Wall clock time and date at job start Mon Mar 30 2020 00:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47132 * 2 1 4 4 C 1.35317 * 125.86750 * 125.31974 * 3 2 1 5 5 C 1.35349 * 106.17528 * 180.12151 * 4 3 2 6 6 C 1.50697 * 126.75011 * 179.85597 * 5 4 3 7 7 N 1.46905 * 109.47066 * 94.71461 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46923 * 299.99733 * 9 8 7 11 11 C 1.52999 * 109.46998 * 59.99872 * 9 8 7 12 12 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 13 13 C 1.50701 * 109.46820 * 179.97438 * 12 9 8 14 14 H 1.08000 * 120.00070 * 0.02562 * 13 12 9 15 15 C 1.37878 * 120.00019 * 179.97438 * 13 12 9 16 16 N 1.31515 * 120.00228 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00068 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46757 * 60.00769 * 17 15 13 19 19 H 1.48495 * 109.46824 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47105 * 300.00477 * 17 15 13 21 21 N 1.33772 * 106.49378 * 359.59830 * 5 4 3 22 22 N 1.28632 * 108.88726 * 0.25906 * 21 5 4 23 23 H 1.08994 * 109.47237 * 299.99837 * 1 2 3 24 24 H 1.09007 * 109.46875 * 59.99554 * 1 2 3 25 25 H 1.09001 * 109.46695 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47055 * 240.00517 * 2 1 3 27 27 H 1.08997 * 109.47352 * 120.00236 * 2 1 3 28 28 H 1.08004 * 126.91223 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.47558 * 334.71624 * 6 5 4 30 30 H 1.08998 * 109.47216 * 214.71286 * 6 5 4 31 31 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 32 32 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 33 33 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 34 34 H 1.09002 * 109.47301 * 60.00027 * 10 9 8 35 35 H 1.09001 * 109.47017 * 180.02562 * 10 9 8 36 36 H 1.09005 * 109.47249 * 300.00302 * 10 9 8 37 37 H 1.09001 * 109.46999 * 60.00126 * 11 9 8 38 38 H 1.09001 * 109.46478 * 179.97438 * 11 9 8 39 39 H 1.08993 * 109.47197 * 299.99817 * 11 9 8 40 40 H 1.08993 * 109.47740 * 299.99810 * 12 9 8 41 41 H 1.09005 * 109.47573 * 59.99976 * 12 9 8 42 42 H 0.97002 * 120.00555 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8804 1.9174 0.8947 5 6 3.0544 3.2075 0.5242 6 6 3.9239 4.2321 1.2063 7 7 5.2395 4.2702 0.5538 8 6 6.1162 5.2599 1.1941 9 6 7.4737 5.2710 0.4883 10 6 8.1118 3.8840 0.5883 11 6 7.2799 5.6384 -0.9842 12 6 8.3865 6.3022 1.1549 13 6 9.7238 6.3127 0.4601 14 1 9.9044 5.6505 -0.3737 15 6 10.7164 7.1685 0.8883 16 7 10.4964 7.9753 1.9034 17 14 12.3738 7.1821 0.0267 18 1 12.1856 7.5378 -1.4028 19 1 13.2598 8.1828 0.6737 20 1 12.9936 5.8362 0.1245 21 7 2.3073 3.3925 -0.5699 22 7 1.7060 2.2916 -0.8545 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.3358 1.4173 1.7367 29 1 4.0465 3.9640 2.2557 30 1 3.4541 5.2130 1.1344 31 1 5.1479 4.4534 -0.4342 32 1 5.6618 6.2481 1.1225 33 1 6.2539 4.9984 2.2433 34 1 7.4613 3.1497 0.1132 35 1 9.0791 3.8921 0.0859 36 1 8.2498 3.6223 1.6374 37 1 6.8253 6.6265 -1.0553 38 1 8.2470 5.6467 -1.4868 39 1 6.6294 4.9041 -1.4593 40 1 7.9318 7.2901 1.0834 41 1 8.5246 6.0409 2.2041 42 1 11.1948 8.5772 2.2049 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404449905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:41 Heat of formation + Delta-G solvation = 57.357824 kcal Electronic energy + Delta-G solvation = -19964.622029 eV Core-core repulsion = 16980.416985 eV Total energy + Delta-G solvation = -2984.205045 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.17828 -39.18713 -36.70773 -35.67262 -34.24931 -32.05983 -31.60400 -29.04793 -27.88136 -27.60034 -25.85912 -25.49931 -23.85366 -22.76370 -21.56677 -19.53822 -18.30337 -18.18842 -17.37575 -16.79702 -16.55500 -15.93271 -15.67789 -15.44299 -15.10839 -14.69921 -14.40286 -14.19340 -13.86538 -13.61783 -13.50297 -13.29991 -13.03999 -12.74242 -12.70398 -12.54668 -12.40270 -12.31523 -12.20971 -12.11886 -11.90041 -11.69705 -11.34726 -11.00672 -10.84017 -10.74921 -10.47348 -10.17290 -9.29304 -8.11532 -6.18124 0.70273 1.42075 1.44246 1.48254 1.51562 1.56571 2.45634 3.22190 3.28521 3.58235 3.70339 3.98168 3.99918 4.18198 4.21347 4.27976 4.32181 4.40434 4.51116 4.63314 4.76646 4.78463 4.82127 4.85881 4.99482 5.04533 5.10244 5.14698 5.22988 5.24339 5.26995 5.54261 5.56333 5.61462 5.67820 5.76033 5.90116 5.95559 6.08073 6.39688 6.43521 6.96627 7.48739 7.55224 9.00506 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.050882 B = 0.003032 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.163182 B = 9231.321868 C = 9343.351502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.286 5.286 4 C -0.017 4.017 5 C -0.035 4.035 6 C 0.147 3.853 7 N -0.676 5.676 8 C 0.082 3.918 9 C -0.054 4.054 10 C -0.105 4.105 11 C -0.123 4.123 12 C 0.040 3.960 13 C -0.514 4.514 14 H 0.064 0.936 15 C -0.004 4.004 16 N -0.937 5.937 17 Si 0.955 3.045 18 H -0.270 1.270 19 H -0.288 1.288 20 H -0.268 1.268 21 N -0.308 5.308 22 N -0.118 5.118 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.142 0.858 28 H 0.229 0.771 29 H 0.108 0.892 30 H 0.036 0.964 31 H 0.339 0.661 32 H 0.017 0.983 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.034 0.966 38 H 0.047 0.953 39 H 0.059 0.941 40 H -0.016 1.016 41 H -0.010 1.010 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.417 -18.763 -0.513 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.081 5.081 4 C -0.169 4.169 5 C -0.174 4.174 6 C 0.016 3.984 7 N -0.308 5.308 8 C -0.047 4.047 9 C -0.055 4.055 10 C -0.162 4.162 11 C -0.180 4.180 12 C 0.002 3.998 13 C -0.552 4.552 14 H 0.082 0.918 15 C -0.201 4.201 16 N -0.578 5.578 17 Si 0.780 3.220 18 H -0.195 1.195 19 H -0.213 1.213 20 H -0.193 1.193 21 N -0.174 5.174 22 N -0.097 5.097 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.160 0.840 28 H 0.245 0.755 29 H 0.126 0.874 30 H 0.055 0.945 31 H 0.158 0.842 32 H 0.036 0.964 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.002 0.998 41 H 0.008 0.992 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.957 -18.881 -1.332 26.789 hybrid contribution 1.192 1.203 0.351 1.729 sum -17.766 -17.678 -0.981 25.082 Atomic orbital electron populations 1.22061 0.92507 1.04976 1.02552 1.22586 0.97114 0.74481 1.07618 1.47860 1.29543 1.12858 1.17803 1.23951 0.98268 0.94600 1.00121 1.22056 1.02427 0.96171 0.96792 1.20111 0.86256 0.94018 0.98021 1.60598 1.11128 1.51543 1.07546 1.21862 0.92280 0.92115 0.98471 1.20483 0.93497 0.96324 0.95148 1.21482 0.99197 0.95249 1.00302 1.21689 1.00887 0.99512 0.95957 1.19007 0.93699 0.92690 0.94385 1.21589 0.98315 1.19932 1.15412 0.91792 1.25900 1.02624 0.95567 0.95972 1.70095 1.34890 1.24853 1.27990 0.85656 0.79561 0.77983 0.78788 1.19528 1.21322 1.19269 1.75001 1.10098 1.17369 1.14955 1.78143 1.22078 0.93423 1.16088 0.92486 0.92874 0.87142 0.87272 0.84032 0.75458 0.87394 0.94538 0.84227 0.96426 0.91098 0.91739 0.94489 0.94418 0.94646 0.93439 0.92178 0.99800 0.99180 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 10.04 71.98 0.72 -0.44 16 2 C 0.10 0.73 7.18 86.38 0.62 1.35 16 3 N -0.29 -5.11 3.44 -347.72 -1.20 -6.31 16 4 C -0.02 -0.30 11.50 83.49 0.96 0.66 16 5 C -0.04 -0.87 6.76 41.59 0.28 -0.59 16 6 C 0.15 3.58 6.25 85.55 0.53 4.12 16 7 N -0.68 -19.40 5.70 -517.92 -2.95 -22.35 16 8 C 0.08 2.78 4.65 86.30 0.40 3.18 16 9 C -0.05 -2.17 0.60 -52.18 -0.03 -2.20 16 10 C -0.11 -3.97 8.06 71.98 0.58 -3.39 16 11 C -0.12 -4.71 7.89 71.98 0.57 -4.14 16 12 C 0.04 2.07 4.04 29.85 0.12 2.19 16 13 C -0.51 -28.69 7.65 25.60 0.20 -28.50 16 14 H 0.06 3.43 5.68 -2.91 -0.02 3.42 16 15 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 16 N -0.94 -57.51 13.29 21.45 0.28 -57.23 16 17 Si 0.95 44.82 29.54 68.60 2.03 46.84 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 N -0.31 -9.30 12.41 -48.60 -0.60 -9.91 16 22 N -0.12 -3.15 12.91 37.02 0.48 -2.67 16 23 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.05 0.63 8.12 -2.38 -0.02 0.61 16 25 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.14 0.04 8.07 -2.39 -0.02 0.02 16 28 H 0.23 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.34 10.32 6.76 -89.69 -0.61 9.72 16 32 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.06 2.14 7.60 -2.39 -0.02 2.12 16 35 H 0.04 1.50 6.62 -2.39 -0.02 1.49 16 36 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 38 H 0.05 1.95 6.62 -2.39 -0.02 1.94 16 39 H 0.06 1.97 6.57 -2.39 -0.02 1.96 16 40 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H -0.01 -0.58 8.14 -2.38 -0.02 -0.59 16 42 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -72.49 340.65 3.84 -68.65 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.39 Total: 10.49 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 5.42 Total: -27.52 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -3.99 Total: -98.46 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -72.49 3.84 -68.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404449905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.011 kcal (2) G-P(sol) polarization free energy of solvation -72.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds