Wall clock time and date at job start Mon Mar 30 2020 00:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00145 * 2 1 4 4 H 1.48501 * 109.47143 * 89.99812 * 3 2 1 5 5 H 1.48501 * 109.47280 * 209.99881 * 3 2 1 6 6 H 1.48499 * 109.47119 * 330.00385 * 3 2 1 7 7 C 1.37880 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00165 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47310 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47463 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00302 * 179.97438 * 11 10 9 13 13 H 1.09004 * 110.01447 * 49.70065 * 12 11 10 14 14 C 1.54262 * 110.03473 * 288.31062 * 12 11 10 15 15 C 1.54886 * 104.19772 * 217.10624 * 14 12 11 16 16 C 1.54890 * 102.74877 * 37.93816 * 15 14 12 17 17 C 1.53874 * 110.03242 * 171.09078 * 12 11 10 18 18 H 1.09003 * 110.03453 * 238.56920 * 17 12 11 19 19 C 1.52998 * 110.03362 * 0.02562 * 17 12 11 20 20 H 1.09003 * 109.46043 * 306.18035 * 19 17 12 21 21 C 1.53036 * 109.46446 * 186.20234 * 19 17 12 22 22 C 1.53121 * 109.27770 * 180.80294 * 21 19 17 23 23 C 1.53119 * 109.16058 * 57.65480 * 22 21 19 24 24 C 1.53035 * 109.27757 * 302.34421 * 23 22 21 25 25 N 1.46844 * 109.51625 * 59.18457 * 24 23 22 26 26 H 0.97001 * 120.00587 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47145 * 300.00031 * 9 7 2 28 28 H 1.09001 * 109.47107 * 59.99635 * 9 7 2 29 29 H 1.09008 * 109.47164 * 300.00214 * 10 9 7 30 30 H 1.08996 * 109.47128 * 59.99512 * 10 9 7 31 31 H 1.00909 * 110.99757 * 303.95660 * 11 10 9 32 32 H 1.09006 * 110.48131 * 335.78395 * 14 12 11 33 33 H 1.08999 * 110.48702 * 98.29080 * 14 12 11 34 34 H 1.08999 * 110.75276 * 156.25751 * 15 14 12 35 35 H 1.09004 * 110.75397 * 279.43976 * 15 14 12 36 36 H 1.09003 * 110.47980 * 80.73730 * 16 15 14 37 37 H 1.08998 * 110.48943 * 203.24646 * 16 15 14 38 38 H 1.08998 * 109.50167 * 300.74666 * 21 19 17 39 39 H 1.09004 * 109.50625 * 60.85992 * 21 19 17 40 40 H 1.09010 * 109.51912 * 177.55722 * 22 21 19 41 41 H 1.08995 * 109.52165 * 297.68475 * 22 21 19 42 42 H 1.09001 * 109.50272 * 62.28582 * 23 22 21 43 43 H 1.09003 * 109.50344 * 182.36063 * 23 22 21 44 44 H 1.08998 * 109.46070 * 179.19570 * 24 23 22 45 45 H 1.09001 * 109.46144 * 299.17278 * 24 23 22 46 46 H 1.00901 * 110.99338 * 174.14836 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5107 -4.9343 -0.0001 12 6 2.4351 -6.0759 -0.0007 13 1 3.1848 -5.9494 0.7805 14 6 3.1215 -6.1994 -1.3767 15 6 3.2300 -7.7265 -1.6114 16 6 1.8973 -8.2576 -1.0276 17 6 1.6569 -7.3845 0.2225 18 1 2.0294 -7.8935 1.1115 19 6 0.1639 -7.0869 0.3746 20 1 0.0198 -6.3434 1.1587 21 6 -0.5768 -8.3727 0.7489 22 6 -2.0729 -8.0743 0.8803 23 6 -2.5867 -7.4903 -0.4386 24 6 -1.7877 -6.2300 -0.7784 25 7 -0.3635 -6.5685 -0.8940 26 1 -0.4851 -0.8400 -0.0004 27 1 0.6240 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 2.8719 -3.6044 -0.8895 30 1 2.8718 -3.6043 0.8904 31 1 0.8739 -4.9846 0.7811 32 1 2.5095 -5.7369 -2.1511 33 1 4.1115 -5.7440 -1.3515 34 1 3.3016 -7.9495 -2.6760 35 1 4.0829 -8.1404 -1.0734 36 1 1.0876 -8.1275 -1.7457 37 1 1.9940 -9.3070 -0.7491 38 1 -0.4219 -9.1212 -0.0282 39 1 -0.1960 -8.7489 1.6984 40 1 -2.6099 -8.9961 1.1043 41 1 -2.2317 -7.3557 1.6844 42 1 -2.4634 -8.2249 -1.2343 43 1 -3.6420 -7.2367 -0.3377 44 1 -2.1415 -5.8198 -1.7242 45 1 -1.9224 -5.4908 0.0112 46 1 0.1722 -5.7742 -1.2107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423033253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:17 Heat of formation + Delta-G solvation = -23.553518 kcal Electronic energy + Delta-G solvation = -21675.236308 eV Core-core repulsion = 18791.063028 eV Total energy + Delta-G solvation = -2884.173280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.92835 -37.12922 -34.89713 -32.91730 -31.88514 -31.42575 -29.27463 -27.41536 -26.19970 -23.73335 -23.17610 -22.55317 -21.30083 -20.34896 -19.48618 -18.63369 -16.77099 -16.25326 -15.65692 -15.32448 -14.77597 -14.57222 -14.03525 -13.96356 -13.72676 -13.50222 -13.13718 -12.89955 -12.80446 -12.30426 -11.98170 -11.97043 -11.43965 -11.13865 -11.06684 -10.91348 -10.85216 -10.74164 -10.65364 -10.59172 -10.45809 -10.22239 -10.14925 -10.12165 -9.88255 -9.70862 -8.59303 -8.34284 -8.25071 -7.74099 -6.37001 -4.06014 3.42758 3.46633 3.62411 4.42159 4.50572 4.61530 4.64596 4.84935 4.92322 4.98420 5.05146 5.22929 5.35062 5.40956 5.46314 5.56314 5.60912 5.65823 5.70301 5.72776 5.79270 5.88347 5.96370 5.99839 6.02771 6.06223 6.08854 6.16167 6.18560 6.21494 6.26444 6.32171 6.35821 6.45695 6.51198 6.66622 6.80791 7.22434 7.43913 7.45417 7.64405 7.76456 8.06044 8.23429 8.45756 8.87969 9.66379 11.04051 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.020279 B = 0.004955 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.405313 B = 5650.070684 C = 6661.629748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 1.071 2.929 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.602 4.602 8 H 0.048 0.952 9 C 0.014 3.986 10 C 0.071 3.929 11 N -0.687 5.687 12 C 0.082 3.918 13 H 0.035 0.965 14 C -0.111 4.111 15 C -0.124 4.124 16 C -0.110 4.110 17 C -0.085 4.085 18 H 0.068 0.932 19 C 0.105 3.895 20 H 0.032 0.968 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.116 4.116 24 C 0.058 3.942 25 N -0.683 5.683 26 H 0.269 0.731 27 H 0.001 0.999 28 H 0.015 0.985 29 H 0.063 0.937 30 H 0.017 0.983 31 H 0.334 0.666 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.027 0.973 46 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.389 -18.464 -0.200 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.641 4.641 8 H 0.066 0.934 9 C -0.024 4.024 10 C -0.057 4.057 11 N -0.320 5.320 12 C -0.028 4.028 13 H 0.053 0.947 14 C -0.149 4.149 15 C -0.162 4.162 16 C -0.148 4.148 17 C -0.105 4.105 18 H 0.086 0.914 19 C -0.006 4.006 20 H 0.050 0.950 21 C -0.150 4.150 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.072 4.072 25 N -0.325 5.325 26 H 0.080 0.920 27 H 0.019 0.981 28 H 0.033 0.967 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.155 0.845 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.020 -17.390 -1.149 17.428 hybrid contribution 0.622 -0.760 1.637 1.909 sum 0.642 -18.150 0.488 18.168 Atomic orbital electron populations 1.70743 1.06881 1.30659 1.46589 1.25830 0.96540 1.02680 0.93760 0.83510 0.74684 0.75118 0.76693 1.21535 1.21486 1.20952 1.22008 0.94243 0.91973 1.55893 0.93410 1.19185 0.94622 0.92406 0.96154 1.22035 0.96703 0.87895 0.99079 1.60818 1.19913 1.02536 1.48778 1.22185 0.93324 0.90395 0.96901 0.94704 1.22385 0.99720 0.95718 0.97099 1.22445 0.97580 0.95805 1.00363 1.22366 0.97950 0.97147 0.97295 1.21960 0.94405 0.95435 0.98659 0.91399 1.21190 0.92813 0.95088 0.91511 0.95013 1.21652 0.94783 0.97871 1.00719 1.21557 0.96150 1.00299 0.97768 1.21585 0.98392 0.98029 0.97386 1.21811 0.89642 0.95427 1.00298 1.60548 1.02711 1.41405 1.27854 0.92048 0.98062 0.96651 0.91874 0.96483 0.84547 0.90262 0.92514 0.91858 0.92417 0.88943 0.92910 0.91275 0.92534 0.92475 0.92542 0.91600 0.92358 0.91292 0.95488 0.79818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.18 13.65 55.43 0.76 -27.42 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 3 Si 1.07 25.56 29.90 -169.99 -5.08 20.48 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.60 -17.29 9.11 -34.44 -0.31 -17.60 16 8 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 9 C 0.01 0.35 4.54 -27.88 -0.13 0.22 16 10 C 0.07 1.47 5.44 -3.83 -0.02 1.45 16 11 N -0.69 -11.54 3.29 -105.55 -0.35 -11.89 16 12 C 0.08 1.18 3.00 -66.60 -0.20 0.98 16 13 H 0.03 0.52 8.08 -51.93 -0.42 0.11 16 14 C -0.11 -1.52 5.66 -25.08 -0.14 -1.66 16 15 C -0.12 -1.41 6.91 -24.74 -0.17 -1.58 16 16 C -0.11 -1.25 5.47 -25.02 -0.14 -1.39 16 17 C -0.09 -1.05 2.76 -89.45 -0.25 -1.30 16 18 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 19 C 0.10 1.34 1.58 -67.72 -0.11 1.23 16 20 H 0.03 0.46 6.26 -51.93 -0.33 0.13 16 21 C -0.11 -1.25 5.25 -26.65 -0.14 -1.39 16 22 C -0.12 -1.30 6.00 -26.61 -0.16 -1.46 16 23 C -0.12 -1.31 6.09 -26.65 -0.16 -1.48 16 24 C 0.06 0.78 6.55 -3.84 -0.03 0.76 16 25 N -0.68 -9.44 5.07 -106.76 -0.54 -9.98 16 26 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 27 H 0.00 0.03 8.01 -51.93 -0.42 -0.39 16 28 H 0.02 0.41 8.01 -51.93 -0.42 0.00 16 29 H 0.06 1.33 7.52 -51.92 -0.39 0.94 16 30 H 0.02 0.36 8.13 -51.93 -0.42 -0.06 16 31 H 0.33 5.70 6.20 -39.29 -0.24 5.45 16 32 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.17 6.78 -51.93 -0.35 0.82 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.77 7.54 -51.93 -0.39 0.38 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.37 5.89 6.05 -39.29 -0.24 5.65 16 LS Contribution 340.36 15.07 5.13 5.13 Total: -1.00 -28.97 340.36 -10.74 -39.71 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -8.60 Total: 6.82 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -2.05 Total: -22.85 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.13 Total: -49.29 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.48 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.97 -10.74 -39.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423033253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.157 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds