Wall clock time and date at job start Mon Mar 30 2020 00:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47298 * 2 1 4 4 C 1.50699 * 109.47505 * 120.00446 * 2 1 3 5 5 H 1.08004 * 120.00018 * 120.00018 * 4 2 1 6 6 C 1.37876 * 119.99795 * 299.99854 * 4 2 1 7 7 N 1.31509 * 120.00049 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99702 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47305 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46876 * 120.00279 * 8 6 4 11 11 H 1.48503 * 109.47164 * 239.99930 * 8 6 4 12 12 N 1.46900 * 109.47089 * 240.00361 * 2 1 3 13 13 C 1.46901 * 111.00209 * 183.94851 * 12 2 1 14 14 C 1.46910 * 110.99997 * 60.00104 * 12 2 1 15 15 C 1.50699 * 109.47209 * 190.00367 * 14 12 2 16 16 C 1.34379 * 126.52937 * 94.68236 * 15 14 12 17 17 N 1.34390 * 108.31678 * 179.89497 * 16 15 14 18 18 C 1.31194 * 109.30343 * 0.37663 * 17 16 15 19 19 N 1.38508 * 125.79017 * 179.76686 * 18 17 16 20 20 C 1.46903 * 110.99730 * 296.48799 * 19 18 17 21 21 C 1.46896 * 110.99458 * 60.43977 * 19 18 17 22 22 N 1.36025 * 108.42437 * 359.77039 * 18 17 16 23 23 C 1.46497 * 126.49737 * 179.97438 * 22 18 17 24 24 H 1.08995 * 109.47592 * 59.99815 * 1 2 3 25 25 H 1.09003 * 109.46941 * 299.99631 * 1 2 3 26 26 H 1.08999 * 109.47298 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99465 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47015 * 60.00563 * 13 12 2 29 29 H 1.09000 * 109.47215 * 179.97438 * 13 12 2 30 30 H 1.08994 * 109.47291 * 300.00396 * 13 12 2 31 31 H 1.09005 * 109.46565 * 310.00074 * 14 12 2 32 32 H 1.08998 * 109.47214 * 69.99389 * 14 12 2 33 33 H 1.08000 * 125.83713 * 0.03565 * 16 15 14 34 34 H 1.08998 * 109.47452 * 60.00197 * 20 19 18 35 35 H 1.08997 * 109.46543 * 179.97438 * 20 19 18 36 36 H 1.08995 * 109.47160 * 299.99697 * 20 19 18 37 37 H 1.09003 * 109.46982 * 56.96362 * 21 19 18 38 38 H 1.09002 * 109.46550 * 176.95717 * 21 19 18 39 39 H 1.08995 * 109.47614 * 296.95474 * 21 19 18 40 40 H 1.09000 * 109.47541 * 275.61830 * 23 22 18 41 41 H 1.08997 * 109.47167 * 35.62386 * 23 22 18 42 42 H 1.09004 * 109.46855 * 155.62465 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8294 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.1466 -2.2872 3.6035 10 1 3.1468 -0.1876 4.8163 11 1 1.1663 -1.5870 4.8159 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5486 -0.0262 -2.4212 15 6 1.8577 -0.8909 -3.6160 16 6 1.0304 -1.7745 -4.1995 17 7 1.6772 -2.3401 -5.2328 18 6 2.8890 -1.8434 -5.3102 19 7 3.8481 -2.1900 -6.2474 20 6 4.2315 -3.6015 -6.1109 21 6 3.3815 -1.9006 -7.6099 22 7 3.0437 -0.9302 -4.3140 23 6 4.2450 -0.1390 -4.0361 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.7089 1.1610 3.4845 28 1 3.8030 -1.3531 -0.3069 29 1 3.8208 -1.3115 -2.0861 30 1 3.9185 0.2052 -1.1592 31 1 0.4721 0.1326 -2.3563 32 1 2.0517 0.9348 -2.5280 33 1 0.0180 -1.9911 -3.8920 34 1 3.3548 -4.2321 -6.2585 35 1 4.9854 -3.8471 -6.8589 36 1 4.6387 -3.7727 -5.1144 37 1 3.1194 -0.8454 -7.6877 38 1 4.1738 -2.1316 -8.3219 39 1 2.5053 -2.5099 -7.8310 40 1 4.9309 -0.7231 -3.4226 41 1 4.7317 0.1245 -4.9751 42 1 3.9659 0.7703 -3.5037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425337373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:51 Heat of formation + Delta-G solvation = 91.775910 kcal Electronic energy + Delta-G solvation = -21079.495411 eV Core-core repulsion = 18096.782846 eV Total energy + Delta-G solvation = -2982.712564 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.85499 -37.46464 -36.59813 -33.81453 -32.82336 -30.10732 -29.03099 -27.75905 -26.94900 -26.45355 -24.76043 -24.07203 -23.07096 -20.41095 -19.72076 -19.05369 -17.09065 -16.35388 -16.10422 -15.43585 -15.17761 -14.68291 -14.58389 -14.03990 -13.66931 -13.50236 -13.25135 -12.79266 -12.61213 -12.45497 -12.35514 -12.30654 -12.00766 -11.87762 -11.82444 -11.13991 -11.04858 -10.72731 -10.66318 -10.18160 -10.08405 -9.97114 -9.84175 -9.30137 -8.92504 -8.88767 -8.47147 -7.94310 -7.24143 -6.04635 -4.09144 2.17745 2.71120 3.27618 3.30643 3.35925 3.40441 3.90852 4.38857 4.87386 4.92344 4.98705 5.12833 5.23205 5.27839 5.31361 5.35182 5.39327 5.49085 5.54883 5.60213 5.71957 5.77209 6.00741 6.09289 6.15459 6.22001 6.41560 6.61913 6.67273 6.76122 6.80893 7.01040 7.07279 7.08945 7.45868 7.64290 7.66118 7.79657 8.14075 8.26436 8.28023 8.53164 8.97116 9.56147 11.02120 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.035017 B = 0.004384 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.412918 B = 6385.088250 C = 6647.510296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.283 1.283 12 N -0.529 5.529 13 C 0.034 3.966 14 C 0.122 3.878 15 C 0.016 3.984 16 C -0.012 4.012 17 N -0.507 5.507 18 C 0.351 3.649 19 N -0.473 5.473 20 C 0.037 3.963 21 C 0.038 3.962 22 N -0.442 5.442 23 C 0.079 3.921 24 H 0.009 0.991 25 H 0.086 0.914 26 H 0.037 0.963 27 H 0.260 0.740 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.010 0.990 31 H 0.100 0.900 32 H 0.027 0.973 33 H 0.169 0.831 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.911 -2.231 -15.992 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.254 5.254 13 C -0.115 4.115 14 C -0.007 4.007 15 C -0.099 4.099 16 C -0.161 4.161 17 N -0.230 5.230 18 C 0.000 4.000 19 N -0.197 5.197 20 C -0.110 4.110 21 C -0.109 4.109 22 N -0.128 5.128 23 C -0.064 4.064 24 H 0.028 0.972 25 H 0.105 0.895 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.029 0.971 31 H 0.118 0.882 32 H 0.045 0.955 33 H 0.186 0.814 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.873 -2.804 -16.242 17.497 hybrid contribution 0.398 0.576 1.332 1.505 sum 6.271 -2.228 -14.909 16.327 Atomic orbital electron populations 1.21871 0.97527 0.99911 0.99957 1.19287 0.92502 0.91913 0.85633 0.98375 1.21167 1.31045 1.12272 0.89656 0.91843 1.24920 0.95173 0.95066 0.99016 1.69896 1.36896 1.23061 1.23356 0.86469 0.78630 0.79605 0.82877 1.19772 1.21164 1.20960 1.62192 1.09218 1.52501 1.01522 1.22405 0.89003 0.98765 1.01313 1.20592 1.01939 0.91838 0.86353 1.21400 0.85791 1.04548 0.98202 1.21833 1.00744 0.98159 0.95388 1.70584 1.04180 1.26803 1.21405 1.20590 0.90979 0.95098 0.93350 1.58654 1.35841 1.22282 1.02935 1.22370 1.00470 0.85441 1.02748 1.22349 0.99860 1.01793 0.86946 1.45330 1.12145 1.31504 1.23836 1.22029 0.85858 0.95740 1.02792 0.97197 0.89544 0.94414 0.93007 0.90556 0.93857 0.97108 0.88158 0.95459 0.81382 0.93721 0.90678 0.91329 0.91561 0.90708 0.93744 0.90401 0.89775 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.76 37.15 0.33 -2.87 16 2 C 0.21 5.22 2.06 -68.87 -0.14 5.08 16 3 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 4 C -0.50 -13.54 7.93 -34.44 -0.27 -13.81 16 5 H 0.06 1.73 6.39 -52.48 -0.34 1.39 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.53 -11.23 4.61 -237.73 -1.10 -12.32 16 13 C 0.03 0.65 8.09 60.06 0.49 1.14 16 14 C 0.12 2.20 5.02 -4.97 -0.02 2.18 16 15 C 0.02 0.27 5.73 -81.33 -0.47 -0.20 16 16 C -0.01 -0.21 11.76 -17.79 -0.21 -0.42 16 17 N -0.51 -8.77 11.18 -13.91 -0.16 -8.92 16 18 C 0.35 5.44 6.33 -319.60 -2.02 3.41 16 19 N -0.47 -5.90 4.98 -190.48 -0.95 -6.85 16 20 C 0.04 0.41 9.51 60.07 0.57 0.98 16 21 C 0.04 0.39 9.48 60.06 0.57 0.96 16 22 N -0.44 -6.80 2.80 -120.30 -0.34 -7.14 16 23 C 0.08 0.96 9.18 59.85 0.55 1.51 16 24 H 0.01 0.19 6.20 -51.93 -0.32 -0.13 16 25 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.08 1.61 6.23 -51.93 -0.32 1.29 16 29 H 0.04 0.76 4.43 -51.93 -0.23 0.53 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.10 1.79 5.83 -51.93 -0.30 1.49 16 32 H 0.03 0.48 7.31 -51.93 -0.38 0.10 16 33 H 0.17 2.67 8.06 -52.49 -0.42 2.24 16 34 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.04 0.49 8.13 -51.93 -0.42 0.07 16 40 H 0.08 0.93 6.86 -51.93 -0.36 0.57 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.99 7.12 -51.93 -0.37 0.62 16 LS Contribution 329.09 15.07 4.96 4.96 Total: -1.00 -30.16 329.09 -9.42 -39.58 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.72 Total: -0.50 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -0.73 Total: -0.52 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -1.91 Total: -59.62 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.16 -9.42 -39.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425337373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.357 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds