Wall clock time and date at job start Mon Mar 30 2020 01:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47150 * 2 1 4 4 N 1.46901 * 109.47031 * 120.00288 * 2 1 3 5 5 C 1.46848 * 110.98784 * 302.79035 * 4 2 1 6 6 C 1.53043 * 109.50992 * 185.85211 * 5 4 2 7 7 C 1.53112 * 109.27689 * 300.81401 * 6 5 4 8 8 C 1.53121 * 109.16197 * 57.65631 * 7 6 5 9 9 C 1.46836 * 110.99990 * 66.99398 * 4 2 1 10 10 H 1.09000 * 109.46468 * 294.16519 * 9 4 2 11 11 C 1.53001 * 109.46630 * 54.14430 * 9 4 2 12 12 N 1.46503 * 109.47265 * 181.63748 * 11 9 4 13 13 C 1.36941 * 119.99772 * 266.47169 * 12 11 9 14 14 H 1.08001 * 120.00059 * 336.89940 * 13 12 11 15 15 C 1.38806 * 119.99856 * 156.89834 * 13 12 11 16 16 N 1.31626 * 120.00286 * 355.16188 * 15 13 12 17 17 Si 1.86796 * 120.00263 * 175.16273 * 15 13 12 18 18 H 1.48499 * 109.47404 * 90.00051 * 17 15 13 19 19 H 1.48506 * 109.47466 * 210.00493 * 17 15 13 20 20 H 1.48507 * 109.46828 * 329.99672 * 17 15 13 21 21 C 1.46494 * 120.00208 * 86.47699 * 12 11 9 22 22 C 1.53004 * 117.49483 * 290.76888 * 21 12 11 23 23 C 1.52999 * 60.03340 * 107.47601 * 22 21 12 24 24 H 1.08996 * 109.47445 * 300.00244 * 1 2 3 25 25 H 1.09004 * 109.47329 * 60.00029 * 1 2 3 26 26 H 1.09002 * 109.47373 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46811 * 239.99969 * 2 1 3 28 28 H 1.09002 * 109.47282 * 177.39354 * 3 2 1 29 29 H 1.09004 * 109.47165 * 297.39314 * 3 2 1 30 30 H 1.09000 * 109.47116 * 57.39122 * 3 2 1 31 31 H 1.08998 * 109.47636 * 65.83355 * 5 4 2 32 32 H 1.09002 * 109.45450 * 305.85404 * 5 4 2 33 33 H 1.09001 * 109.50269 * 180.87505 * 6 5 4 34 34 H 1.09001 * 109.53731 * 60.77736 * 6 5 4 35 35 H 1.09000 * 109.52469 * 297.75306 * 7 6 5 36 36 H 1.09005 * 109.57301 * 177.59462 * 7 6 5 37 37 H 1.09005 * 109.50380 * 182.40138 * 8 7 6 38 38 H 1.09004 * 109.50327 * 62.28839 * 8 7 6 39 39 H 1.09000 * 109.46756 * 61.63755 * 11 9 4 40 40 H 1.08997 * 109.47068 * 301.63792 * 11 9 4 41 41 H 0.96998 * 120.00507 * 185.00909 * 16 15 13 42 42 H 1.08997 * 115.55385 * 145.09403 * 21 12 11 43 43 H 1.09004 * 117.49712 * 214.98187 * 22 21 12 44 44 H 1.08993 * 117.50309 * 359.97250 * 22 21 12 45 45 H 1.09002 * 117.49706 * 107.49773 * 23 22 21 46 46 H 1.08994 * 117.49700 * 252.52058 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.4949 -0.0661 2.4195 6 6 2.1379 -0.7180 3.6459 7 6 1.8250 -2.2168 3.6441 8 6 2.3386 -2.8359 2.3412 9 6 1.6899 -2.1227 1.1527 10 1 0.6082 -2.2477 1.2005 11 6 2.2155 -2.7248 -0.1519 12 7 1.8526 -4.1427 -0.2164 13 6 2.7303 -5.0950 0.2284 14 1 3.7871 -4.8767 0.2730 15 6 2.2618 -6.3410 0.6219 16 7 0.9672 -6.5759 0.6583 17 14 3.4685 -7.6844 1.0999 18 1 3.7466 -7.6047 2.5564 19 1 2.8844 -9.0116 0.7792 20 1 4.7340 -7.5050 0.3437 21 6 0.5508 -4.5417 -0.7570 22 6 -0.6918 -4.1954 0.0658 23 6 -0.3914 -3.4294 -1.2241 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1290 1.4429 0.0467 29 1 1.7153 1.9427 -0.9125 30 1 1.6390 1.9697 0.8657 31 1 0.4141 -0.2009 2.4613 32 1 1.7280 0.9986 2.4101 33 1 1.7368 -0.2636 4.5518 34 1 3.2175 -0.5715 3.6126 35 1 0.7474 -2.3641 3.7173 36 1 2.3162 -2.6934 4.4924 37 1 2.0810 -3.8948 2.3151 38 1 3.4214 -2.7229 2.2867 39 1 3.3005 -2.6255 -0.1866 40 1 1.7752 -2.1981 -0.9985 41 1 0.6370 -7.4208 1.0019 42 1 0.5403 -5.4781 -1.3146 43 1 -1.5200 -4.9040 0.0491 44 1 -0.5408 -3.6711 1.0093 45 1 -1.0219 -3.6339 -2.0894 46 1 -0.0422 -2.4012 -1.1291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450337271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:38 Heat of formation + Delta-G solvation = 36.672953 kcal Electronic energy + Delta-G solvation = -22773.647368 eV Core-core repulsion = 19892.085703 eV Total energy + Delta-G solvation = -2881.561664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.87931 -38.48793 -35.98005 -34.86291 -33.61760 -31.29310 -30.93364 -28.07166 -27.47279 -25.37042 -25.00719 -23.02125 -22.56879 -21.42217 -21.04656 -19.75711 -18.84129 -17.15394 -16.80770 -16.49852 -15.93242 -15.39539 -15.28871 -15.14404 -14.75776 -14.58125 -14.36340 -14.06425 -13.64167 -13.58613 -13.10169 -12.89808 -12.80314 -12.76713 -12.54857 -12.51216 -12.17265 -12.08832 -11.97572 -11.90877 -11.81968 -11.53301 -11.43890 -11.23241 -10.97694 -10.85797 -10.67155 -10.39297 -9.02564 -8.52051 -7.73424 -5.20059 1.47408 1.49596 1.56491 2.52617 3.01757 3.31072 3.58613 3.68667 3.96297 4.02473 4.06119 4.12456 4.29484 4.38331 4.44574 4.47991 4.53878 4.55879 4.60551 4.71377 4.76457 4.81857 4.84719 4.88674 4.92975 4.96986 5.01772 5.09687 5.12874 5.16408 5.20237 5.26154 5.30390 5.40527 5.41095 5.47856 5.53703 5.58949 5.61585 5.71352 5.83156 6.33400 6.42008 6.44309 7.25852 7.94063 8.38413 9.28816 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.020662 B = 0.007434 C = 0.006358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.842564 B = 3765.601313 C = 4402.560727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.066 3.934 3 C -0.133 4.133 4 N -0.531 5.531 5 C 0.054 3.946 6 C -0.107 4.107 7 C -0.118 4.118 8 C -0.095 4.095 9 C 0.083 3.917 10 H 0.023 0.977 11 C 0.157 3.843 12 N -0.576 5.576 13 C -0.249 4.249 14 H 0.066 0.934 15 C -0.038 4.038 16 N -0.921 5.921 17 Si 0.953 3.047 18 H -0.290 1.290 19 H -0.297 1.297 20 H -0.274 1.274 21 C 0.192 3.808 22 C -0.185 4.185 23 C -0.216 4.216 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.024 0.976 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.055 0.945 41 H 0.245 0.755 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.538 14.865 1.057 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.042 4.042 3 C -0.191 4.191 4 N -0.256 5.256 5 C -0.074 4.074 6 C -0.145 4.145 7 C -0.156 4.156 8 C -0.133 4.133 9 C -0.027 4.027 10 H 0.041 0.959 11 C 0.031 3.969 12 N -0.295 5.295 13 C -0.379 4.379 14 H 0.084 0.916 15 C -0.234 4.234 16 N -0.566 5.566 17 Si 0.783 3.217 18 H -0.217 1.217 19 H -0.224 1.224 20 H -0.199 1.199 21 C 0.084 3.916 22 C -0.225 4.225 23 C -0.254 4.254 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.040 14.724 1.027 14.760 hybrid contribution -0.636 -1.540 0.565 1.759 sum -0.676 13.184 1.592 13.297 Atomic orbital electron populations 1.22497 0.97632 1.01455 1.02677 1.21841 0.92842 0.96182 0.93317 1.21785 1.01465 0.93555 1.02275 1.62224 1.59330 1.01769 1.02284 1.22156 0.96264 0.99281 0.89681 1.21548 1.01395 0.94009 0.97551 1.21570 0.99610 0.97000 0.97404 1.21354 0.99109 0.99030 0.93789 1.22108 0.96535 0.86880 0.97197 0.95879 1.21015 0.97788 0.83568 0.94567 1.43588 1.14776 1.00998 1.70116 1.19284 0.89094 0.92750 1.36778 0.91646 1.25583 0.96949 1.00253 1.00623 1.70139 1.11955 1.24067 1.50487 0.85476 0.79086 0.79323 0.77827 1.21718 1.22364 1.19888 1.20245 0.81422 0.93205 0.96732 1.22783 1.03540 1.02876 0.93348 1.23635 1.05476 0.98070 0.98266 0.92245 0.90922 0.93984 0.90682 0.92274 0.91097 0.92108 0.95827 0.88948 0.90115 0.91422 0.94020 0.92195 0.93314 0.93409 0.93890 0.92741 0.94555 0.91140 0.91760 0.92308 0.88653 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.60 8.36 71.98 0.60 -3.99 16 2 C 0.07 1.71 2.60 44.92 0.12 1.83 16 3 C -0.13 -2.64 8.98 71.98 0.65 -1.99 16 4 N -0.53 -15.90 4.46 -846.03 -3.78 -19.68 16 5 C 0.05 1.40 4.60 86.33 0.40 1.80 16 6 C -0.11 -2.80 6.09 30.65 0.19 -2.61 16 7 C -0.12 -3.88 6.00 30.67 0.18 -3.70 16 8 C -0.09 -3.79 4.84 30.65 0.15 -3.64 16 9 C 0.08 3.09 1.65 44.94 0.07 3.16 16 10 H 0.02 0.96 4.38 -2.39 -0.01 0.95 16 11 C 0.16 6.40 4.22 86.38 0.36 6.77 16 12 N -0.58 -27.98 2.60 -677.90 -1.77 -29.74 16 13 C -0.25 -13.28 7.87 84.03 0.66 -12.62 16 14 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 15 C -0.04 -2.08 5.33 84.86 0.45 -1.63 16 16 N -0.92 -52.44 10.31 21.65 0.22 -52.22 16 17 Si 0.95 44.89 29.56 68.60 2.03 46.91 16 18 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 21 C 0.19 9.23 4.43 45.02 0.20 9.43 16 22 C -0.19 -8.33 9.44 30.60 0.29 -8.04 16 23 C -0.22 -8.38 9.63 30.62 0.29 -8.08 16 24 H 0.06 1.40 6.49 -2.39 -0.02 1.38 16 25 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.04 1.27 4.55 -2.39 -0.01 1.26 16 27 H 0.08 2.12 5.77 -2.39 -0.01 2.11 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.09 6.47 -2.39 -0.02 1.08 16 31 H 0.02 0.65 6.60 -2.39 -0.02 0.63 16 32 H 0.09 1.98 6.15 -2.39 -0.01 1.97 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.05 2.40 6.55 -2.38 -0.02 2.39 16 38 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.04 1.82 7.99 -2.39 -0.02 1.80 16 40 H 0.05 2.07 4.29 -2.39 -0.01 2.06 16 41 H 0.24 13.81 8.32 -92.71 -0.77 13.04 16 42 H 0.07 3.83 7.37 -2.39 -0.02 3.81 16 43 H 0.06 2.92 8.14 -2.38 -0.02 2.90 16 44 H 0.06 2.80 6.25 -2.39 -0.01 2.79 16 45 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 46 H 0.10 3.45 3.95 -2.39 -0.01 3.44 16 Total: -1.00 -57.62 326.66 2.28 -55.35 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.95 Total: 22.71 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 4.62 Total: -23.34 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -5.32 Total: -101.64 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -57.62 2.28 -55.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450337271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.020 kcal (2) G-P(sol) polarization free energy of solvation -57.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds