Wall clock time and date at job start Mon Mar 30 2020 00:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00047 * 2 1 4 4 H 1.48508 * 109.46906 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47271 * 299.99943 * 3 2 1 6 6 H 1.48497 * 109.47061 * 60.00250 * 3 2 1 7 7 C 1.37878 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99864 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47111 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47093 * 179.97438 * 10 9 7 12 12 C 1.46900 * 110.99996 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.01607 * 34.94432 * 12 11 10 14 14 C 1.53869 * 110.03244 * 273.54583 * 12 11 10 15 15 C 1.54270 * 106.63967 * 240.69040 * 14 12 11 16 16 C 1.54961 * 104.16191 * 336.44607 * 15 14 12 17 17 C 1.54268 * 110.03156 * 156.37640 * 12 11 10 18 18 H 1.09001 * 110.48482 * 24.21949 * 17 12 11 19 19 C 1.52998 * 110.48927 * 261.70503 * 17 12 11 20 20 H 1.08998 * 109.46379 * 299.99881 * 19 17 12 21 21 C 1.53041 * 109.46410 * 180.02562 * 19 17 12 22 22 C 1.53113 * 109.28033 * 180.79663 * 21 19 17 23 23 C 1.53120 * 109.15286 * 57.66994 * 22 21 19 24 24 C 1.53040 * 109.27973 * 302.34122 * 23 22 21 25 25 N 1.46847 * 109.46050 * 59.98339 * 19 17 12 26 26 H 0.96999 * 120.00125 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47613 * 59.99404 * 9 7 2 28 28 H 1.08999 * 109.46917 * 299.99533 * 9 7 2 29 29 H 1.09004 * 109.47013 * 60.00270 * 10 9 7 30 30 H 1.08999 * 109.47336 * 299.99873 * 10 9 7 31 31 H 1.00901 * 111.00168 * 303.95250 * 11 10 9 32 32 H 1.09002 * 110.03268 * 0.02562 * 14 12 11 33 33 H 1.08995 * 110.03391 * 121.38432 * 14 12 11 34 34 H 1.08997 * 110.48585 * 95.09409 * 15 14 12 35 35 H 1.09002 * 110.48442 * 217.73292 * 15 14 12 36 36 H 1.09001 * 110.71970 * 279.57802 * 16 15 14 37 37 H 1.08998 * 110.76825 * 156.22170 * 16 15 14 38 38 H 1.09006 * 109.50113 * 300.74659 * 21 19 17 39 39 H 1.08999 * 109.50298 * 60.86420 * 21 19 17 40 40 H 1.09007 * 109.52885 * 297.76416 * 22 21 19 41 41 H 1.09003 * 109.57814 * 177.60121 * 22 21 19 42 42 H 1.09000 * 109.50204 * 182.40035 * 23 22 21 43 43 H 1.08999 * 109.50587 * 62.28085 * 23 22 21 44 44 H 1.09008 * 109.45925 * 299.16587 * 24 23 22 45 45 H 1.08997 * 109.45515 * 179.19399 * 24 23 22 46 46 H 1.00900 * 111.00026 * 305.84936 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0759 0.0018 13 1 3.3223 -5.8372 0.5883 14 6 2.8363 -6.4300 -1.4408 15 6 2.3677 -7.8791 -1.6867 16 6 2.2815 -8.4956 -0.2676 17 6 1.7356 -7.3219 0.5832 18 1 0.6545 -7.2398 0.4707 19 6 2.1071 -7.5063 2.0559 20 1 3.1861 -7.6318 2.1453 21 6 1.4020 -8.7473 2.6081 22 6 1.7608 -8.9166 4.0870 23 6 1.3570 -7.6518 4.8498 24 6 2.0631 -6.4424 4.2327 25 7 1.6871 -6.3236 2.8182 26 1 -0.4850 0.8400 0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8718 -3.6044 0.8906 30 1 2.8718 -3.6044 -0.8894 31 1 0.8745 -4.9841 0.7828 32 1 2.3455 -5.7545 -2.1414 33 1 3.9183 -6.3632 -1.5546 34 1 1.3888 -7.8873 -2.1661 35 1 3.0953 -8.4175 -2.2939 36 1 3.2684 -8.7994 0.0815 37 1 1.5894 -9.3376 -0.2534 38 1 0.3233 -8.6284 2.5065 39 1 1.7257 -9.6273 2.0523 40 1 2.8349 -9.0742 4.1856 41 1 1.2277 -9.7747 4.4963 42 1 1.6486 -7.7489 5.8956 43 1 0.2776 -7.5159 4.7835 44 1 3.1425 -6.5727 4.3118 45 1 1.7665 -5.5384 4.7646 46 1 2.0643 -5.4798 2.4134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423033254.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:19 Heat of formation + Delta-G solvation = -34.244836 kcal Electronic energy + Delta-G solvation = -21193.247379 eV Core-core repulsion = 18308.610488 eV Total energy + Delta-G solvation = -2884.636891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.74323 -37.40703 -34.72446 -32.68680 -32.21350 -31.54374 -29.40570 -27.58690 -26.33496 -23.92436 -23.45831 -22.47607 -20.89592 -19.90755 -19.64789 -19.29598 -16.92512 -16.30018 -15.64970 -15.05914 -14.81314 -14.40068 -14.21859 -13.96985 -13.79286 -13.58210 -13.19271 -13.07430 -12.86752 -12.60587 -12.25469 -11.54835 -11.46906 -11.30717 -11.18300 -10.95114 -10.94979 -10.91745 -10.76070 -10.64468 -10.48460 -10.42107 -10.29005 -10.03786 -9.91915 -9.29056 -9.07423 -8.42749 -8.31938 -7.72200 -5.96221 -3.98541 3.32870 3.40214 3.44072 4.06021 4.46064 4.53675 4.62356 4.78073 4.78745 4.90792 4.98302 5.13845 5.14643 5.31547 5.39738 5.41318 5.45803 5.55660 5.57923 5.67632 5.72433 5.75665 5.81564 5.83597 5.85111 5.94427 6.02516 6.04213 6.07576 6.19236 6.25749 6.35762 6.40538 6.42096 6.48729 6.59853 7.04739 7.08111 7.36647 7.60247 7.80497 7.90220 8.07889 8.16158 8.48506 9.09207 9.65047 11.15179 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.019154 B = 0.004524 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.513878 B = 6187.210585 C = 7277.993925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.685 5.685 12 C 0.087 3.913 13 H 0.033 0.967 14 C -0.116 4.116 15 C -0.120 4.120 16 C -0.114 4.114 17 C -0.089 4.089 18 H 0.092 0.908 19 C 0.096 3.904 20 H 0.033 0.967 21 C -0.110 4.110 22 C -0.121 4.121 23 C -0.117 4.117 24 C 0.058 3.942 25 N -0.686 5.686 26 H 0.259 0.741 27 H 0.025 0.975 28 H 0.014 0.986 29 H 0.010 0.990 30 H 0.056 0.944 31 H 0.343 0.657 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.025 0.975 45 H 0.075 0.925 46 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.633 -19.781 5.170 20.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.061 4.061 11 N -0.318 5.318 12 C -0.023 4.023 13 H 0.051 0.949 14 C -0.155 4.155 15 C -0.157 4.157 16 C -0.153 4.153 17 C -0.108 4.108 18 H 0.110 0.890 19 C -0.014 4.014 20 H 0.051 0.949 21 C -0.148 4.148 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.071 4.071 25 N -0.320 5.320 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.033 0.967 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.163 0.837 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.043 0.957 45 H 0.094 0.906 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.769 -19.878 4.602 20.748 hybrid contribution 1.819 1.272 0.904 2.396 sum 5.588 -18.606 5.505 20.192 Atomic orbital electron populations 1.69984 1.05995 1.26391 1.50796 1.24992 0.94809 0.99129 0.95383 0.86565 0.80072 0.83954 0.77562 1.19834 1.20995 1.21067 1.21219 0.92944 0.91092 1.50637 0.92845 1.19062 0.94008 0.90381 0.97746 1.22169 0.96890 0.88860 0.98222 1.60763 1.19343 1.01555 1.50113 1.22140 0.93945 0.90836 0.95428 0.94938 1.22197 0.99718 0.96347 0.97220 1.22310 1.01202 0.95868 0.96346 1.22479 1.00451 0.97011 0.95318 1.22272 1.01659 0.94666 0.92247 0.88972 1.21542 0.96342 0.90887 0.92631 0.94890 1.21623 1.01421 0.96617 0.95164 1.21580 1.00692 0.97746 0.95863 1.21586 1.01443 0.94165 0.98290 1.21892 0.96871 0.98964 0.89382 1.60309 1.64694 1.04778 1.02192 0.93092 0.95705 0.96727 0.97162 0.92579 0.83700 0.90272 0.92807 0.91485 0.92242 0.91906 0.91642 0.91017 0.91716 0.92633 0.92036 0.91975 0.91023 0.95664 0.90645 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.42 5.45 -3.82 -0.02 1.40 16 11 N -0.68 -12.27 5.93 -105.54 -0.63 -12.90 16 12 C 0.09 1.28 1.98 -66.60 -0.13 1.14 16 13 H 0.03 0.50 7.32 -51.93 -0.38 0.12 16 14 C -0.12 -1.61 6.48 -25.61 -0.17 -1.78 16 15 C -0.12 -1.35 6.84 -25.03 -0.17 -1.52 16 16 C -0.11 -1.19 5.47 -24.70 -0.14 -1.33 16 17 C -0.09 -1.10 2.05 -88.96 -0.18 -1.28 16 18 H 0.09 1.27 7.98 -51.93 -0.41 0.85 16 19 C 0.10 1.12 1.89 -67.72 -0.13 0.99 16 20 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 21 C -0.11 -1.11 5.19 -26.65 -0.14 -1.25 16 22 C -0.12 -1.12 6.00 -26.61 -0.16 -1.28 16 23 C -0.12 -1.16 6.09 -26.65 -0.16 -1.32 16 24 C 0.06 0.67 6.55 -3.83 -0.03 0.65 16 25 N -0.69 -8.96 6.12 -106.76 -0.65 -9.61 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.01 0.21 8.07 -51.93 -0.42 -0.21 16 30 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.34 6.18 7.11 -39.29 -0.28 5.90 16 32 H 0.08 1.25 7.92 -51.93 -0.41 0.84 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 37 H 0.06 0.61 8.03 -51.93 -0.42 0.19 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.58 7.39 -51.93 -0.38 0.19 16 40 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.03 0.29 8.14 -51.92 -0.42 -0.14 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.35 5.04 6.59 -39.29 -0.26 4.78 16 LS Contribution 348.40 15.07 5.25 5.25 Total: -1.00 -29.41 348.40 -11.13 -40.54 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -8.84 Total: 5.01 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -1.98 Total: -18.70 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.54 Total: -48.96 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.41 -11.13 -40.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423033254.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.299 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds