Wall clock time and date at job start Mon Mar 30 2020 01:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46884 * 2 1 4 4 N 1.46895 * 109.47280 * 120.00332 * 2 1 3 5 5 C 1.46846 * 110.99969 * 293.04978 * 4 2 1 6 6 C 1.53042 * 109.52682 * 174.15797 * 5 4 2 7 7 C 1.53119 * 109.27351 * 59.18150 * 6 5 4 8 8 C 1.53119 * 109.16338 * 302.34991 * 7 6 5 9 9 C 1.46850 * 111.00171 * 168.84713 * 4 2 1 10 10 H 1.08997 * 109.45730 * 65.81975 * 9 4 2 11 11 C 1.53005 * 109.45927 * 305.85101 * 9 4 2 12 12 N 1.46500 * 109.47181 * 179.90648 * 11 9 4 13 13 C 1.36932 * 120.00270 * 89.62608 * 12 11 9 14 14 H 1.07996 * 119.99940 * 338.33452 * 13 12 11 15 15 C 1.38808 * 120.00227 * 158.33824 * 13 12 11 16 16 N 1.31615 * 120.00491 * 149.95085 * 15 13 12 17 17 Si 1.86807 * 119.99722 * 329.94574 * 15 13 12 18 18 H 1.48500 * 109.46736 * 92.28672 * 17 15 13 19 19 H 1.48497 * 109.47258 * 212.28570 * 17 15 13 20 20 H 1.48501 * 109.47406 * 332.28830 * 17 15 13 21 21 C 1.46498 * 119.99631 * 269.62214 * 12 11 9 22 22 C 1.53006 * 117.50033 * 9.07667 * 21 12 11 23 23 C 1.52998 * 117.50475 * 300.45358 * 21 12 11 24 24 H 1.09006 * 109.46985 * 186.35182 * 1 2 3 25 25 H 1.08997 * 109.47372 * 306.34779 * 1 2 3 26 26 H 1.09003 * 109.47401 * 66.35679 * 1 2 3 27 27 H 1.09005 * 109.47454 * 240.00261 * 2 1 3 28 28 H 1.09001 * 109.46843 * 173.51384 * 3 2 1 29 29 H 1.09002 * 109.47102 * 293.51230 * 3 2 1 30 30 H 1.08999 * 109.46920 * 53.51493 * 3 2 1 31 31 H 1.09000 * 109.46117 * 54.14636 * 5 4 2 32 32 H 1.09004 * 109.45981 * 294.17613 * 5 4 2 33 33 H 1.09001 * 109.50183 * 299.24462 * 6 5 4 34 34 H 1.08997 * 109.53456 * 179.13984 * 6 5 4 35 35 H 1.08994 * 109.52369 * 182.43805 * 7 6 5 36 36 H 1.09004 * 109.52552 * 62.25188 * 7 6 5 37 37 H 1.08998 * 109.50027 * 297.71089 * 8 7 6 38 38 H 1.09000 * 109.53933 * 177.61770 * 8 7 6 39 39 H 1.09000 * 109.47054 * 59.90544 * 11 9 4 40 40 H 1.09006 * 109.47124 * 299.90777 * 11 9 4 41 41 H 0.97002 * 120.00129 * 179.97438 * 16 15 13 42 42 H 1.09002 * 115.54814 * 154.77634 * 21 12 11 43 43 H 1.08993 * 117.49541 * 359.97438 * 22 21 12 44 44 H 1.08997 * 117.50020 * 145.01841 * 22 21 12 45 45 H 1.08994 * 117.49874 * 214.98344 * 23 21 12 46 46 H 1.08997 * 117.49591 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.6890 0.0623 2.4148 6 6 2.0829 -0.7548 3.6474 7 6 3.5847 -1.0493 3.5998 8 6 3.9101 -1.7933 2.3017 9 6 3.4632 -0.9461 1.1081 10 1 3.9997 0.0027 1.1150 11 6 3.7682 -1.6946 -0.1910 12 7 5.2086 -1.9458 -0.2833 13 6 5.7385 -3.0937 0.2423 14 1 5.2023 -3.6349 1.0077 15 6 6.9651 -3.5618 -0.2085 16 7 7.7490 -4.2404 0.6023 17 14 7.5031 -3.2288 -1.9661 18 1 8.2994 -1.9762 -2.0110 19 1 8.3325 -4.3604 -2.4528 20 1 6.3051 -3.0850 -2.8318 21 6 6.0819 -0.9687 -0.9381 22 6 5.4722 0.3832 -1.3148 23 6 5.7987 -0.6393 -2.4051 24 1 -0.3633 -1.0214 0.1137 25 1 -0.3634 0.6091 0.8277 26 1 -0.3634 0.4121 -0.9414 27 1 1.8934 -0.5138 -0.8900 28 1 3.1237 1.4447 0.1161 29 1 1.7745 1.9218 -0.9424 30 1 1.5849 1.9887 0.8263 31 1 0.6177 0.2616 2.4383 32 1 2.2340 1.0064 2.4154 33 1 1.5281 -1.6930 3.6545 34 1 1.8516 -0.1882 4.5494 35 1 3.8618 -1.6678 4.4534 36 1 4.1409 -0.1124 3.6318 37 1 3.3841 -2.7478 2.2877 38 1 4.9842 -1.9689 2.2415 39 1 3.4493 -1.0917 -1.0412 40 1 3.2327 -2.6440 -0.1976 41 1 8.6059 -4.5678 0.2870 42 1 7.1234 -0.9793 -0.6166 43 1 4.4212 0.5453 -1.0758 44 1 6.1125 1.2621 -1.2411 45 1 6.6538 -0.4330 -3.0488 46 1 4.9628 -1.1499 -2.8833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450337270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:36 Heat of formation + Delta-G solvation = 52.432093 kcal Electronic energy + Delta-G solvation = -22570.642377 eV Core-core repulsion = 19689.764080 eV Total energy + Delta-G solvation = -2880.878297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.61692 -37.33624 -34.86053 -33.44726 -32.00687 -30.11588 -29.71695 -27.13965 -26.23139 -23.94377 -23.12411 -21.80638 -21.65731 -20.20669 -19.69831 -18.43600 -17.10651 -16.07462 -15.33599 -15.24477 -14.34194 -14.13685 -14.00881 -13.83855 -13.57395 -13.29909 -13.03762 -12.63514 -12.55073 -12.07373 -12.00584 -11.80451 -11.56160 -11.35466 -11.30878 -11.08974 -10.92966 -10.81023 -10.71597 -10.46360 -10.29156 -10.21682 -9.91024 -9.74242 -9.56725 -9.44989 -9.27243 -8.43031 -7.88336 -6.96718 -5.99437 -3.25274 3.41517 3.55866 3.65714 4.12641 4.55359 4.70184 4.82914 4.98390 5.16072 5.19810 5.30307 5.36013 5.37902 5.44896 5.60812 5.65523 5.66757 5.68433 5.76638 5.79490 5.83630 5.87945 5.93796 6.02677 6.05418 6.10207 6.16542 6.19528 6.28147 6.32690 6.37133 6.39047 6.46387 6.52670 6.70738 6.71881 6.78060 6.87807 6.91857 7.20402 7.51860 7.61167 7.92491 8.30203 8.94443 9.73382 10.04431 11.14101 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.021426 B = 0.007417 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.492020 B = 3774.295874 C = 4580.265716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.068 3.932 3 C -0.186 4.186 4 N -0.526 5.526 5 C 0.057 3.943 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.105 4.105 9 C 0.071 3.929 10 H 0.036 0.964 11 C 0.151 3.849 12 N -0.563 5.563 13 C -0.270 4.270 14 H 0.096 0.904 15 C 0.033 3.967 16 N -0.891 5.891 17 Si 0.869 3.131 18 H -0.290 1.290 19 H -0.308 1.308 20 H -0.266 1.266 21 C 0.133 3.867 22 C -0.215 4.215 23 C -0.234 4.234 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.262 0.738 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.553 10.303 1.092 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.041 4.041 3 C -0.244 4.244 4 N -0.251 5.251 5 C -0.071 4.071 6 C -0.153 4.153 7 C -0.159 4.159 8 C -0.143 4.143 9 C -0.038 4.038 10 H 0.054 0.946 11 C 0.025 3.975 12 N -0.280 5.280 13 C -0.397 4.397 14 H 0.113 0.887 15 C -0.168 4.168 16 N -0.532 5.532 17 Si 0.698 3.302 18 H -0.218 1.218 19 H -0.236 1.236 20 H -0.191 1.191 21 C 0.023 3.977 22 C -0.254 4.254 23 C -0.275 4.275 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.129 0.871 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.656 9.670 1.206 15.193 hybrid contribution 0.848 1.070 -1.213 1.826 sum -10.808 10.740 -0.007 15.237 Atomic orbital electron populations 1.21823 0.94916 1.02205 1.00822 1.21792 0.95249 0.92387 0.94642 1.22509 1.01937 0.98356 1.01633 1.62176 1.15999 1.45940 1.01004 1.22044 0.99786 0.94848 0.90469 1.21586 0.97176 1.00315 0.96218 1.21618 0.95124 1.00138 0.99026 1.21660 1.03538 0.97729 0.91340 1.22278 0.85175 0.97989 0.98405 0.94586 1.20936 0.84648 0.98600 0.93348 1.43757 1.00967 1.18308 1.64931 1.18887 1.03483 1.00848 1.16473 0.88696 1.25148 0.96219 0.97560 0.97845 1.69993 1.09480 1.39750 1.33996 0.87051 0.78396 0.75753 0.88977 1.21763 1.23636 1.19075 1.21163 0.95337 0.89354 0.91883 1.23401 1.01543 0.94258 1.06212 1.23558 1.03292 1.05434 0.95258 0.91848 0.93161 0.92838 0.89417 0.92097 0.92624 0.92771 0.91466 0.95288 0.91481 0.92633 0.92415 0.93064 0.92093 0.88582 0.93982 0.91955 0.92813 0.87104 0.89130 0.89903 0.90189 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.99 37.16 0.33 -1.21 16 2 C 0.07 0.89 2.65 -67.71 -0.18 0.71 16 3 C -0.19 -2.27 8.22 37.16 0.31 -1.96 16 4 N -0.53 -7.74 4.43 -218.76 -0.97 -8.71 16 5 C 0.06 0.75 4.53 -3.83 -0.02 0.73 16 6 C -0.12 -1.52 6.09 -26.65 -0.16 -1.68 16 7 C -0.12 -1.85 6.00 -26.61 -0.16 -2.01 16 8 C -0.10 -1.92 4.29 -26.65 -0.11 -2.03 16 9 C 0.07 1.23 1.74 -67.72 -0.12 1.11 16 10 H 0.04 0.66 6.32 -51.93 -0.33 0.33 16 11 C 0.15 2.92 4.14 -4.04 -0.02 2.90 16 12 N -0.56 -12.77 2.46 -165.66 -0.41 -13.18 16 13 C -0.27 -7.15 8.32 -15.06 -0.13 -7.27 16 14 H 0.10 2.66 7.02 -52.49 -0.37 2.29 16 15 C 0.03 0.91 5.13 -17.43 -0.09 0.82 16 16 N -0.89 -26.52 13.97 55.49 0.78 -25.75 16 17 Si 0.87 22.05 23.68 -169.99 -4.03 18.02 16 18 H -0.29 -7.19 6.69 56.52 0.38 -6.81 16 19 H -0.31 -8.08 7.11 56.52 0.40 -7.67 16 20 H -0.27 -6.67 6.40 56.52 0.36 -6.31 16 21 C 0.13 2.86 4.01 -67.93 -0.27 2.59 16 22 C -0.22 -3.81 9.60 -26.73 -0.26 -4.07 16 23 C -0.23 -4.59 7.46 -26.73 -0.20 -4.79 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.52 6.75 -51.93 -0.35 0.17 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 1.25 5.60 -51.93 -0.29 0.96 16 28 H 0.06 0.84 5.07 -51.93 -0.26 0.57 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.62 6.85 -51.93 -0.36 0.27 16 31 H 0.07 0.80 6.39 -51.93 -0.33 0.47 16 32 H 0.03 0.39 6.72 -51.93 -0.35 0.04 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.10 2.10 6.18 -51.93 -0.32 1.78 16 39 H 0.04 0.77 4.24 -51.93 -0.22 0.55 16 40 H 0.06 1.28 8.04 -51.93 -0.42 0.87 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.11 2.62 6.34 -51.93 -0.33 2.29 16 43 H 0.09 1.52 4.38 -51.93 -0.23 1.29 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.08 1.51 8.01 -51.93 -0.42 1.10 16 46 H 0.09 1.73 8.10 -51.93 -0.42 1.31 16 LS Contribution 323.51 15.07 4.88 4.88 Total: -1.00 -27.73 323.51 -8.82 -36.54 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -7.99 Total: 4.37 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -1.07 Total: -16.17 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.60 Total: -47.64 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.03 Total: 18.02 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.73 -8.82 -36.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450337270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.976 kcal (2) G-P(sol) polarization free energy of solvation -27.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds