Wall clock time and date at job start Mon Mar 30 2020 00:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99992 * 2 1 4 4 H 1.48495 * 109.46763 * 269.99488 * 3 2 1 5 5 H 1.48495 * 109.47085 * 29.99721 * 3 2 1 6 6 H 1.48501 * 109.47056 * 149.99880 * 3 2 1 7 7 C 1.37881 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00397 * 0.02562 * 7 2 1 9 9 C 1.50710 * 119.99626 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46789 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.46469 * 179.97438 * 10 9 7 12 12 C 1.46901 * 110.99448 * 180.02562 * 11 10 9 13 13 H 1.08997 * 110.02034 * 49.65056 * 12 11 10 14 14 C 1.54270 * 110.03408 * 288.25947 * 12 11 10 15 15 C 1.54887 * 104.19622 * 217.05815 * 14 12 11 16 16 C 1.54889 * 102.75120 * 37.94357 * 15 14 12 17 17 C 1.53873 * 110.07529 * 171.06904 * 12 11 10 18 18 H 1.09000 * 110.03649 * 238.59481 * 17 12 11 19 19 C 1.53001 * 110.03040 * 0.02562 * 17 12 11 20 20 H 1.09001 * 109.46217 * 305.88805 * 19 17 12 21 21 C 1.53040 * 109.46365 * 65.86426 * 19 17 12 22 22 C 1.53118 * 109.28029 * 179.19382 * 21 19 17 23 23 C 1.53116 * 109.16283 * 302.34640 * 22 21 19 24 24 C 1.53041 * 109.27688 * 57.65253 * 23 22 21 25 25 N 1.46845 * 109.52582 * 300.82121 * 24 23 22 26 26 H 0.96996 * 119.99847 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.46895 * 60.00296 * 9 7 2 28 28 H 1.09000 * 109.47035 * 300.00054 * 9 7 2 29 29 H 1.09000 * 109.46891 * 59.99833 * 10 9 7 30 30 H 1.08992 * 109.46730 * 300.00074 * 10 9 7 31 31 H 1.00894 * 111.00498 * 303.95418 * 11 10 9 32 32 H 1.09008 * 110.48481 * 335.73552 * 14 12 11 33 33 H 1.08993 * 110.48659 * 98.24652 * 14 12 11 34 34 H 1.09009 * 110.75392 * 156.25370 * 15 14 12 35 35 H 1.08996 * 110.76107 * 279.43836 * 15 14 12 36 36 H 1.09002 * 110.49009 * 80.73251 * 16 15 14 37 37 H 1.09003 * 110.48435 * 203.24996 * 16 15 14 38 38 H 1.09001 * 109.50716 * 299.14028 * 21 19 17 39 39 H 1.09001 * 109.50069 * 59.25418 * 21 19 17 40 40 H 1.09001 * 109.51947 * 62.25645 * 22 21 19 41 41 H 1.09004 * 109.52100 * 182.43899 * 22 21 19 42 42 H 1.09000 * 109.50537 * 177.58954 * 23 22 21 43 43 H 1.08990 * 109.50467 * 297.71317 * 23 22 21 44 44 H 1.09005 * 109.46302 * 60.83960 * 24 23 22 45 45 H 1.08998 * 109.46029 * 180.81212 * 24 23 22 46 46 H 1.00901 * 110.99944 * 297.64555 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0010 11 7 5.4905 -2.6365 0.0009 12 6 6.0169 -4.0080 0.0002 13 1 5.5316 -4.5935 -0.7806 14 6 5.7824 -4.6648 1.3762 15 6 7.0504 -5.5235 1.6083 16 6 8.1765 -4.6354 1.0233 17 6 7.5391 -3.9893 -0.2242 18 1 7.7925 -4.5657 -1.1139 19 6 8.0289 -2.5478 -0.3758 20 1 7.4604 -2.0520 -1.1627 21 6 7.8306 -1.8003 0.9448 22 6 8.3405 -0.3643 0.7944 23 6 9.8138 -0.3951 0.3789 24 6 9.9546 -1.1833 -0.9254 25 7 9.4542 -2.5499 -0.7294 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8753 -0.6804 -0.8888 29 1 3.6585 -3.1502 -0.8892 30 1 3.6578 -3.1506 0.8907 31 1 5.8521 -2.1104 -0.7803 32 1 5.6898 -3.9040 2.1513 33 1 4.8926 -5.2937 1.3520 34 1 7.2095 -5.6977 2.6726 35 1 6.9809 -6.4686 1.0699 36 1 8.4705 -3.8698 1.7413 37 1 9.0359 -5.2444 0.7430 38 1 6.7708 -1.7854 1.1991 39 1 8.3879 -2.3035 1.7349 40 1 7.7574 0.1512 0.0313 41 1 8.2410 0.1589 1.7455 42 1 10.1709 0.6237 0.2286 43 1 10.4023 -0.8761 1.1600 44 1 9.3770 -0.6939 -1.7096 45 1 11.0044 -1.2193 -1.2164 46 1 9.9985 -3.0380 -0.0340 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423033255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:21 Heat of formation + Delta-G solvation = -12.524608 kcal Electronic energy + Delta-G solvation = -21723.906507 eV Core-core repulsion = 18840.211476 eV Total energy + Delta-G solvation = -2883.695031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17124 -37.38114 -34.82819 -32.63579 -31.94568 -31.30380 -29.90533 -27.47179 -26.64277 -23.82984 -23.29076 -22.68189 -21.24687 -20.28652 -19.63700 -18.66931 -16.79787 -16.01911 -15.62034 -15.31019 -14.91627 -14.68807 -14.49597 -14.13854 -13.95170 -13.45094 -13.25029 -12.99941 -12.50986 -12.37030 -12.02905 -11.76277 -11.55535 -11.42278 -11.13524 -11.07718 -11.00371 -10.86826 -10.80766 -10.60211 -10.58615 -10.23232 -10.07152 -9.91030 -9.81953 -9.65616 -9.21691 -8.53316 -8.28431 -7.77130 -6.04056 -4.02133 3.31540 3.39165 3.44371 4.18869 4.46173 4.56667 4.60521 4.74227 4.84439 4.98878 5.05054 5.10863 5.27018 5.30644 5.38539 5.46935 5.52929 5.58708 5.63193 5.68762 5.74166 5.79541 5.90841 5.93892 5.98680 6.02890 6.10629 6.13494 6.19320 6.22674 6.26113 6.31077 6.40346 6.51514 6.51936 6.74547 6.80486 7.14847 7.17438 7.37530 7.42320 7.65042 7.77176 7.91151 8.54054 9.00564 9.58562 11.09428 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.005700 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.133635 B = 4911.063747 C = 6076.470059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.009 4.009 10 C 0.068 3.932 11 N -0.681 5.681 12 C 0.087 3.913 13 H 0.038 0.962 14 C -0.114 4.114 15 C -0.123 4.123 16 C -0.124 4.124 17 C -0.081 4.081 18 H 0.074 0.926 19 C 0.103 3.897 20 H 0.078 0.922 21 C -0.170 4.170 22 C -0.120 4.120 23 C -0.158 4.158 24 C 0.059 3.941 25 N -0.686 5.686 26 H 0.263 0.737 27 H 0.024 0.976 28 H 0.007 0.993 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.336 0.664 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.126 0.874 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.744 -6.582 1.377 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.046 4.046 10 C -0.060 4.060 11 N -0.314 5.314 12 C -0.024 4.024 13 H 0.056 0.944 14 C -0.152 4.152 15 C -0.161 4.161 16 C -0.161 4.161 17 C -0.100 4.100 18 H 0.093 0.907 19 C -0.007 4.007 20 H 0.096 0.904 21 C -0.209 4.209 22 C -0.158 4.158 23 C -0.197 4.197 24 C -0.071 4.071 25 N -0.314 5.314 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.025 0.975 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.156 0.844 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.143 0.857 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 20.505 -6.502 1.350 21.554 hybrid contribution 0.149 1.048 -0.046 1.059 sum 20.654 -5.455 1.304 21.402 Atomic orbital electron populations 1.69916 1.06326 1.26875 1.51229 1.25006 0.94704 0.99156 0.94532 0.86765 0.80502 0.83547 0.78424 1.20451 1.21477 1.18768 1.21082 0.89468 0.94446 1.50848 0.91165 1.19534 0.96619 0.91955 0.96530 1.22009 0.84591 0.99813 0.99544 1.61111 1.09483 1.12006 1.48776 1.22105 0.93303 0.90262 0.96748 0.94364 1.22418 0.96960 0.98504 0.97312 1.22432 0.95334 0.98033 1.00287 1.22562 0.97556 0.98783 0.97206 1.21849 0.94174 0.95642 0.98350 0.90739 1.21422 0.87802 0.94955 0.96536 0.90445 1.22839 1.06614 0.94017 0.97386 1.21566 0.94834 0.98139 1.01248 1.22271 0.97813 1.00794 0.98826 1.21964 0.99988 0.88686 0.96473 1.60755 1.03867 1.15474 1.51321 0.92759 0.95764 0.97494 0.96123 0.91629 0.84356 0.90325 0.92176 0.91905 0.91980 0.90744 0.92198 0.85678 0.92792 0.92003 0.92468 0.92151 0.92562 0.91121 0.91375 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.85 9.66 -34.43 -0.33 -15.18 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.20 4.30 -27.88 -0.12 -0.32 16 10 C 0.07 1.34 5.44 -3.82 -0.02 1.32 16 11 N -0.68 -10.63 2.99 -105.55 -0.32 -10.95 16 12 C 0.09 1.16 3.02 -66.59 -0.20 0.96 16 13 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 14 C -0.11 -1.45 5.67 -25.07 -0.14 -1.59 16 15 C -0.12 -1.27 6.91 -24.74 -0.17 -1.44 16 16 C -0.12 -1.24 5.43 -25.07 -0.14 -1.38 16 17 C -0.08 -0.92 2.94 -89.50 -0.26 -1.19 16 18 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 19 C 0.10 1.20 1.78 -67.72 -0.12 1.08 16 20 H 0.08 1.03 6.28 -51.93 -0.33 0.70 16 21 C -0.17 -2.08 4.57 -26.65 -0.12 -2.21 16 22 C -0.12 -1.45 6.00 -26.61 -0.16 -1.61 16 23 C -0.16 -1.59 6.08 -26.65 -0.16 -1.75 16 24 C 0.06 0.59 6.55 -3.83 -0.03 0.56 16 25 N -0.69 -7.28 6.50 -106.76 -0.69 -7.97 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 28 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 29 H 0.02 0.42 8.13 -51.93 -0.42 -0.01 16 30 H 0.07 1.32 7.52 -51.93 -0.39 0.93 16 31 H 0.34 5.18 6.16 -39.29 -0.24 4.93 16 32 H 0.08 1.10 8.05 -51.92 -0.42 0.69 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.77 5.22 -51.93 -0.27 0.50 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.13 1.84 5.44 -51.93 -0.28 1.56 16 39 H 0.05 0.64 5.72 -51.93 -0.30 0.34 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.33 3.27 8.09 -39.29 -0.32 2.95 16 LS Contribution 334.82 15.07 5.05 5.05 Total: -1.00 -29.12 334.82 -10.32 -39.44 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.39 Total: 5.38 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -2.07 Total: -20.89 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.24 Total: -46.22 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.12 -10.32 -39.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423033255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.919 kcal (2) G-P(sol) polarization free energy of solvation -29.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds