Wall clock time and date at job start Mon Mar 30 2020 00:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00145 * 2 1 4 4 H 1.48501 * 109.47143 * 89.99812 * 3 2 1 5 5 H 1.48501 * 109.47280 * 209.99881 * 3 2 1 6 6 H 1.48499 * 109.47119 * 330.00385 * 3 2 1 7 7 C 1.37880 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00165 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47310 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47463 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00302 * 179.97438 * 11 10 9 13 13 H 1.09004 * 110.01447 * 49.70065 * 12 11 10 14 14 C 1.54262 * 110.03473 * 288.31062 * 12 11 10 15 15 C 1.54886 * 104.19772 * 217.10624 * 14 12 11 16 16 C 1.54890 * 102.74877 * 37.93816 * 15 14 12 17 17 C 1.53874 * 110.03242 * 171.09078 * 12 11 10 18 18 H 1.09003 * 110.03453 * 238.56920 * 17 12 11 19 19 C 1.52998 * 110.03362 * 0.02562 * 17 12 11 20 20 H 1.09003 * 109.46043 * 306.18035 * 19 17 12 21 21 C 1.53036 * 109.46446 * 186.20234 * 19 17 12 22 22 C 1.53121 * 109.27770 * 180.80294 * 21 19 17 23 23 C 1.53119 * 109.16058 * 57.65480 * 22 21 19 24 24 C 1.53035 * 109.27757 * 302.34421 * 23 22 21 25 25 N 1.46844 * 109.51625 * 59.18457 * 24 23 22 26 26 H 0.97001 * 120.00587 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47145 * 300.00031 * 9 7 2 28 28 H 1.09001 * 109.47107 * 59.99635 * 9 7 2 29 29 H 1.09008 * 109.47164 * 300.00214 * 10 9 7 30 30 H 1.08996 * 109.47128 * 59.99512 * 10 9 7 31 31 H 1.00909 * 110.99757 * 303.95660 * 11 10 9 32 32 H 1.09006 * 110.48131 * 335.78395 * 14 12 11 33 33 H 1.08999 * 110.48702 * 98.29080 * 14 12 11 34 34 H 1.08999 * 110.75276 * 156.25751 * 15 14 12 35 35 H 1.09004 * 110.75397 * 279.43976 * 15 14 12 36 36 H 1.09003 * 110.47980 * 80.73730 * 16 15 14 37 37 H 1.08998 * 110.48943 * 203.24646 * 16 15 14 38 38 H 1.08998 * 109.50167 * 300.74666 * 21 19 17 39 39 H 1.09004 * 109.50625 * 60.85992 * 21 19 17 40 40 H 1.09010 * 109.51912 * 177.55722 * 22 21 19 41 41 H 1.08995 * 109.52165 * 297.68475 * 22 21 19 42 42 H 1.09001 * 109.50272 * 62.28582 * 23 22 21 43 43 H 1.09003 * 109.50344 * 182.36063 * 23 22 21 44 44 H 1.08998 * 109.46070 * 179.19570 * 24 23 22 45 45 H 1.09001 * 109.46144 * 299.17278 * 24 23 22 46 46 H 1.00901 * 110.99338 * 174.14836 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5107 -4.9343 -0.0001 12 6 2.4351 -6.0759 -0.0007 13 1 3.1848 -5.9494 0.7805 14 6 3.1215 -6.1994 -1.3767 15 6 3.2300 -7.7265 -1.6114 16 6 1.8973 -8.2576 -1.0276 17 6 1.6569 -7.3845 0.2225 18 1 2.0294 -7.8935 1.1115 19 6 0.1639 -7.0869 0.3746 20 1 0.0198 -6.3434 1.1587 21 6 -0.5768 -8.3727 0.7489 22 6 -2.0729 -8.0743 0.8803 23 6 -2.5867 -7.4903 -0.4386 24 6 -1.7877 -6.2300 -0.7784 25 7 -0.3635 -6.5685 -0.8940 26 1 -0.4851 -0.8400 -0.0004 27 1 0.6240 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 2.8719 -3.6044 -0.8895 30 1 2.8718 -3.6043 0.8904 31 1 0.8739 -4.9846 0.7811 32 1 2.5095 -5.7369 -2.1511 33 1 4.1115 -5.7440 -1.3515 34 1 3.3016 -7.9495 -2.6760 35 1 4.0829 -8.1404 -1.0734 36 1 1.0876 -8.1275 -1.7457 37 1 1.9940 -9.3070 -0.7491 38 1 -0.4219 -9.1212 -0.0282 39 1 -0.1960 -8.7489 1.6984 40 1 -2.6099 -8.9961 1.1043 41 1 -2.2317 -7.3557 1.6844 42 1 -2.4634 -8.2249 -1.2343 43 1 -3.6420 -7.2367 -0.3377 44 1 -2.1415 -5.8198 -1.7242 45 1 -1.9224 -5.4908 0.0112 46 1 0.1722 -5.7742 -1.2107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000423033253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:16 Heat of formation + Delta-G solvation = -39.698632 kcal Electronic energy + Delta-G solvation = -21675.936413 eV Core-core repulsion = 18791.063028 eV Total energy + Delta-G solvation = -2884.873385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.02166 -38.23494 -36.59008 -34.80738 -32.91623 -32.44418 -31.04512 -28.42276 -27.64956 -25.54343 -24.36425 -23.59427 -22.95259 -21.55966 -20.55768 -19.72264 -18.87608 -17.46191 -16.81611 -16.61696 -15.94682 -15.74182 -15.65549 -15.35701 -15.04912 -14.79787 -14.62676 -14.17345 -13.89389 -13.75790 -13.56747 -13.19458 -12.88774 -12.67562 -12.37446 -12.18883 -12.05462 -11.97901 -11.90073 -11.77633 -11.72969 -11.58316 -11.47604 -11.37812 -11.11724 -10.94909 -10.74385 -10.57991 -9.59431 -8.98052 -8.72772 -6.43362 1.50191 1.59607 1.77558 2.53478 3.12902 3.15308 3.44396 3.61230 3.79690 3.90042 4.03444 4.09960 4.23934 4.31213 4.33837 4.41340 4.46170 4.53256 4.57420 4.63756 4.70893 4.76006 4.81526 4.86748 4.89071 4.97542 5.01130 5.08704 5.12955 5.14085 5.17816 5.23547 5.25753 5.31216 5.36293 5.39559 5.39973 5.53211 5.71900 5.87130 6.10193 6.15046 6.30551 6.39259 6.54944 6.80257 7.39111 8.68235 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.020279 B = 0.004955 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.405313 B = 5650.070684 C = 6661.629748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.037 4.037 3 Si 1.121 2.879 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.282 1.282 7 C -0.620 4.620 8 H 0.050 0.950 9 C 0.021 3.979 10 C 0.091 3.909 11 N -0.681 5.681 12 C 0.079 3.921 13 H 0.032 0.968 14 C -0.112 4.112 15 C -0.115 4.115 16 C -0.103 4.103 17 C -0.080 4.080 18 H 0.084 0.916 19 C 0.103 3.897 20 H 0.012 0.988 21 C -0.107 4.107 22 C -0.120 4.120 23 C -0.110 4.110 24 C 0.055 3.945 25 N -0.682 5.682 26 H 0.255 0.745 27 H -0.018 1.018 28 H -0.008 1.008 29 H 0.060 0.940 30 H 0.013 0.987 31 H 0.333 0.667 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.005 0.995 46 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 -20.105 0.001 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.235 4.235 3 Si 0.942 3.058 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.207 1.207 7 C -0.658 4.658 8 H 0.068 0.932 9 C -0.017 4.017 10 C -0.038 4.038 11 N -0.314 5.314 12 C -0.031 4.031 13 H 0.050 0.950 14 C -0.150 4.150 15 C -0.153 4.153 16 C -0.140 4.140 17 C -0.099 4.099 18 H 0.102 0.898 19 C -0.007 4.007 20 H 0.029 0.971 21 C -0.145 4.145 22 C -0.157 4.157 23 C -0.148 4.148 24 C -0.075 4.075 25 N -0.321 5.321 26 H 0.064 0.936 27 H 0.000 1.000 28 H 0.010 0.990 29 H 0.079 0.921 30 H 0.031 0.969 31 H 0.153 0.847 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.023 0.977 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.136 -19.081 -0.942 19.138 hybrid contribution 0.250 -0.276 1.568 1.611 sum 1.386 -19.357 0.626 19.417 Atomic orbital electron populations 1.70883 1.07967 1.29842 1.48623 1.27457 0.96575 1.06874 0.92575 0.82889 0.74187 0.70903 0.77812 1.19766 1.19327 1.20717 1.22440 0.94638 0.93372 1.55384 0.93191 1.19049 0.94855 0.93803 0.93982 1.21633 0.95272 0.88182 0.98690 1.60771 1.20021 1.01823 1.48782 1.22333 0.93101 0.90272 0.97360 0.94953 1.22372 0.98989 0.97748 0.95921 1.22416 0.98102 0.93533 1.01257 1.22304 0.97456 0.98040 0.96249 1.21963 0.93551 0.94353 0.99991 0.89783 1.21249 0.93627 0.95559 0.90286 0.97053 1.21626 0.94620 0.96680 1.01563 1.21570 0.96311 1.00907 0.96957 1.21541 0.98486 0.96776 0.97954 1.21865 0.90061 0.96315 0.99281 1.60616 1.02604 1.40431 1.28456 0.93594 1.00019 0.98960 0.92105 0.96875 0.84704 0.92205 0.92755 0.90951 0.90924 0.90226 0.90774 0.90645 0.91128 0.90451 0.93467 0.91068 0.91422 0.91850 0.97711 0.81439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.19 13.65 21.45 0.29 -58.89 16 2 C -0.04 -2.20 5.46 84.66 0.46 -1.74 16 3 Si 1.12 51.02 29.90 68.60 2.05 53.07 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.62 -36.20 9.11 25.60 0.23 -35.96 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 9 C 0.02 1.10 4.54 29.85 0.14 1.23 16 10 C 0.09 3.88 5.44 86.30 0.47 4.35 16 11 N -0.68 -23.44 3.29 -487.85 -1.61 -25.05 16 12 C 0.08 2.21 3.00 45.64 0.14 2.35 16 13 H 0.03 0.94 8.08 -2.39 -0.02 0.92 16 14 C -0.11 -2.97 5.66 31.67 0.18 -2.79 16 15 C -0.12 -2.33 6.91 31.88 0.22 -2.11 16 16 C -0.10 -2.08 5.47 31.71 0.17 -1.91 16 17 C -0.08 -1.81 2.76 -10.03 -0.03 -1.84 16 18 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 19 C 0.10 2.56 1.58 44.94 0.07 2.63 16 20 H 0.01 0.34 6.26 -2.39 -0.01 0.32 16 21 C -0.11 -2.14 5.25 30.65 0.16 -1.98 16 22 C -0.12 -2.39 6.00 30.67 0.18 -2.21 16 23 C -0.11 -2.38 6.09 30.65 0.19 -2.19 16 24 C 0.05 1.51 6.55 86.33 0.57 2.08 16 25 N -0.68 -18.95 5.07 -491.69 -2.49 -21.44 16 26 H 0.25 16.39 7.22 -92.71 -0.67 15.72 16 27 H -0.02 -1.05 8.01 -2.39 -0.02 -1.07 16 28 H -0.01 -0.46 8.01 -2.39 -0.02 -0.48 16 29 H 0.06 2.61 7.52 -2.38 -0.02 2.59 16 30 H 0.01 0.56 8.13 -2.39 -0.02 0.54 16 31 H 0.33 11.76 6.20 -89.69 -0.56 11.20 16 32 H 0.06 1.82 8.05 -2.38 -0.02 1.80 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.08 1.86 6.78 -2.39 -0.02 1.85 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.45 7.54 -2.39 -0.02 1.43 16 39 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 44 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.36 11.71 6.05 -89.69 -0.54 11.17 16 Total: -1.00 -63.29 340.36 1.33 -61.96 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -0.07 Total: 30.46 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 3.15 Total: -40.11 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -3.81 Total: -105.38 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.07 kcal Total: -63.29 1.33 -61.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423033253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.257 kcal (2) G-P(sol) polarization free energy of solvation -63.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds