Wall clock time and date at job start Mon Mar 30 2020 00:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47132 * 2 1 4 4 C 1.35317 * 125.86750 * 125.31974 * 3 2 1 5 5 C 1.35349 * 106.17528 * 180.12151 * 4 3 2 6 6 C 1.50697 * 126.75011 * 179.85597 * 5 4 3 7 7 N 1.46905 * 109.47066 * 94.71461 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46923 * 299.99733 * 9 8 7 11 11 C 1.52999 * 109.46998 * 59.99872 * 9 8 7 12 12 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 13 13 C 1.50701 * 109.46820 * 179.97438 * 12 9 8 14 14 H 1.08000 * 120.00070 * 0.02562 * 13 12 9 15 15 C 1.37878 * 120.00019 * 179.97438 * 13 12 9 16 16 N 1.31515 * 120.00228 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00068 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46757 * 60.00769 * 17 15 13 19 19 H 1.48495 * 109.46824 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47105 * 300.00477 * 17 15 13 21 21 N 1.33772 * 106.49378 * 359.59830 * 5 4 3 22 22 N 1.28632 * 108.88726 * 0.25906 * 21 5 4 23 23 H 1.08994 * 109.47237 * 299.99837 * 1 2 3 24 24 H 1.09007 * 109.46875 * 59.99554 * 1 2 3 25 25 H 1.09001 * 109.46695 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47055 * 240.00517 * 2 1 3 27 27 H 1.08997 * 109.47352 * 120.00236 * 2 1 3 28 28 H 1.08004 * 126.91223 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.47558 * 334.71624 * 6 5 4 30 30 H 1.08998 * 109.47216 * 214.71286 * 6 5 4 31 31 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 32 32 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 33 33 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 34 34 H 1.09002 * 109.47301 * 60.00027 * 10 9 8 35 35 H 1.09001 * 109.47017 * 180.02562 * 10 9 8 36 36 H 1.09005 * 109.47249 * 300.00302 * 10 9 8 37 37 H 1.09001 * 109.46999 * 60.00126 * 11 9 8 38 38 H 1.09001 * 109.46478 * 179.97438 * 11 9 8 39 39 H 1.08993 * 109.47197 * 299.99817 * 11 9 8 40 40 H 1.08993 * 109.47740 * 299.99810 * 12 9 8 41 41 H 1.09005 * 109.47573 * 59.99976 * 12 9 8 42 42 H 0.97002 * 120.00555 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8804 1.9174 0.8947 5 6 3.0544 3.2075 0.5242 6 6 3.9239 4.2321 1.2063 7 7 5.2395 4.2702 0.5538 8 6 6.1162 5.2599 1.1941 9 6 7.4737 5.2710 0.4883 10 6 8.1118 3.8840 0.5883 11 6 7.2799 5.6384 -0.9842 12 6 8.3865 6.3022 1.1549 13 6 9.7238 6.3127 0.4601 14 1 9.9044 5.6505 -0.3737 15 6 10.7164 7.1685 0.8883 16 7 10.4964 7.9753 1.9034 17 14 12.3738 7.1821 0.0267 18 1 12.1856 7.5378 -1.4028 19 1 13.2598 8.1828 0.6737 20 1 12.9936 5.8362 0.1245 21 7 2.3073 3.3925 -0.5699 22 7 1.7060 2.2916 -0.8545 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.3358 1.4173 1.7367 29 1 4.0465 3.9640 2.2557 30 1 3.4541 5.2130 1.1344 31 1 5.1479 4.4534 -0.4342 32 1 5.6618 6.2481 1.1225 33 1 6.2539 4.9984 2.2433 34 1 7.4613 3.1497 0.1132 35 1 9.0791 3.8921 0.0859 36 1 8.2498 3.6223 1.6374 37 1 6.8253 6.6265 -1.0553 38 1 8.2470 5.6467 -1.4868 39 1 6.6294 4.9041 -1.4593 40 1 7.9318 7.2901 1.0834 41 1 8.5246 6.0409 2.2041 42 1 11.1948 8.5772 2.2049 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404449905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:42 Heat of formation + Delta-G solvation = 79.289025 kcal Electronic energy + Delta-G solvation = -19963.671021 eV Core-core repulsion = 16980.416985 eV Total energy + Delta-G solvation = -2983.254036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.32365 -37.66722 -35.86645 -34.41188 -32.30156 -31.14182 -30.79449 -27.14730 -26.31639 -26.23405 -24.94860 -24.25040 -22.15441 -21.92282 -20.74731 -17.95700 -17.42369 -16.60273 -16.20404 -15.52907 -15.09260 -14.88744 -14.62540 -14.08691 -14.03315 -13.39269 -13.13512 -12.84875 -12.71712 -12.44803 -12.35312 -11.98023 -11.93341 -11.66978 -11.45499 -10.97516 -10.87112 -10.77542 -10.74166 -10.43622 -10.23279 -10.18103 -10.09917 -9.63215 -9.32978 -8.94979 -8.79332 -8.27618 -8.04869 -5.92416 -3.92284 1.50558 2.16014 2.46524 3.37556 3.41931 3.44410 4.02433 4.30576 4.35600 4.51049 4.60980 4.67990 4.88061 4.97901 5.07415 5.14067 5.40832 5.43284 5.53321 5.64374 5.72975 5.81042 5.94623 6.04966 6.10076 6.31747 6.38761 6.45266 6.57570 6.71404 6.84771 6.88166 7.25787 7.26445 7.30519 7.43242 7.70419 7.75307 7.90579 8.08107 8.44915 8.52793 9.12860 9.70187 11.19224 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.050882 B = 0.003032 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.163182 B = 9231.321868 C = 9343.351502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.296 5.296 4 C -0.034 4.034 5 C -0.011 4.011 6 C 0.142 3.858 7 N -0.683 5.683 8 C 0.070 3.930 9 C -0.058 4.058 10 C -0.115 4.115 11 C -0.130 4.130 12 C 0.034 3.966 13 C -0.506 4.506 14 H 0.058 0.942 15 C 0.054 3.946 16 N -0.898 5.898 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.278 1.278 21 N -0.266 5.266 22 N -0.089 5.089 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.190 0.810 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.344 0.656 32 H 0.026 0.974 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.039 0.961 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.033 0.967 40 H 0.013 0.987 41 H 0.015 0.985 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.189 -16.172 -0.464 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.008 4.008 3 N -0.090 5.090 4 C -0.185 4.185 5 C -0.149 4.149 6 C 0.011 3.989 7 N -0.316 5.316 8 C -0.059 4.059 9 C -0.058 4.058 10 C -0.173 4.173 11 C -0.187 4.187 12 C -0.004 4.004 13 C -0.545 4.545 14 H 0.076 0.924 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.204 1.204 21 N -0.133 5.133 22 N -0.069 5.069 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.207 0.793 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.163 0.837 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.698 -16.260 -1.257 24.811 hybrid contribution 1.202 0.476 0.299 1.327 sum -17.497 -15.783 -0.958 23.583 Atomic orbital electron populations 1.22078 0.92772 1.03623 1.04036 1.22071 0.96828 0.76690 1.05262 1.47431 1.30618 1.11914 1.19042 1.23404 0.99573 0.95549 0.99996 1.21968 1.01655 0.94837 0.96474 1.20099 0.87606 0.94039 0.97132 1.60629 1.10027 1.53037 1.07897 1.22134 0.93432 0.91718 0.98592 1.20620 0.92832 0.97476 0.94865 1.21594 0.99783 0.95440 1.00449 1.21774 1.01348 0.98995 0.96595 1.19124 0.93204 0.92594 0.95461 1.21207 0.97441 1.20328 1.15487 0.92371 1.25013 0.98589 0.95790 0.95210 1.69954 1.33639 1.23887 1.26322 0.86730 0.84246 0.77648 0.79797 1.20364 1.21471 1.20351 1.75064 1.08775 1.16008 1.13451 1.78226 1.21106 0.92907 1.14615 0.91759 0.90669 0.89942 0.88346 0.87669 0.79302 0.89520 0.93645 0.83705 0.95584 0.91398 0.93996 0.92753 0.94185 0.94003 0.91768 0.94807 0.96842 0.96653 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.04 37.16 0.37 -0.40 16 2 C 0.11 0.59 7.18 -4.04 -0.03 0.56 16 3 N -0.30 -2.98 3.44 -61.26 -0.21 -3.19 16 4 C -0.03 -0.35 11.50 -17.04 -0.20 -0.55 16 5 C -0.01 -0.15 6.76 -82.78 -0.56 -0.71 16 6 C 0.14 1.85 6.25 -4.97 -0.03 1.82 16 7 N -0.68 -10.36 5.70 -115.05 -0.66 -11.01 16 8 C 0.07 1.21 4.65 -3.82 -0.02 1.19 16 9 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 10 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 11 C -0.13 -2.52 7.89 37.16 0.29 -2.22 16 12 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 13 C -0.51 -13.96 7.65 -34.44 -0.26 -14.23 16 14 H 0.06 1.56 5.68 -52.49 -0.30 1.27 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 17 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 N -0.27 -4.06 12.41 33.29 0.41 -3.65 16 22 N -0.09 -1.22 12.91 60.35 0.78 -0.44 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 0.47 8.12 -51.92 -0.42 0.05 16 25 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.11 0.26 8.07 -51.93 -0.42 -0.15 16 28 H 0.19 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.34 5.48 6.76 -39.29 -0.27 5.21 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 35 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.34 6.62 -51.93 -0.34 0.99 16 39 H 0.03 0.58 6.57 -51.93 -0.34 0.24 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 340.65 15.07 5.13 5.13 Total: -1.00 -32.64 340.65 -6.30 -38.94 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.04 Total: -0.72 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -0.43 Total: -15.55 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 1.06 Total: -44.57 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.64 -6.30 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404449905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.229 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds