Wall clock time and date at job start Mon Mar 30 2020 00:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46892 * 109.47353 * 2 1 4 4 C 1.46904 * 111.00376 * 287.98526 * 3 2 1 5 5 C 1.50704 * 109.47262 * 160.35768 * 4 3 2 6 6 H 1.07994 * 120.00033 * 4.68060 * 5 4 3 7 7 C 1.37880 * 119.99628 * 184.67395 * 5 4 3 8 8 N 1.31516 * 119.99951 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99503 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47234 * 90.00300 * 9 7 5 11 11 H 1.48498 * 109.46752 * 209.99906 * 9 7 5 12 12 H 1.48503 * 109.47350 * 329.99808 * 9 7 5 13 13 C 1.46900 * 110.99973 * 164.03210 * 3 2 1 14 14 C 1.50706 * 109.46806 * 293.95212 * 13 3 2 15 15 C 1.34376 * 126.52375 * 95.00409 * 14 13 3 16 16 N 1.34387 * 108.31945 * 179.74242 * 15 14 13 17 17 C 1.31204 * 109.30061 * 0.42693 * 16 15 14 18 18 N 1.38500 * 125.78571 * 179.83621 * 17 16 15 19 19 C 1.46890 * 111.00317 * 359.69177 * 18 17 16 20 20 C 1.46906 * 110.99883 * 123.64932 * 18 17 16 21 21 N 1.36025 * 108.41974 * 359.57265 * 17 16 15 22 22 C 1.46504 * 126.49486 * 180.28327 * 21 17 16 23 23 H 1.09003 * 109.47143 * 299.36926 * 1 2 3 24 24 H 1.09003 * 109.47064 * 59.36595 * 1 2 3 25 25 H 1.08995 * 109.47420 * 179.36555 * 1 2 3 26 26 H 1.09002 * 109.46719 * 239.99992 * 2 1 3 27 27 H 1.08998 * 109.46970 * 120.00333 * 2 1 3 28 28 H 1.08996 * 109.47140 * 280.36025 * 4 3 2 29 29 H 1.09001 * 109.46778 * 40.35828 * 4 3 2 30 30 H 0.97002 * 119.99194 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.47441 * 173.95785 * 13 3 2 32 32 H 1.08991 * 109.47402 * 53.95498 * 13 3 2 33 33 H 1.08003 * 125.84295 * 359.97438 * 15 14 13 34 34 H 1.09004 * 109.46989 * 183.95513 * 19 18 17 35 35 H 1.09005 * 109.47188 * 63.95734 * 19 18 17 36 36 H 1.08997 * 109.47581 * 303.95455 * 19 18 17 37 37 H 1.08998 * 109.46696 * 299.99658 * 20 18 17 38 38 H 1.09000 * 109.46687 * 59.99344 * 20 18 17 39 39 H 1.09001 * 109.46849 * 179.97438 * 20 18 17 40 40 H 1.08999 * 109.47253 * 89.97319 * 22 21 17 41 41 H 1.08997 * 109.46993 * 209.97855 * 22 21 17 42 42 H 1.09002 * 109.46699 * 329.97696 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7960 2.0225 -1.3044 5 6 1.8473 3.5204 -1.1468 6 1 2.1026 3.9544 -0.1915 7 6 1.5685 4.3366 -2.2225 8 7 1.2572 3.8080 -3.3858 9 14 1.6328 6.1933 -2.0273 10 1 3.0033 6.6761 -2.3336 11 1 0.6658 6.8230 -2.9620 12 1 1.2802 6.5568 -0.6313 13 6 3.4383 1.4417 0.3773 14 6 3.5944 1.0062 1.8116 15 6 3.8969 -0.2297 2.2437 16 7 3.9493 -0.2067 3.5864 17 6 3.6796 1.0054 4.0102 18 7 3.6373 1.4098 5.3341 19 6 3.9313 0.2887 6.2367 20 6 4.5555 2.5316 5.5715 21 7 3.4544 1.7987 2.9284 22 6 3.1255 3.2262 2.9482 23 1 -0.3633 0.5040 0.8956 24 1 -0.3633 0.5237 -0.8843 25 1 -0.3634 -1.0275 -0.0114 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.5704 1.7038 -2.0022 29 1 0.8185 1.7308 -1.6885 30 1 1.0614 4.3823 -4.1426 31 1 3.8034 2.4627 0.2659 32 1 4.0129 0.7779 -0.2686 33 1 4.0720 -1.0930 1.6188 34 1 3.8227 0.6165 7.2705 35 1 4.9525 -0.0540 6.0696 36 1 3.2371 -0.5281 6.0397 37 1 5.5736 2.2246 5.3322 38 1 4.2718 3.3733 4.9397 39 1 4.5021 2.8295 6.6187 40 1 4.0446 3.8113 2.9147 41 1 2.5085 3.4689 2.0831 42 1 2.5788 3.4605 3.8616 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425323810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:34 Heat of formation + Delta-G solvation = 81.158100 kcal Electronic energy + Delta-G solvation = -21108.220513 eV Core-core repulsion = 18125.047526 eV Total energy + Delta-G solvation = -2983.172987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.81475 -37.42506 -36.51633 -33.75694 -32.68155 -30.79466 -29.22947 -27.79148 -26.88568 -26.63899 -24.89707 -23.55960 -22.57672 -20.31968 -20.05579 -19.16910 -16.95758 -16.53408 -15.91682 -15.28384 -15.08286 -14.82405 -14.47504 -14.12010 -13.81489 -13.68056 -13.24219 -12.93936 -12.73813 -12.47545 -12.43109 -12.20848 -11.98169 -11.79147 -11.57776 -11.30470 -11.15476 -10.95180 -10.84013 -10.64102 -10.29903 -9.84960 -9.60908 -9.48779 -9.25372 -9.19665 -8.46854 -7.51042 -7.25062 -6.06697 -4.08375 2.29769 2.80836 3.26487 3.32900 3.33864 3.35954 3.92023 4.37661 4.81717 4.97425 5.05779 5.12659 5.15941 5.29626 5.33486 5.39695 5.48158 5.50582 5.54148 5.72564 5.78177 5.84586 5.87708 6.00976 6.06213 6.17150 6.30356 6.34712 6.41204 6.59705 6.64500 6.82172 6.88260 7.13496 7.22155 7.31570 7.70012 7.76484 8.08667 8.17501 8.36144 8.50519 8.97698 9.55570 11.03740 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.021119 B = 0.005521 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.487067 B = 5070.283774 C = 5996.776262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 N -0.532 5.532 4 C 0.190 3.810 5 C -0.504 4.504 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.133 3.867 14 C 0.012 3.988 15 C -0.027 4.027 16 N -0.517 5.517 17 C 0.369 3.631 18 N -0.462 5.462 19 C 0.048 3.952 20 C 0.017 3.983 21 N -0.447 5.447 22 C 0.070 3.930 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.044 0.956 26 H 0.022 0.978 27 H 0.064 0.936 28 H -0.010 1.010 29 H 0.039 0.961 30 H 0.261 0.739 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.164 0.836 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.105 0.895 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.427 -3.771 14.515 15.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.080 4.080 3 N -0.258 5.258 4 C 0.066 3.934 5 C -0.543 4.543 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.004 3.996 14 C -0.103 4.103 15 C -0.175 4.175 16 N -0.241 5.241 17 C 0.017 3.983 18 N -0.184 5.184 19 C -0.100 4.100 20 C -0.131 4.131 21 N -0.133 5.133 22 C -0.072 4.072 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.007 0.993 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.181 0.819 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.124 0.876 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.768 -3.788 15.284 16.452 hybrid contribution 0.897 1.110 -1.301 1.931 sum 5.665 -2.678 13.983 15.322 Atomic orbital electron populations 1.21710 0.95640 0.99882 1.02585 1.22037 0.95900 0.90657 0.99418 1.62151 1.14363 1.14953 1.34285 1.19809 0.96693 0.94116 0.82827 1.21101 1.46467 0.90658 0.96090 0.92277 1.24973 0.95461 0.98817 0.95256 1.69950 1.47418 1.35232 1.01042 0.86554 0.77738 0.85456 0.77979 1.20789 1.21242 1.19866 1.20361 0.91189 1.01681 0.86415 1.21347 1.08119 0.91364 0.89450 1.21768 1.09003 0.96211 0.90547 1.70515 1.23634 1.18157 1.11807 1.20892 1.04551 0.86905 0.85966 1.58714 1.50516 1.10249 0.98937 1.22195 1.01261 0.92152 0.94377 1.22655 0.93941 0.93332 1.03136 1.45010 1.53199 1.09852 1.05255 1.22146 1.01823 0.77584 1.05640 0.92734 0.92142 0.93695 0.95999 0.91741 0.99252 0.94280 0.92894 0.89469 0.93559 0.81884 0.90960 0.94080 0.90126 0.94501 0.90612 0.89999 0.91415 0.87627 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.99 37.16 0.37 -2.14 16 2 C 0.05 0.90 5.55 -3.83 -0.02 0.88 16 3 N -0.53 -11.12 4.37 -237.52 -1.04 -12.16 16 4 C 0.19 4.75 4.59 -4.97 -0.02 4.73 16 5 C -0.50 -13.46 8.61 -34.44 -0.30 -13.76 16 6 H 0.06 1.53 7.51 -52.49 -0.39 1.14 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -25.94 13.29 55.43 0.74 -25.21 16 9 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.13 2.49 4.87 -4.97 -0.02 2.47 16 14 C 0.01 0.22 5.76 -81.33 -0.47 -0.25 16 15 C -0.03 -0.47 10.36 -17.80 -0.18 -0.65 16 16 N -0.52 -8.97 10.27 -13.92 -0.14 -9.12 16 17 C 0.37 5.94 7.13 -319.60 -2.28 3.66 16 18 N -0.46 -6.04 5.02 -190.47 -0.96 -6.99 16 19 C 0.05 0.53 8.96 60.06 0.54 1.07 16 20 C 0.02 0.17 9.31 60.07 0.56 0.73 16 21 N -0.45 -7.29 3.20 -120.30 -0.38 -7.68 16 22 C 0.07 0.98 9.18 59.85 0.55 1.53 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 1.18 6.52 -51.93 -0.34 0.84 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.02 0.40 8.05 -51.93 -0.42 -0.01 16 27 H 0.06 1.15 5.84 -51.93 -0.30 0.84 16 28 H -0.01 -0.27 8.00 -51.93 -0.42 -0.69 16 29 H 0.04 1.05 6.24 -51.93 -0.32 0.73 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.09 1.73 7.27 -51.93 -0.38 1.35 16 32 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 33 H 0.16 2.46 8.06 -52.48 -0.42 2.04 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.98 7.97 -51.93 -0.41 0.57 16 37 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.74 5.21 -51.93 -0.27 0.47 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.81 7.77 -51.93 -0.40 0.40 16 41 H 0.11 1.72 7.76 -51.93 -0.40 1.31 16 42 H 0.08 1.03 7.48 -51.93 -0.39 0.64 16 LS Contribution 335.72 15.07 5.06 5.06 Total: -1.00 -30.58 335.72 -10.09 -40.66 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.97 Total: -0.12 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.38 Total: -0.30 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -1.79 Total: -61.15 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.58 -10.09 -40.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425323810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.823 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds