Wall clock time and date at job start Mon Mar 30 2020 00:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47298 * 2 1 4 4 C 1.50699 * 109.47505 * 120.00446 * 2 1 3 5 5 H 1.08004 * 120.00018 * 120.00018 * 4 2 1 6 6 C 1.37876 * 119.99795 * 299.99854 * 4 2 1 7 7 N 1.31509 * 120.00049 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99702 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47305 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46876 * 120.00279 * 8 6 4 11 11 H 1.48503 * 109.47164 * 239.99930 * 8 6 4 12 12 N 1.46900 * 109.47089 * 240.00361 * 2 1 3 13 13 C 1.46901 * 111.00209 * 183.94851 * 12 2 1 14 14 C 1.46910 * 110.99997 * 60.00104 * 12 2 1 15 15 C 1.50699 * 109.47209 * 190.00367 * 14 12 2 16 16 C 1.34379 * 126.52937 * 94.68236 * 15 14 12 17 17 N 1.34390 * 108.31678 * 179.89497 * 16 15 14 18 18 C 1.31194 * 109.30343 * 0.37663 * 17 16 15 19 19 N 1.38508 * 125.79017 * 179.76686 * 18 17 16 20 20 C 1.46903 * 110.99730 * 296.48799 * 19 18 17 21 21 C 1.46896 * 110.99458 * 60.43977 * 19 18 17 22 22 N 1.36025 * 108.42437 * 359.77039 * 18 17 16 23 23 C 1.46497 * 126.49737 * 179.97438 * 22 18 17 24 24 H 1.08995 * 109.47592 * 59.99815 * 1 2 3 25 25 H 1.09003 * 109.46941 * 299.99631 * 1 2 3 26 26 H 1.08999 * 109.47298 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99465 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47015 * 60.00563 * 13 12 2 29 29 H 1.09000 * 109.47215 * 179.97438 * 13 12 2 30 30 H 1.08994 * 109.47291 * 300.00396 * 13 12 2 31 31 H 1.09005 * 109.46565 * 310.00074 * 14 12 2 32 32 H 1.08998 * 109.47214 * 69.99389 * 14 12 2 33 33 H 1.08000 * 125.83713 * 0.03565 * 16 15 14 34 34 H 1.08998 * 109.47452 * 60.00197 * 20 19 18 35 35 H 1.08997 * 109.46543 * 179.97438 * 20 19 18 36 36 H 1.08995 * 109.47160 * 299.99697 * 20 19 18 37 37 H 1.09003 * 109.46982 * 56.96362 * 21 19 18 38 38 H 1.09002 * 109.46550 * 176.95717 * 21 19 18 39 39 H 1.08995 * 109.47614 * 296.95474 * 21 19 18 40 40 H 1.09000 * 109.47541 * 275.61830 * 23 22 18 41 41 H 1.08997 * 109.47167 * 35.62386 * 23 22 18 42 42 H 1.09004 * 109.46855 * 155.62465 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8294 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.1466 -2.2872 3.6035 10 1 3.1468 -0.1876 4.8163 11 1 1.1663 -1.5870 4.8159 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5486 -0.0262 -2.4212 15 6 1.8577 -0.8909 -3.6160 16 6 1.0304 -1.7745 -4.1995 17 7 1.6772 -2.3401 -5.2328 18 6 2.8890 -1.8434 -5.3102 19 7 3.8481 -2.1900 -6.2474 20 6 4.2315 -3.6015 -6.1109 21 6 3.3815 -1.9006 -7.6099 22 7 3.0437 -0.9302 -4.3140 23 6 4.2450 -0.1390 -4.0361 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.7089 1.1610 3.4845 28 1 3.8030 -1.3531 -0.3069 29 1 3.8208 -1.3115 -2.0861 30 1 3.9185 0.2052 -1.1592 31 1 0.4721 0.1326 -2.3563 32 1 2.0517 0.9348 -2.5280 33 1 0.0180 -1.9911 -3.8920 34 1 3.3548 -4.2321 -6.2585 35 1 4.9854 -3.8471 -6.8589 36 1 4.6387 -3.7727 -5.1144 37 1 3.1194 -0.8454 -7.6877 38 1 4.1738 -2.1316 -8.3219 39 1 2.5053 -2.5099 -7.8310 40 1 4.9309 -0.7231 -3.4226 41 1 4.7317 0.1245 -4.9751 42 1 3.9659 0.7703 -3.5037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425337373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:51 Heat of formation + Delta-G solvation = 73.023078 kcal Electronic energy + Delta-G solvation = -21080.308595 eV Core-core repulsion = 18096.782846 eV Total energy + Delta-G solvation = -2983.525748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.07917 -38.93012 -37.82686 -35.16893 -34.61346 -31.69886 -30.73345 -28.59038 -28.16890 -27.87812 -26.50796 -25.39109 -24.53877 -21.91659 -21.11189 -20.43425 -18.49534 -18.05010 -17.35431 -16.96267 -16.55457 -15.87467 -15.82271 -15.78249 -14.99302 -14.85759 -14.64825 -14.15262 -14.00779 -13.91568 -13.58183 -13.33707 -13.15148 -13.04256 -12.92380 -12.78061 -12.70378 -12.59267 -12.49325 -12.09451 -11.94002 -11.75540 -11.17401 -10.86452 -10.54799 -10.47595 -9.89373 -9.26484 -8.93688 -8.11154 -6.22472 0.93663 1.40771 1.43703 1.54441 1.59487 2.02209 2.42881 2.91542 3.17334 3.43153 3.74738 3.90579 4.00148 4.11042 4.30067 4.36086 4.40771 4.45229 4.56257 4.60530 4.64181 4.65332 4.69860 4.88644 4.90124 4.93655 4.95507 5.01142 5.06046 5.21208 5.23778 5.50193 5.56802 5.71628 5.73284 5.78591 5.82383 6.26578 6.35646 6.50199 6.67998 6.91066 7.03210 7.46609 8.94589 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.035017 B = 0.004384 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.412918 B = 6385.088250 C = 6647.510296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.218 3.782 3 H -0.030 1.030 4 C -0.518 4.518 5 H 0.056 0.944 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.957 3.043 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.539 5.539 13 C 0.042 3.958 14 C 0.130 3.870 15 C 0.003 3.997 16 C -0.023 4.023 17 N -0.532 5.532 18 C 0.358 3.642 19 N -0.473 5.473 20 C 0.039 3.961 21 C 0.039 3.961 22 N -0.445 5.445 23 C 0.075 3.925 24 H 0.036 0.964 25 H 0.061 0.939 26 H 0.031 0.969 27 H 0.262 0.738 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.016 0.984 31 H 0.100 0.900 32 H 0.034 0.966 33 H 0.174 0.826 34 H 0.031 0.969 35 H 0.109 0.891 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.032 0.968 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 -2.693 -17.225 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.111 3.889 3 H -0.013 1.013 4 C -0.556 4.556 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.783 3.217 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.207 1.207 12 N -0.264 5.264 13 C -0.106 4.106 14 C 0.002 3.998 15 C -0.113 4.113 16 C -0.172 4.172 17 N -0.256 5.256 18 C 0.007 3.993 19 N -0.198 5.198 20 C -0.109 4.109 21 C -0.108 4.108 22 N -0.130 5.130 23 C -0.067 4.067 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.034 0.966 31 H 0.118 0.882 32 H 0.052 0.948 33 H 0.191 0.809 34 H 0.050 0.950 35 H 0.127 0.873 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.051 0.949 40 H 0.100 0.900 41 H 0.125 0.875 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.230 -3.263 -17.489 19.204 hybrid contribution 0.027 0.709 1.600 1.750 sum 7.257 -2.554 -15.889 17.654 Atomic orbital electron populations 1.21692 0.97051 0.99418 1.00022 1.19067 0.92843 0.90316 0.86628 1.01261 1.21418 1.31086 1.12182 0.90957 0.92601 1.25640 0.95363 0.95733 1.01690 1.70009 1.37663 1.24108 1.23988 0.85526 0.78116 0.78594 0.79489 1.19477 1.20612 1.20676 1.62101 1.10257 1.52520 1.01547 1.22321 0.88085 0.98947 1.01254 1.20473 1.01856 0.92124 0.85374 1.21131 0.86829 1.04977 0.98327 1.22056 1.01279 0.98260 0.95644 1.70597 1.05275 1.27804 1.21880 1.21045 0.90954 0.94069 0.93276 1.58889 1.34550 1.23090 1.03258 1.22429 1.00725 0.84246 1.03457 1.22430 1.00658 1.01439 0.86249 1.45485 1.12393 1.31635 1.23457 1.22223 0.84856 0.95410 1.04185 0.94557 0.92033 0.95011 0.92913 0.92596 0.91890 0.96573 0.88208 0.94760 0.80894 0.95045 0.87271 0.92206 0.91817 0.87437 0.94889 0.89955 0.87530 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 8.76 71.98 0.63 -5.29 16 2 C 0.22 10.84 2.06 44.17 0.09 10.93 16 3 H -0.03 -1.64 8.14 -2.39 -0.02 -1.66 16 4 C -0.52 -28.16 7.93 25.60 0.20 -27.96 16 5 H 0.06 3.07 6.39 -2.91 -0.02 3.05 16 6 C 0.01 0.79 5.30 84.66 0.45 1.24 16 7 N -0.92 -51.94 11.32 21.45 0.24 -51.70 16 8 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 N -0.54 -22.76 4.61 -906.03 -4.18 -26.94 16 13 C 0.04 1.62 8.09 127.69 1.03 2.65 16 14 C 0.13 4.62 5.02 85.55 0.43 5.05 16 15 C 0.00 0.09 5.73 40.76 0.23 0.33 16 16 C -0.02 -0.80 11.76 83.42 0.98 0.18 16 17 N -0.53 -17.95 11.18 -197.94 -2.21 -20.16 16 18 C 0.36 10.52 6.33 260.37 1.65 12.17 16 19 N -0.47 -10.64 4.98 -756.55 -3.77 -14.40 16 20 C 0.04 0.75 9.51 127.69 1.21 1.96 16 21 C 0.04 0.70 9.48 127.69 1.21 1.91 16 22 N -0.44 -12.93 2.80 -534.53 -1.50 -14.43 16 23 C 0.07 1.66 9.18 127.77 1.17 2.83 16 24 H 0.04 1.49 6.20 -2.39 -0.01 1.48 16 25 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 26 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 28 H 0.06 2.36 6.23 -2.39 -0.01 2.34 16 29 H 0.06 2.14 4.43 -2.39 -0.01 2.13 16 30 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 3.50 5.83 -2.38 -0.01 3.49 16 32 H 0.03 1.17 7.31 -2.39 -0.02 1.15 16 33 H 0.17 5.47 8.06 -2.91 -0.02 5.44 16 34 H 0.03 0.69 8.12 -2.39 -0.02 0.67 16 35 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.03 0.67 8.13 -2.39 -0.02 0.65 16 40 H 0.08 1.77 6.86 -2.39 -0.02 1.75 16 41 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.08 1.84 7.12 -2.39 -0.02 1.83 16 Total: -1.00 -64.22 329.09 0.90 -63.32 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.99 Total: 12.87 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 9.30 Total: 6.02 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -11.41 Total: -127.64 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -64.22 0.90 -63.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425337373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.345 kcal (2) G-P(sol) polarization free energy of solvation -64.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds