Wall clock time and date at job start Mon Mar 30 2020 01:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47150 * 2 1 4 4 N 1.46901 * 109.47031 * 120.00288 * 2 1 3 5 5 C 1.46848 * 110.98784 * 302.79035 * 4 2 1 6 6 C 1.53043 * 109.50992 * 185.85211 * 5 4 2 7 7 C 1.53112 * 109.27689 * 300.81401 * 6 5 4 8 8 C 1.53121 * 109.16197 * 57.65631 * 7 6 5 9 9 C 1.46836 * 110.99990 * 66.99398 * 4 2 1 10 10 H 1.09000 * 109.46468 * 294.16519 * 9 4 2 11 11 C 1.53001 * 109.46630 * 54.14430 * 9 4 2 12 12 N 1.46503 * 109.47265 * 181.63748 * 11 9 4 13 13 C 1.36941 * 119.99772 * 266.47169 * 12 11 9 14 14 H 1.08001 * 120.00059 * 336.89940 * 13 12 11 15 15 C 1.38806 * 119.99856 * 156.89834 * 13 12 11 16 16 N 1.31626 * 120.00286 * 355.16188 * 15 13 12 17 17 Si 1.86796 * 120.00263 * 175.16273 * 15 13 12 18 18 H 1.48499 * 109.47404 * 90.00051 * 17 15 13 19 19 H 1.48506 * 109.47466 * 210.00493 * 17 15 13 20 20 H 1.48507 * 109.46828 * 329.99672 * 17 15 13 21 21 C 1.46494 * 120.00208 * 86.47699 * 12 11 9 22 22 C 1.53004 * 117.49483 * 290.76888 * 21 12 11 23 23 C 1.52999 * 60.03340 * 107.47601 * 22 21 12 24 24 H 1.08996 * 109.47445 * 300.00244 * 1 2 3 25 25 H 1.09004 * 109.47329 * 60.00029 * 1 2 3 26 26 H 1.09002 * 109.47373 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46811 * 239.99969 * 2 1 3 28 28 H 1.09002 * 109.47282 * 177.39354 * 3 2 1 29 29 H 1.09004 * 109.47165 * 297.39314 * 3 2 1 30 30 H 1.09000 * 109.47116 * 57.39122 * 3 2 1 31 31 H 1.08998 * 109.47636 * 65.83355 * 5 4 2 32 32 H 1.09002 * 109.45450 * 305.85404 * 5 4 2 33 33 H 1.09001 * 109.50269 * 180.87505 * 6 5 4 34 34 H 1.09001 * 109.53731 * 60.77736 * 6 5 4 35 35 H 1.09000 * 109.52469 * 297.75306 * 7 6 5 36 36 H 1.09005 * 109.57301 * 177.59462 * 7 6 5 37 37 H 1.09005 * 109.50380 * 182.40138 * 8 7 6 38 38 H 1.09004 * 109.50327 * 62.28839 * 8 7 6 39 39 H 1.09000 * 109.46756 * 61.63755 * 11 9 4 40 40 H 1.08997 * 109.47068 * 301.63792 * 11 9 4 41 41 H 0.96998 * 120.00507 * 185.00909 * 16 15 13 42 42 H 1.08997 * 115.55385 * 145.09403 * 21 12 11 43 43 H 1.09004 * 117.49712 * 214.98187 * 22 21 12 44 44 H 1.08993 * 117.50309 * 359.97250 * 22 21 12 45 45 H 1.09002 * 117.49706 * 107.49773 * 23 22 21 46 46 H 1.08994 * 117.49700 * 252.52058 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.4949 -0.0661 2.4195 6 6 2.1379 -0.7180 3.6459 7 6 1.8250 -2.2168 3.6441 8 6 2.3386 -2.8359 2.3412 9 6 1.6899 -2.1227 1.1527 10 1 0.6082 -2.2477 1.2005 11 6 2.2155 -2.7248 -0.1519 12 7 1.8526 -4.1427 -0.2164 13 6 2.7303 -5.0950 0.2284 14 1 3.7871 -4.8767 0.2730 15 6 2.2618 -6.3410 0.6219 16 7 0.9672 -6.5759 0.6583 17 14 3.4685 -7.6844 1.0999 18 1 3.7466 -7.6047 2.5564 19 1 2.8844 -9.0116 0.7792 20 1 4.7340 -7.5050 0.3437 21 6 0.5508 -4.5417 -0.7570 22 6 -0.6918 -4.1954 0.0658 23 6 -0.3914 -3.4294 -1.2241 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1290 1.4429 0.0467 29 1 1.7153 1.9427 -0.9125 30 1 1.6390 1.9697 0.8657 31 1 0.4141 -0.2009 2.4613 32 1 1.7280 0.9986 2.4101 33 1 1.7368 -0.2636 4.5518 34 1 3.2175 -0.5715 3.6126 35 1 0.7474 -2.3641 3.7173 36 1 2.3162 -2.6934 4.4924 37 1 2.0810 -3.8948 2.3151 38 1 3.4214 -2.7229 2.2867 39 1 3.3005 -2.6255 -0.1866 40 1 1.7752 -2.1981 -0.9985 41 1 0.6370 -7.4208 1.0019 42 1 0.5403 -5.4781 -1.3146 43 1 -1.5200 -4.9040 0.0491 44 1 -0.5408 -3.6711 1.0093 45 1 -1.0219 -3.6339 -2.0894 46 1 -0.0422 -2.4012 -1.1291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450337271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:39 Heat of formation + Delta-G solvation = 50.007857 kcal Electronic energy + Delta-G solvation = -22773.069123 eV Core-core repulsion = 19892.085703 eV Total energy + Delta-G solvation = -2880.983420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.49783 -36.77642 -34.71980 -33.04773 -31.88151 -29.84725 -29.46644 -27.03375 -25.77380 -23.87600 -23.36663 -21.40743 -20.93216 -20.11003 -19.33697 -18.34711 -16.97731 -15.89497 -15.15562 -14.66130 -14.38133 -14.01399 -13.82714 -13.69829 -13.27402 -13.14617 -12.82117 -12.78030 -12.31045 -12.02825 -11.79412 -11.50689 -11.27239 -11.17084 -10.95959 -10.89986 -10.74776 -10.68523 -10.53844 -10.20447 -10.18193 -10.00380 -9.74055 -9.62166 -9.53002 -9.25194 -8.94349 -8.41682 -7.72711 -6.60544 -5.70711 -3.16965 3.39050 3.46539 3.47117 4.27326 4.52093 5.09224 5.20122 5.22154 5.28212 5.39956 5.44266 5.49666 5.56658 5.59050 5.73618 5.76997 5.80399 5.90107 5.98726 6.04096 6.10916 6.11487 6.18648 6.25680 6.29939 6.33417 6.38796 6.41601 6.44082 6.49412 6.63928 6.67769 6.69272 6.85143 6.95440 7.00802 7.16286 7.27050 7.36154 7.62007 7.65402 7.76495 7.85672 8.39552 9.27030 9.86404 10.36053 11.33849 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.020662 B = 0.007434 C = 0.006358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.842564 B = 3765.601313 C = 4402.560727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.071 3.929 3 C -0.141 4.141 4 N -0.528 5.528 5 C 0.054 3.946 6 C -0.114 4.114 7 C -0.122 4.122 8 C -0.100 4.100 9 C 0.065 3.935 10 H 0.041 0.959 11 C 0.153 3.847 12 N -0.565 5.565 13 C -0.250 4.250 14 H 0.071 0.929 15 C 0.008 3.992 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.280 1.280 21 C 0.216 3.784 22 C -0.187 4.187 23 C -0.257 4.257 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.042 0.958 41 H 0.252 0.748 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.637 12.182 1.031 12.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.038 4.038 3 C -0.199 4.199 4 N -0.253 5.253 5 C -0.074 4.074 6 C -0.152 4.152 7 C -0.159 4.159 8 C -0.138 4.138 9 C -0.045 4.045 10 H 0.059 0.941 11 C 0.026 3.974 12 N -0.283 5.283 13 C -0.380 4.380 14 H 0.089 0.911 15 C -0.190 4.190 16 N -0.543 5.543 17 Si 0.729 3.271 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.206 1.206 21 C 0.107 3.893 22 C -0.227 4.227 23 C -0.295 4.295 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.121 0.879 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.149 12.007 1.009 12.050 hybrid contribution -0.623 -0.756 0.607 1.153 sum -0.772 11.250 1.616 11.392 Atomic orbital electron populations 1.22572 0.98125 1.02809 1.01400 1.21744 0.92456 0.94852 0.94751 1.21850 1.01665 0.95526 1.00855 1.62253 1.58939 1.03437 1.00675 1.22060 0.96595 0.98089 0.90633 1.21572 1.01103 0.96221 0.96262 1.21619 1.00361 0.94913 0.99042 1.21529 0.99587 1.01353 0.91316 1.22554 0.98124 0.84862 0.98954 0.94110 1.20998 0.98345 0.85058 0.93037 1.43507 1.14918 0.99951 1.69921 1.19137 0.88877 0.92118 1.37835 0.91146 1.25030 0.95712 0.98524 0.99780 1.69978 1.10776 1.24196 1.49330 0.86340 0.80561 0.81801 0.78419 1.21513 1.21777 1.20564 1.20461 0.80830 0.92626 0.95390 1.22971 1.04430 1.02450 0.92848 1.23653 1.08194 0.98631 0.99072 0.92934 0.92755 0.91439 0.89450 0.92042 0.92870 0.93103 0.95396 0.91513 0.92797 0.91611 0.93122 0.92731 0.88636 0.92578 0.92903 0.94005 0.93694 0.87912 0.91175 0.90942 0.90896 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 8.36 37.16 0.31 -2.33 16 2 C 0.07 1.00 2.60 -67.71 -0.18 0.83 16 3 C -0.14 -1.66 8.98 37.16 0.33 -1.33 16 4 N -0.53 -8.39 4.46 -218.76 -0.98 -9.37 16 5 C 0.05 0.79 4.60 -3.83 -0.02 0.77 16 6 C -0.11 -1.63 6.09 -26.65 -0.16 -1.79 16 7 C -0.12 -2.03 6.00 -26.61 -0.16 -2.19 16 8 C -0.10 -1.97 4.84 -26.65 -0.13 -2.09 16 9 C 0.06 1.21 1.65 -67.73 -0.11 1.10 16 10 H 0.04 0.84 4.38 -51.93 -0.23 0.61 16 11 C 0.15 3.11 4.22 -4.04 -0.02 3.09 16 12 N -0.56 -13.38 2.60 -165.62 -0.43 -13.81 16 13 C -0.25 -6.48 7.87 -15.06 -0.12 -6.60 16 14 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 15 C 0.01 0.22 5.33 -17.43 -0.09 0.12 16 16 N -0.90 -24.65 10.31 55.49 0.57 -24.07 16 17 Si 0.90 21.23 29.56 -169.99 -5.02 16.21 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.22 5.06 4.43 -67.89 -0.30 4.76 16 22 C -0.19 -4.13 9.44 -26.73 -0.25 -4.38 16 23 C -0.26 -5.10 9.63 -26.69 -0.26 -5.36 16 24 H 0.05 0.70 6.49 -51.93 -0.34 0.36 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.09 4.55 -51.93 -0.24 0.85 16 27 H 0.09 1.33 5.77 -51.93 -0.30 1.03 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.57 6.47 -51.93 -0.34 0.23 16 31 H 0.03 0.42 6.60 -51.93 -0.34 0.08 16 32 H 0.07 0.86 6.15 -51.93 -0.32 0.54 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.10 2.26 6.55 -51.93 -0.34 1.92 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 1.11 7.99 -51.93 -0.41 0.70 16 40 H 0.04 0.81 4.29 -51.93 -0.22 0.59 16 41 H 0.25 6.86 8.32 -40.82 -0.34 6.52 16 42 H 0.10 2.68 7.37 -51.93 -0.38 2.30 16 43 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.07 1.68 6.25 -51.93 -0.32 1.36 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.08 1.54 3.95 -51.93 -0.21 1.33 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -25.96 326.66 -9.85 -35.81 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.76 Total: 5.73 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -1.15 Total: -15.42 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.84 Total: -47.25 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -25.96 -9.85 -35.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450337271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.819 kcal (2) G-P(sol) polarization free energy of solvation -25.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds