.51 16 14 H 0.04 2.66 5.92 -2.91 -0.02 2.65 16 15 C 0.00 -0.03 5.47 84.65 0.46 0.44 16 16 N -0.96 -60.96 13.96 21.45 0.30 -60.67 16 17 Si 0.94 45.08 27.47 68.60 1.88 46.97 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 20 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 21 N -0.34 -8.58 12.80 -51.33 -0.66 -9.23 16 22 N -0.47 -8.19 7.45 -50.71 -0.38 -8.57 16 23 H 0.45 4.09 8.96 -213.09 -1.91 2.18 16 24 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.34 9.89 6.76 -89.69 -0.61 9.29 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.06 2.16 7.60 -2.39 -0.02 2.14 16 35 H 0.03 1.28 6.62 -2.39 -0.02 1.26 16 36 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 1.64 6.62 -2.39 -0.02 1.62 16 39 H 0.06 1.90 6.57 -2.39 -0.02 1.88 16 40 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 41 H 0.02 0.70 7.57 -2.38 -0.02 0.68 16 42 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -73.31 336.87 0.47 -72.85 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -1.55 Total: 15.49 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 5.83 Total: -18.07 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -5.69 Total: -117.24 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.97 kcal Total: -73.31 0.47 -72.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392485856.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.809 kcal (2) G-P(sol) polarization free energy of solvation -73.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds