Wall clock time and date at job start Mon Mar 30 2020 00:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00047 * 2 1 4 4 H 1.48508 * 109.46906 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47271 * 299.99943 * 3 2 1 6 6 H 1.48497 * 109.47061 * 60.00250 * 3 2 1 7 7 C 1.37878 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99864 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47111 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47093 * 179.97438 * 10 9 7 12 12 C 1.46900 * 110.99996 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.01607 * 34.94432 * 12 11 10 14 14 C 1.53869 * 110.03244 * 273.54583 * 12 11 10 15 15 C 1.54270 * 106.63967 * 240.69040 * 14 12 11 16 16 C 1.54961 * 104.16191 * 336.44607 * 15 14 12 17 17 C 1.54268 * 110.03156 * 156.37640 * 12 11 10 18 18 H 1.09001 * 110.48482 * 24.21949 * 17 12 11 19 19 C 1.52998 * 110.48927 * 261.70503 * 17 12 11 20 20 H 1.08998 * 109.46379 * 299.99881 * 19 17 12 21 21 C 1.53041 * 109.46410 * 180.02562 * 19 17 12 22 22 C 1.53113 * 109.28033 * 180.79663 * 21 19 17 23 23 C 1.53120 * 109.15286 * 57.66994 * 22 21 19 24 24 C 1.53040 * 109.27973 * 302.34122 * 23 22 21 25 25 N 1.46847 * 109.46050 * 59.98339 * 19 17 12 26 26 H 0.96999 * 120.00125 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47613 * 59.99404 * 9 7 2 28 28 H 1.08999 * 109.46917 * 299.99533 * 9 7 2 29 29 H 1.09004 * 109.47013 * 60.00270 * 10 9 7 30 30 H 1.08999 * 109.47336 * 299.99873 * 10 9 7 31 31 H 1.00901 * 111.00168 * 303.95250 * 11 10 9 32 32 H 1.09002 * 110.03268 * 0.02562 * 14 12 11 33 33 H 1.08995 * 110.03391 * 121.38432 * 14 12 11 34 34 H 1.08997 * 110.48585 * 95.09409 * 15 14 12 35 35 H 1.09002 * 110.48442 * 217.73292 * 15 14 12 36 36 H 1.09001 * 110.71970 * 279.57802 * 16 15 14 37 37 H 1.08998 * 110.76825 * 156.22170 * 16 15 14 38 38 H 1.09006 * 109.50113 * 300.74659 * 21 19 17 39 39 H 1.08999 * 109.50298 * 60.86420 * 21 19 17 40 40 H 1.09007 * 109.52885 * 297.76416 * 22 21 19 41 41 H 1.09003 * 109.57814 * 177.60121 * 22 21 19 42 42 H 1.09000 * 109.50204 * 182.40035 * 23 22 21 43 43 H 1.08999 * 109.50587 * 62.28085 * 23 22 21 44 44 H 1.09008 * 109.45925 * 299.16587 * 24 23 22 45 45 H 1.08997 * 109.45515 * 179.19399 * 24 23 22 46 46 H 1.00900 * 111.00026 * 305.84936 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0759 0.0018 13 1 3.3223 -5.8372 0.5883 14 6 2.8363 -6.4300 -1.4408 15 6 2.3677 -7.8791 -1.6867 16 6 2.2815 -8.4956 -0.2676 17 6 1.7356 -7.3219 0.5832 18 1 0.6545 -7.2398 0.4707 19 6 2.1071 -7.5063 2.0559 20 1 3.1861 -7.6318 2.1453 21 6 1.4020 -8.7473 2.6081 22 6 1.7608 -8.9166 4.0870 23 6 1.3570 -7.6518 4.8498 24 6 2.0631 -6.4424 4.2327 25 7 1.6871 -6.3236 2.8182 26 1 -0.4850 0.8400 0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8718 -3.6044 0.8906 30 1 2.8718 -3.6044 -0.8894 31 1 0.8745 -4.9841 0.7828 32 1 2.3455 -5.7545 -2.1414 33 1 3.9183 -6.3632 -1.5546 34 1 1.3888 -7.8873 -2.1661 35 1 3.0953 -8.4175 -2.2939 36 1 3.2684 -8.7994 0.0815 37 1 1.5894 -9.3376 -0.2534 38 1 0.3233 -8.6284 2.5065 39 1 1.7257 -9.6273 2.0523 40 1 2.8349 -9.0742 4.1856 41 1 1.2277 -9.7747 4.4963 42 1 1.6486 -7.7489 5.8956 43 1 0.2776 -7.5159 4.7835 44 1 3.1425 -6.5727 4.3118 45 1 1.7665 -5.5384 4.7646 46 1 2.0643 -5.4798 2.4134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000423033254.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:18 Heat of formation + Delta-G solvation = -52.515543 kcal Electronic energy + Delta-G solvation = -21194.039656 eV Core-core repulsion = 18308.610488 eV Total energy + Delta-G solvation = -2885.429168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.75813 -38.43770 -36.37487 -34.63654 -33.14015 -32.48162 -31.21864 -28.54985 -27.80033 -25.65420 -24.43978 -23.43467 -22.60792 -20.98637 -20.63072 -20.42646 -18.50327 -17.91137 -16.93962 -16.44337 -16.05899 -15.80988 -15.48713 -15.18111 -14.90240 -14.52438 -14.41978 -14.18190 -14.03729 -13.90835 -13.77404 -13.23893 -12.91670 -12.78255 -12.45412 -12.30779 -12.21682 -12.07224 -11.87905 -11.84172 -11.63422 -11.58640 -11.39322 -11.35458 -11.24378 -11.14186 -10.91452 -10.57023 -9.41343 -9.22697 -8.20101 -6.31718 1.39341 1.39933 1.53117 2.40082 3.06914 3.13233 3.42945 3.61232 3.69374 3.90678 4.00696 4.11335 4.17126 4.25788 4.36913 4.47267 4.48982 4.53364 4.56767 4.58051 4.71081 4.78559 4.81446 4.83815 4.91422 4.97178 5.02710 5.07263 5.10757 5.11178 5.21167 5.22444 5.26486 5.32891 5.39363 5.47147 5.48502 5.55504 5.68857 5.80833 6.13401 6.19519 6.28991 6.37013 6.62633 6.85899 7.37550 8.92277 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.019154 B = 0.004524 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.513878 B = 6187.210585 C = 7277.993925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.034 3.966 10 C 0.088 3.912 11 N -0.688 5.688 12 C 0.086 3.914 13 H 0.028 0.972 14 C -0.119 4.119 15 C -0.114 4.114 16 C -0.105 4.105 17 C -0.082 4.082 18 H 0.077 0.923 19 C 0.098 3.902 20 H 0.033 0.967 21 C -0.107 4.107 22 C -0.119 4.119 23 C -0.114 4.114 24 C 0.055 3.945 25 N -0.700 5.700 26 H 0.264 0.736 27 H -0.008 1.008 28 H -0.010 1.010 29 H 0.013 0.987 30 H 0.052 0.948 31 H 0.341 0.659 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.028 0.972 45 H 0.068 0.932 46 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.073 -21.261 5.553 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.003 4.003 10 C -0.041 4.041 11 N -0.320 5.320 12 C -0.024 4.024 13 H 0.046 0.954 14 C -0.158 4.158 15 C -0.152 4.152 16 C -0.143 4.143 17 C -0.101 4.101 18 H 0.095 0.905 19 C -0.012 4.012 20 H 0.051 0.949 21 C -0.145 4.145 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.075 4.075 25 N -0.332 5.332 26 H 0.072 0.928 27 H 0.010 0.990 28 H 0.009 0.991 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.161 0.839 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.086 0.914 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.215 -21.389 4.987 22.574 hybrid contribution 1.335 1.729 0.782 2.320 sum 6.550 -19.660 5.769 21.511 Atomic orbital electron populations 1.70119 1.07828 1.27701 1.51461 1.25963 0.95738 1.03312 0.94616 0.85383 0.78998 0.78702 0.77843 1.18641 1.20296 1.20268 1.21625 0.93412 0.92294 1.50844 0.92342 1.18893 0.94232 0.92301 0.94905 1.21750 0.95438 0.88793 0.98100 1.60708 1.19862 1.01332 1.50137 1.22255 0.93290 0.90474 0.96372 0.95427 1.22212 1.00012 0.97786 0.95764 1.22289 1.01459 0.94110 0.97342 1.22466 1.01506 0.96467 0.93861 1.22203 1.00448 0.94335 0.93158 0.90506 1.21579 0.96469 0.91095 0.92010 0.94912 1.21618 1.00582 0.96242 0.96060 1.21581 1.01229 0.97744 0.95066 1.21580 1.00578 0.93813 0.99249 1.21971 0.97247 0.99620 0.88621 1.60384 1.64977 1.04759 1.03091 0.92755 0.98956 0.99132 0.96852 0.92914 0.83909 0.92809 0.92037 0.91905 0.90203 0.90601 0.89697 0.91994 0.89854 0.92078 0.90444 0.90389 0.92018 0.95393 0.91397 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.81 9.11 25.60 0.23 -31.57 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.88 5.23 29.85 0.16 2.04 16 10 C 0.09 3.86 5.45 86.30 0.47 4.33 16 11 N -0.69 -25.48 5.93 -487.82 -2.89 -28.37 16 12 C 0.09 2.51 1.98 45.64 0.09 2.60 16 13 H 0.03 0.85 7.32 -2.39 -0.02 0.83 16 14 C -0.12 -3.23 6.48 31.32 0.20 -3.03 16 15 C -0.11 -2.35 6.84 31.70 0.22 -2.13 16 16 C -0.10 -1.90 5.47 31.91 0.17 -1.72 16 17 C -0.08 -1.94 2.05 -9.72 -0.02 -1.96 16 18 H 0.08 2.08 7.98 -2.39 -0.02 2.06 16 19 C 0.10 2.17 1.89 44.94 0.09 2.25 16 20 H 0.03 0.74 8.12 -2.39 -0.02 0.72 16 21 C -0.11 -1.93 5.19 30.65 0.16 -1.77 16 22 C -0.12 -1.91 6.00 30.67 0.18 -1.72 16 23 C -0.11 -2.11 6.09 30.65 0.19 -1.92 16 24 C 0.05 1.24 6.55 86.33 0.57 1.80 16 25 N -0.70 -18.31 6.12 -491.67 -3.01 -21.32 16 26 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 27 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 28 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H 0.01 0.57 8.07 -2.38 -0.02 0.55 16 30 H 0.05 2.33 8.10 -2.39 -0.02 2.31 16 31 H 0.34 12.85 7.11 -89.69 -0.64 12.21 16 32 H 0.05 1.73 7.92 -2.39 -0.02 1.71 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.22 8.05 -2.39 -0.02 1.20 16 37 H 0.08 1.27 8.03 -2.39 -0.02 1.25 16 38 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.08 1.20 7.39 -2.39 -0.02 1.18 16 40 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 45 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.33 9.95 6.59 -89.69 -0.59 9.36 16 Total: -1.00 -64.42 348.40 -0.73 -65.14 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.30 Total: 27.39 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 3.17 Total: -32.25 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -5.62 Total: -107.37 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.42 -0.73 -65.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423033254.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.627 kcal (2) G-P(sol) polarization free energy of solvation -64.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds