Wall clock time and date at job start Mon Mar 30 2020 00:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46841 * 2 1 4 4 C 1.50692 * 109.47032 * 239.99808 * 2 1 3 5 5 H 1.07999 * 120.00373 * 356.26179 * 4 2 1 6 6 C 1.37879 * 120.00004 * 176.26401 * 4 2 1 7 7 N 1.31510 * 120.00212 * 175.82007 * 6 4 2 8 8 Si 1.86807 * 119.99748 * 355.81933 * 6 4 2 9 9 H 1.48499 * 109.47186 * 84.74456 * 8 6 4 10 10 H 1.48500 * 109.46818 * 204.74282 * 8 6 4 11 11 H 1.48497 * 109.46992 * 324.74047 * 8 6 4 12 12 N 1.46897 * 109.47168 * 119.99570 * 2 1 3 13 13 C 1.46902 * 110.99896 * 58.95421 * 12 2 1 14 14 C 1.46905 * 110.99950 * 295.00119 * 12 2 1 15 15 C 1.50702 * 109.46922 * 189.99942 * 14 12 2 16 16 C 1.34378 * 126.52916 * 95.02734 * 15 14 12 17 17 N 1.34383 * 108.32135 * 179.97438 * 16 15 14 18 18 C 1.31203 * 109.30667 * 0.02562 * 17 16 15 19 19 N 1.38498 * 125.79300 * 180.02562 * 18 17 16 20 20 C 1.46902 * 110.99785 * 298.41876 * 19 18 17 21 21 C 1.46902 * 111.00009 * 62.36758 * 19 18 17 22 22 N 1.36026 * 108.41267 * 359.97438 * 18 17 16 23 23 C 1.46505 * 126.48932 * 179.97438 * 22 18 17 24 24 H 1.09001 * 109.46863 * 175.51102 * 1 2 3 25 25 H 1.09002 * 109.46912 * 295.50951 * 1 2 3 26 26 H 1.08999 * 109.47223 * 55.51285 * 1 2 3 27 27 H 0.97005 * 120.00007 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47198 * 296.04631 * 13 12 2 29 29 H 1.08995 * 109.46903 * 56.04818 * 13 12 2 30 30 H 1.09001 * 109.46955 * 176.04475 * 13 12 2 31 31 H 1.08997 * 109.47194 * 70.00260 * 14 12 2 32 32 H 1.08998 * 109.47346 * 309.99772 * 14 12 2 33 33 H 1.08004 * 125.83732 * 359.70987 * 16 15 14 34 34 H 1.09000 * 109.47294 * 59.99706 * 20 19 18 35 35 H 1.09005 * 109.46970 * 180.02562 * 20 19 18 36 36 H 1.09004 * 109.46794 * 299.99976 * 20 19 18 37 37 H 1.08998 * 109.46639 * 58.89978 * 21 19 18 38 38 H 1.08997 * 109.46573 * 178.89599 * 21 19 18 39 39 H 1.08999 * 109.47231 * 298.89924 * 21 19 18 40 40 H 1.09004 * 109.46486 * 274.70671 * 23 22 18 41 41 H 1.08999 * 109.47132 * 34.70417 * 23 22 18 42 42 H 1.08995 * 109.47227 * 154.70957 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 1.3324 -1.1734 -1.9102 6 6 3.3855 -0.7695 -1.4882 7 7 3.8295 -1.4587 -2.5165 8 14 4.5881 0.1297 -0.3769 9 1 4.9130 -0.7238 0.7941 10 1 5.8314 0.4282 -1.1320 11 1 3.9759 1.3993 0.0904 12 7 2.0197 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6487 0.0394 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 3.5287 -0.1324 4.1280 17 7 3.8347 -0.9252 5.1690 18 6 2.9004 -1.8354 5.3103 19 7 2.8746 -2.8263 6.2776 20 6 4.0349 -3.7180 6.1488 21 6 2.8044 -2.2451 7.6249 22 7 1.9608 -1.6400 4.3464 23 6 0.7461 -2.4327 4.1403 24 1 -0.3633 -1.0245 -0.0804 25 1 -0.3633 0.4426 0.9275 26 1 -0.3633 0.5819 -0.8470 27 1 4.7816 -1.5005 -2.6976 28 1 0.4420 -2.0730 1.3348 29 1 1.8168 -2.5949 0.3320 30 1 1.9618 -2.5867 2.1060 31 1 0.5723 -0.0343 2.5726 32 1 1.9297 1.0872 2.3125 33 1 4.1173 0.7007 3.7730 34 1 4.9519 -3.1401 6.2647 35 1 3.9896 -4.4869 6.9201 36 1 4.0240 -4.1887 5.1657 37 1 1.9089 -1.6293 7.7087 38 1 2.7656 -3.0452 8.3641 39 1 3.6865 -1.6296 7.8016 40 1 0.9799 -3.3029 3.5268 41 1 0.3588 -2.7615 5.1046 42 1 -0.0041 -1.8236 3.6360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425337375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:53 Heat of formation + Delta-G solvation = 91.329633 kcal Electronic energy + Delta-G solvation = -21557.451356 eV Core-core repulsion = 18574.719440 eV Total energy + Delta-G solvation = -2982.731916 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.86281 -37.67164 -36.76364 -33.78657 -32.47125 -30.68412 -28.86191 -27.74851 -26.99819 -26.24380 -25.51455 -24.29573 -23.06760 -20.27859 -19.61922 -18.92498 -17.11479 -16.72177 -16.20577 -15.47726 -15.11320 -14.79007 -14.23602 -14.04230 -13.81569 -13.60163 -13.21627 -12.81512 -12.74012 -12.57081 -12.50291 -12.30374 -12.27032 -11.85914 -11.83362 -11.40746 -11.10867 -11.03946 -10.62157 -10.40763 -10.00631 -9.86012 -9.62331 -9.33372 -9.14114 -8.89270 -8.51249 -7.97343 -7.28435 -6.03184 -4.10224 2.16453 2.70528 3.29734 3.54275 3.59505 3.71912 3.90899 4.62807 4.82667 4.89842 4.90921 5.07966 5.23085 5.28179 5.33933 5.35960 5.47605 5.48517 5.53975 5.58792 5.70654 5.80011 5.93379 6.07348 6.08848 6.15406 6.20961 6.26967 6.35020 6.47463 6.62514 6.71834 6.77393 6.92977 7.05117 7.16925 7.61397 7.64776 7.96112 8.17030 8.26961 8.55671 8.96659 9.61925 11.06419 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.024595 B = 0.006165 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.191196 B = 4540.636913 C = 4939.997036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.046 0.954 4 C -0.515 4.515 5 H 0.071 0.929 6 C 0.086 3.914 7 N -0.898 5.898 8 Si 0.912 3.088 9 H -0.267 1.267 10 H -0.311 1.311 11 H -0.274 1.274 12 N -0.529 5.529 13 C 0.036 3.964 14 C 0.120 3.880 15 C 0.013 3.987 16 C -0.014 4.014 17 N -0.506 5.506 18 C 0.353 3.647 19 N -0.473 5.473 20 C 0.037 3.963 21 C 0.038 3.962 22 N -0.441 5.441 23 C 0.079 3.921 24 H 0.048 0.952 25 H 0.028 0.972 26 H 0.051 0.949 27 H 0.263 0.737 28 H 0.012 0.988 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.034 0.966 32 H 0.089 0.911 33 H 0.166 0.834 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.151 -1.786 17.465 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.065 3.935 3 H 0.064 0.936 4 C -0.553 4.553 5 H 0.089 0.911 6 C -0.118 4.118 7 N -0.535 5.535 8 Si 0.742 3.258 9 H -0.192 1.192 10 H -0.240 1.240 11 H -0.199 1.199 12 N -0.254 5.254 13 C -0.112 4.112 14 C -0.010 4.010 15 C -0.102 4.102 16 C -0.163 4.163 17 N -0.229 5.229 18 C 0.002 3.998 19 N -0.197 5.197 20 C -0.110 4.110 21 C -0.110 4.110 22 N -0.127 5.127 23 C -0.063 4.063 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.030 0.970 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.108 0.892 33 H 0.184 0.816 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.364 -2.160 17.737 18.394 hybrid contribution -0.218 0.649 0.107 0.693 sum -4.583 -1.511 17.844 18.485 Atomic orbital electron populations 1.22292 0.99962 1.00784 0.99248 1.19897 0.89766 0.95479 0.88373 0.93632 1.20823 0.92862 1.36692 1.04886 0.91105 1.24999 0.98637 0.93904 0.94289 1.69956 1.14659 1.40215 1.28700 0.86244 0.78438 0.80671 0.80440 1.19214 1.23962 1.19901 1.62776 1.59531 1.02318 1.00798 1.22301 0.95546 0.91026 1.02342 1.20560 0.95326 0.98020 0.87052 1.21343 0.99320 0.91895 0.97617 1.21811 0.95979 1.02539 0.95939 1.70574 1.25615 1.06539 1.20164 1.20587 0.88688 0.96733 0.93824 1.58661 1.43221 1.15748 1.02038 1.22374 0.90400 0.95433 1.02832 1.22359 1.01864 0.99425 0.87352 1.45287 1.19154 1.24266 1.23986 1.22028 0.85060 0.96026 1.03215 0.93296 0.95291 0.92959 0.92715 0.97012 0.89690 0.94057 0.94772 0.89232 0.81646 0.93681 0.90644 0.91264 0.91594 0.90667 0.93774 0.90333 0.89785 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 8.40 37.16 0.31 -2.80 16 2 C 0.17 3.80 1.70 -68.87 -0.12 3.68 16 3 H 0.05 1.06 6.76 -51.93 -0.35 0.71 16 4 C -0.51 -13.93 7.75 -34.44 -0.27 -14.20 16 5 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 6 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 7 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 8 Si 0.91 23.31 26.31 -169.99 -4.47 18.84 16 9 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.31 -8.07 7.11 56.52 0.40 -7.66 16 11 H -0.27 -6.68 6.55 56.52 0.37 -6.31 16 12 N -0.53 -11.04 2.89 -237.73 -0.69 -11.73 16 13 C 0.04 0.70 7.49 60.07 0.45 1.15 16 14 C 0.12 2.08 4.65 -4.97 -0.02 2.06 16 15 C 0.01 0.23 5.72 -81.33 -0.47 -0.23 16 16 C -0.01 -0.25 11.76 -17.80 -0.21 -0.46 16 17 N -0.51 -9.19 11.16 -13.92 -0.16 -9.35 16 18 C 0.35 5.67 6.33 -319.60 -2.02 3.65 16 19 N -0.47 -6.13 4.98 -190.47 -0.95 -7.08 16 20 C 0.04 0.43 9.50 60.07 0.57 1.00 16 21 C 0.04 0.40 9.50 60.07 0.57 0.97 16 22 N -0.44 -6.94 2.81 -120.30 -0.34 -7.27 16 23 C 0.08 0.97 9.17 59.85 0.55 1.52 16 24 H 0.05 0.93 6.73 -51.93 -0.35 0.58 16 25 H 0.03 0.47 6.54 -51.93 -0.34 0.13 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.01 0.20 6.42 -51.93 -0.33 -0.13 16 29 H 0.08 1.94 6.99 -51.93 -0.36 1.57 16 30 H 0.04 0.77 4.82 -51.93 -0.25 0.52 16 31 H 0.03 0.54 6.03 -51.93 -0.31 0.23 16 32 H 0.09 1.51 8.00 -51.93 -0.42 1.10 16 33 H 0.17 2.84 8.06 -52.48 -0.42 2.42 16 34 H 0.04 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 39 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 40 H 0.08 0.96 6.83 -51.93 -0.35 0.61 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.93 7.02 -51.93 -0.36 0.57 16 LS Contribution 325.85 15.07 4.91 4.91 Total: -1.00 -31.98 325.85 -8.49 -40.47 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.82 Total: -0.98 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.75 Total: -1.29 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -1.36 Total: -61.95 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.47 Total: 18.84 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.98 -8.49 -40.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425337375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.804 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds