Wall clock time and date at job start Mon Mar 30 2020 00:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99992 * 2 1 4 4 H 1.48495 * 109.46763 * 269.99488 * 3 2 1 5 5 H 1.48495 * 109.47085 * 29.99721 * 3 2 1 6 6 H 1.48501 * 109.47056 * 149.99880 * 3 2 1 7 7 C 1.37881 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00397 * 0.02562 * 7 2 1 9 9 C 1.50710 * 119.99626 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46789 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.46469 * 179.97438 * 10 9 7 12 12 C 1.46901 * 110.99448 * 180.02562 * 11 10 9 13 13 H 1.08997 * 110.02034 * 49.65056 * 12 11 10 14 14 C 1.54270 * 110.03408 * 288.25947 * 12 11 10 15 15 C 1.54887 * 104.19622 * 217.05815 * 14 12 11 16 16 C 1.54889 * 102.75120 * 37.94357 * 15 14 12 17 17 C 1.53873 * 110.07529 * 171.06904 * 12 11 10 18 18 H 1.09000 * 110.03649 * 238.59481 * 17 12 11 19 19 C 1.53001 * 110.03040 * 0.02562 * 17 12 11 20 20 H 1.09001 * 109.46217 * 305.88805 * 19 17 12 21 21 C 1.53040 * 109.46365 * 65.86426 * 19 17 12 22 22 C 1.53118 * 109.28029 * 179.19382 * 21 19 17 23 23 C 1.53116 * 109.16283 * 302.34640 * 22 21 19 24 24 C 1.53041 * 109.27688 * 57.65253 * 23 22 21 25 25 N 1.46845 * 109.52582 * 300.82121 * 24 23 22 26 26 H 0.96996 * 119.99847 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.46895 * 60.00296 * 9 7 2 28 28 H 1.09000 * 109.47035 * 300.00054 * 9 7 2 29 29 H 1.09000 * 109.46891 * 59.99833 * 10 9 7 30 30 H 1.08992 * 109.46730 * 300.00074 * 10 9 7 31 31 H 1.00894 * 111.00498 * 303.95418 * 11 10 9 32 32 H 1.09008 * 110.48481 * 335.73552 * 14 12 11 33 33 H 1.08993 * 110.48659 * 98.24652 * 14 12 11 34 34 H 1.09009 * 110.75392 * 156.25370 * 15 14 12 35 35 H 1.08996 * 110.76107 * 279.43836 * 15 14 12 36 36 H 1.09002 * 110.49009 * 80.73251 * 16 15 14 37 37 H 1.09003 * 110.48435 * 203.24996 * 16 15 14 38 38 H 1.09001 * 109.50716 * 299.14028 * 21 19 17 39 39 H 1.09001 * 109.50069 * 59.25418 * 21 19 17 40 40 H 1.09001 * 109.51947 * 62.25645 * 22 21 19 41 41 H 1.09004 * 109.52100 * 182.43899 * 22 21 19 42 42 H 1.09000 * 109.50537 * 177.58954 * 23 22 21 43 43 H 1.08990 * 109.50467 * 297.71317 * 23 22 21 44 44 H 1.09005 * 109.46302 * 60.83960 * 24 23 22 45 45 H 1.08998 * 109.46029 * 180.81212 * 24 23 22 46 46 H 1.00901 * 110.99944 * 297.64555 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0010 11 7 5.4905 -2.6365 0.0009 12 6 6.0169 -4.0080 0.0002 13 1 5.5316 -4.5935 -0.7806 14 6 5.7824 -4.6648 1.3762 15 6 7.0504 -5.5235 1.6083 16 6 8.1765 -4.6354 1.0233 17 6 7.5391 -3.9893 -0.2242 18 1 7.7925 -4.5657 -1.1139 19 6 8.0289 -2.5478 -0.3758 20 1 7.4604 -2.0520 -1.1627 21 6 7.8306 -1.8003 0.9448 22 6 8.3405 -0.3643 0.7944 23 6 9.8138 -0.3951 0.3789 24 6 9.9546 -1.1833 -0.9254 25 7 9.4542 -2.5499 -0.7294 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8753 -0.6804 -0.8888 29 1 3.6585 -3.1502 -0.8892 30 1 3.6578 -3.1506 0.8907 31 1 5.8521 -2.1104 -0.7803 32 1 5.6898 -3.9040 2.1513 33 1 4.8926 -5.2937 1.3520 34 1 7.2095 -5.6977 2.6726 35 1 6.9809 -6.4686 1.0699 36 1 8.4705 -3.8698 1.7413 37 1 9.0359 -5.2444 0.7430 38 1 6.7708 -1.7854 1.1991 39 1 8.3879 -2.3035 1.7349 40 1 7.7574 0.1512 0.0313 41 1 8.2410 0.1589 1.7455 42 1 10.1709 0.6237 0.2286 43 1 10.4023 -0.8761 1.1600 44 1 9.3770 -0.6939 -1.7096 45 1 11.0044 -1.2193 -1.2164 46 1 9.9985 -3.0380 -0.0340 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000423033255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:20 Heat of formation + Delta-G solvation = -30.301268 kcal Electronic energy + Delta-G solvation = -21724.677361 eV Core-core repulsion = 18840.211476 eV Total energy + Delta-G solvation = -2884.465885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.15372 -38.37036 -36.34734 -34.62013 -32.83760 -32.32209 -31.57956 -28.39010 -28.00027 -25.47778 -24.27300 -23.60275 -22.49255 -21.75624 -20.64754 -19.68875 -18.92078 -17.15052 -16.72600 -16.45783 -16.22718 -15.82072 -15.74044 -15.34640 -14.95786 -14.78894 -14.65197 -14.43340 -14.08535 -13.45817 -13.29192 -13.08570 -12.84634 -12.71733 -12.37685 -12.19314 -12.03164 -11.97852 -11.87794 -11.79623 -11.70492 -11.59229 -11.51371 -11.38576 -11.28505 -11.02270 -10.96292 -10.77886 -9.17151 -9.05657 -8.31104 -6.35233 1.34303 1.36702 1.49535 2.34991 3.04715 3.24757 3.38861 3.66717 3.78760 3.98418 4.08726 4.17634 4.24084 4.33904 4.42294 4.47929 4.54227 4.55376 4.60526 4.65616 4.77567 4.78997 4.83570 4.90512 4.97136 5.01873 5.08853 5.13587 5.18501 5.19064 5.23318 5.26143 5.30567 5.36755 5.44220 5.48951 5.53557 5.61607 5.63884 5.74500 6.16670 6.24862 6.31349 6.54051 6.63689 6.73833 7.29606 8.85818 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.005700 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.133635 B = 4911.063747 C = 6076.470059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.532 4.532 8 H 0.030 0.970 9 C -0.001 4.001 10 C 0.084 3.916 11 N -0.670 5.670 12 C 0.084 3.916 13 H 0.030 0.970 14 C -0.116 4.116 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.073 4.073 18 H 0.077 0.923 19 C 0.109 3.891 20 H 0.060 0.940 21 C -0.163 4.163 22 C -0.123 4.123 23 C -0.150 4.150 24 C 0.059 3.941 25 N -0.685 5.685 26 H 0.266 0.734 27 H 0.023 0.977 28 H 0.014 0.986 29 H 0.010 0.990 30 H 0.056 0.944 31 H 0.339 0.661 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.000 -6.363 1.522 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.571 4.571 8 H 0.049 0.951 9 C -0.039 4.039 10 C -0.045 4.045 11 N -0.303 5.303 12 C -0.027 4.027 13 H 0.048 0.952 14 C -0.154 4.154 15 C -0.153 4.153 16 C -0.153 4.153 17 C -0.092 4.092 18 H 0.095 0.905 19 C -0.001 4.001 20 H 0.078 0.922 21 C -0.202 4.202 22 C -0.161 4.161 23 C -0.189 4.189 24 C -0.071 4.071 25 N -0.314 5.314 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.032 0.968 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.160 0.840 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.104 0.896 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 23.787 -6.304 1.495 24.654 hybrid contribution -0.920 0.902 -0.095 1.292 sum 22.867 -5.402 1.400 23.538 Atomic orbital electron populations 1.70066 1.08305 1.28177 1.52665 1.25982 0.95577 1.03455 0.94038 0.85633 0.79526 0.78199 0.79133 1.19243 1.20981 1.17033 1.21427 0.92082 0.93085 1.50481 0.95147 1.19401 0.93380 0.94547 0.96527 1.21654 0.87211 0.97012 0.98635 1.61100 1.06569 1.13715 1.48924 1.22219 0.94832 0.88613 0.97011 0.95164 1.22404 0.98202 0.98428 0.96333 1.22408 0.93772 0.97904 1.01265 1.22522 0.97843 0.98784 0.96188 1.21778 0.92353 0.95776 0.99336 0.90472 1.21257 0.88571 0.94700 0.95560 0.92175 1.22712 1.05069 0.94512 0.97936 1.21573 0.96222 0.97661 1.00617 1.22203 0.96239 1.01461 0.99015 1.21996 1.00794 0.88158 0.96125 1.60718 1.03095 1.16044 1.51536 0.92471 0.95848 0.96774 0.97215 0.92547 0.84004 0.91785 0.93009 0.90773 0.91057 0.90731 0.90291 0.88157 0.91918 0.93496 0.92871 0.91383 0.91669 0.92123 0.89589 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 2 C 0.01 0.37 5.47 84.66 0.46 0.84 16 3 Si 0.95 45.14 27.47 68.60 1.88 47.02 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 7 C -0.53 -31.29 9.66 25.60 0.25 -31.05 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 9 C 0.00 -0.04 4.30 29.85 0.13 0.09 16 10 C 0.08 3.35 5.44 86.30 0.47 3.82 16 11 N -0.67 -20.81 2.99 -487.84 -1.46 -22.27 16 12 C 0.08 2.18 3.02 45.64 0.14 2.32 16 13 H 0.03 0.85 8.08 -2.39 -0.02 0.83 16 14 C -0.12 -2.86 5.67 31.67 0.18 -2.68 16 15 C -0.12 -2.12 6.91 31.88 0.22 -1.90 16 16 C -0.12 -1.99 5.43 31.67 0.17 -1.82 16 17 C -0.07 -1.53 2.94 -10.07 -0.03 -1.56 16 18 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 19 C 0.11 2.36 1.78 44.94 0.08 2.44 16 20 H 0.06 1.53 6.28 -2.39 -0.01 1.51 16 21 C -0.16 -3.76 4.57 30.65 0.14 -3.62 16 22 C -0.12 -2.77 6.00 30.67 0.18 -2.59 16 23 C -0.15 -2.63 6.08 30.65 0.19 -2.45 16 24 C 0.06 1.02 6.55 86.33 0.57 1.59 16 25 N -0.68 -12.69 6.50 -491.66 -3.20 -15.89 16 26 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 27 H 0.02 1.11 7.20 -2.39 -0.02 1.10 16 28 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 29 H 0.01 0.40 8.13 -2.39 -0.02 0.38 16 30 H 0.06 2.34 7.52 -2.39 -0.02 2.32 16 31 H 0.34 10.30 6.16 -89.70 -0.55 9.75 16 32 H 0.06 1.78 8.05 -2.38 -0.02 1.76 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.31 5.22 -2.39 -0.01 1.30 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.10 2.87 5.44 -2.39 -0.01 2.86 16 39 H 0.06 1.33 5.72 -2.39 -0.01 1.32 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.34 5.51 8.09 -89.69 -0.73 4.78 16 Total: -1.00 -63.75 334.82 0.29 -63.46 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -0.39 Total: 24.52 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 3.14 Total: -36.57 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -4.36 Total: -98.43 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -63.75 0.29 -63.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423033255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.159 kcal (2) G-P(sol) polarization free energy of solvation -63.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds