Wall clock time and date at job start Mon Mar 30 2020 01:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 C 1.50703 * 109.47517 * 239.99551 * 2 1 3 5 5 H 1.07996 * 120.00347 * 239.99775 * 4 2 1 6 6 C 1.37878 * 119.99572 * 60.00185 * 4 2 1 7 7 N 1.31514 * 120.00080 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99540 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47225 * 90.00190 * 8 6 4 10 10 H 1.48504 * 109.46811 * 209.99548 * 8 6 4 11 11 H 1.48497 * 109.47381 * 329.99682 * 8 6 4 12 12 C 1.53005 * 109.47138 * 119.99730 * 2 1 3 13 13 N 1.46901 * 109.46875 * 300.00114 * 12 2 1 14 14 C 1.46896 * 110.99816 * 179.97438 * 13 12 2 15 15 C 1.53099 * 109.52892 * 274.67761 * 14 13 12 16 16 C 1.53034 * 109.29509 * 182.43633 * 15 14 13 17 17 N 1.46847 * 109.51345 * 59.18740 * 16 15 14 18 18 C 1.46898 * 110.99897 * 174.16738 * 17 16 15 19 19 C 1.52999 * 117.50000 * 248.61536 * 18 17 16 20 20 C 1.52999 * 60.00272 * 252.51270 * 19 18 17 21 21 C 1.46854 * 111.19790 * 298.26320 * 17 16 15 22 22 C 1.53039 * 109.52227 * 61.74204 * 21 17 16 23 23 H 1.08996 * 109.47657 * 299.99881 * 1 2 3 24 24 H 1.08994 * 109.46902 * 60.00957 * 1 2 3 25 25 H 1.09010 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46883 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.46520 * 299.99276 * 3 2 1 28 28 H 1.08996 * 109.46827 * 59.99611 * 3 2 1 29 29 H 0.96998 * 119.99473 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47204 * 180.02562 * 12 2 1 31 31 H 1.09000 * 109.46917 * 59.99978 * 12 2 1 32 32 H 1.00899 * 111.00627 * 303.95477 * 13 12 2 33 33 H 1.09002 * 109.52358 * 34.87484 * 14 13 12 34 34 H 1.09007 * 109.48839 * 62.49275 * 15 14 13 35 35 H 1.09009 * 109.50682 * 302.39061 * 15 14 13 36 36 H 1.09002 * 109.46271 * 299.17460 * 16 15 14 37 37 H 1.08994 * 109.46242 * 179.19760 * 16 15 14 38 38 H 1.08997 * 115.55242 * 34.33050 * 18 17 16 39 39 H 1.08999 * 117.49599 * 0.02562 * 19 18 17 40 40 H 1.08995 * 117.49715 * 145.01671 * 19 18 17 41 41 H 1.09000 * 117.49718 * 252.51107 * 20 19 18 42 42 H 1.09002 * 117.49753 * 107.49143 * 20 19 18 43 43 H 1.08993 * 109.46229 * 181.76227 * 21 17 16 44 44 H 1.09008 * 109.45803 * 301.73838 * 21 17 16 45 45 H 1.08994 * 109.50227 * 60.75933 * 22 21 17 46 46 H 1.08998 * 109.50241 * 180.83988 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3216 -1.1206 -4.0078 9 1 1.3429 -2.1619 -4.4118 10 1 2.4868 -0.1416 -5.1122 11 1 3.6295 -1.7585 -3.7120 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0208 -0.6950 3.6703 15 6 1.0667 -1.8370 4.0303 16 6 1.5275 -2.4883 5.3362 17 7 1.5424 -1.4835 6.4069 18 6 1.8464 -2.1013 7.7044 19 6 0.7255 -2.1480 8.7447 20 6 1.8997 -1.1846 8.9283 21 6 2.4872 -0.4003 6.1055 22 6 2.0549 0.3131 4.8224 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6765 1.9563 0.8899 29 1 0.7083 1.1606 -3.4844 30 1 3.1300 -0.7208 1.2496 31 1 1.6766 -1.7489 1.2493 32 1 1.8196 0.9437 2.4402 33 1 3.0218 -1.0937 3.5054 34 1 1.0706 -2.5794 3.2321 35 1 0.0582 -1.4427 4.1562 36 1 2.5305 -2.8945 5.2052 37 1 0.8418 -3.2927 5.6025 38 1 2.5407 -2.9411 7.6742 39 1 -0.2377 -1.7207 8.4660 40 1 0.6819 -3.0188 9.3988 41 1 2.6287 -1.4215 9.7032 42 1 1.7091 -0.1230 8.7706 43 1 2.4987 0.3116 6.9307 44 1 3.4857 -0.8164 5.9708 45 1 1.0621 0.7411 4.9609 46 1 2.7645 1.1073 4.5909 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459729663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:13 Heat of formation + Delta-G solvation = 20.200421 kcal Electronic energy + Delta-G solvation = -21029.113917 eV Core-core repulsion = 18146.837950 eV Total energy + Delta-G solvation = -2882.275967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.44196 -37.31828 -35.85815 -33.53735 -31.30238 -30.79511 -29.05560 -25.54264 -25.20699 -24.50575 -23.30626 -22.57739 -22.06530 -20.70445 -19.57169 -18.33614 -16.84928 -15.94158 -15.39106 -15.05154 -14.69656 -14.55779 -14.18027 -14.07153 -13.61730 -13.10044 -12.74448 -12.55606 -12.37662 -12.15122 -11.92997 -11.67432 -11.34108 -11.16255 -11.08739 -10.95589 -10.72393 -10.64450 -10.50916 -10.46676 -10.36074 -10.12889 -10.03558 -9.99958 -9.34264 -9.00046 -8.58426 -8.37939 -8.26562 -7.64507 -5.88747 -3.99070 3.32615 3.39452 3.42280 3.55079 3.68262 4.44947 4.68839 4.71787 4.75996 4.87261 4.94532 5.07604 5.29994 5.34434 5.36593 5.42820 5.45510 5.49564 5.62838 5.72782 5.78662 5.85050 5.90234 5.99196 6.07375 6.19287 6.35086 6.39310 6.44040 6.63831 6.76597 6.93367 7.01965 7.08000 7.12165 7.20860 7.43275 7.52351 7.78901 7.79965 7.88283 8.04810 8.25169 8.38687 8.59273 9.02595 9.65801 11.11715 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.045769 B = 0.003503 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.616702 B = 7991.856493 C = 8183.692796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.069 3.931 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.077 3.923 13 N -0.681 5.681 14 C 0.086 3.914 15 C -0.102 4.102 16 C 0.061 3.939 17 N -0.509 5.509 18 C 0.005 3.995 19 C -0.163 4.163 20 C -0.177 4.177 21 C 0.062 3.938 22 C -0.118 4.118 23 H 0.020 0.980 24 H 0.073 0.927 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.083 0.917 28 H 0.011 0.989 29 H 0.258 0.742 30 H 0.010 0.990 31 H 0.055 0.945 32 H 0.337 0.663 33 H 0.031 0.969 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.030 0.970 45 H 0.079 0.921 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.962 -3.188 19.396 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.545 4.545 5 H 0.069 0.931 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.052 4.052 13 N -0.313 5.313 14 C -0.024 4.024 15 C -0.141 4.141 16 C -0.067 4.067 17 N -0.234 5.234 18 C -0.104 4.104 19 C -0.201 4.201 20 C -0.215 4.215 21 C -0.066 4.066 22 C -0.156 4.156 23 H 0.039 0.961 24 H 0.092 0.908 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.101 0.899 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.157 0.843 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.092 0.908 44 H 0.048 0.952 45 H 0.098 0.902 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.821 -3.182 19.245 19.524 hybrid contribution 2.183 -0.673 -0.966 2.480 sum 3.004 -3.855 18.279 18.922 Atomic orbital electron populations 1.21628 0.97380 0.98523 1.00055 1.18087 0.93203 0.91913 0.89966 1.21831 0.97620 0.99251 1.00281 1.21126 1.31036 1.11808 0.90565 0.93085 1.24884 0.95069 0.94965 0.98659 1.69838 1.36842 1.22824 1.22856 0.86671 0.79171 0.79472 0.83081 1.20792 1.21339 1.20145 1.22175 0.95173 0.97838 0.89977 1.60601 1.63683 1.06118 1.00918 1.21505 0.95800 0.94652 0.90480 1.21561 1.00547 0.97405 0.94551 1.22106 0.99534 0.93775 0.91245 1.61733 1.50053 1.11071 1.00555 1.22407 1.01550 0.99865 0.86612 1.23051 0.94736 1.01254 1.01079 1.23049 1.01769 0.97677 0.98992 1.22036 0.93135 0.93507 0.97900 1.21783 1.02668 0.97636 0.93538 0.96062 0.90819 0.96386 0.96321 0.89851 0.97022 0.93220 0.97165 0.92668 0.84337 0.95062 0.91441 0.90425 0.95244 0.90767 0.89571 0.88108 0.89005 0.88902 0.88325 0.90803 0.95176 0.90248 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 8.09 37.16 0.30 -2.62 16 2 C 0.07 1.68 0.57 -155.65 -0.09 1.59 16 3 C -0.13 -3.15 7.92 37.16 0.29 -2.85 16 4 C -0.51 -13.80 8.01 -34.44 -0.28 -14.07 16 5 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 6 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 7 N -0.88 -24.72 9.35 55.43 0.52 -24.20 16 8 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.08 1.63 4.39 -3.82 -0.02 1.61 16 13 N -0.68 -12.27 5.52 -106.60 -0.59 -12.85 16 14 C 0.09 1.30 2.56 -67.60 -0.17 1.12 16 15 C -0.10 -1.46 5.59 -26.66 -0.15 -1.61 16 16 C 0.06 0.75 5.43 -3.84 -0.02 0.73 16 17 N -0.51 -5.94 4.80 -226.69 -1.09 -7.03 16 18 C 0.00 0.05 5.30 -67.71 -0.36 -0.31 16 19 C -0.16 -1.41 10.46 -26.73 -0.28 -1.69 16 20 C -0.18 -1.48 9.70 -26.73 -0.26 -1.74 16 21 C 0.06 0.71 5.34 -3.83 -0.02 0.69 16 22 C -0.12 -1.51 5.36 -26.65 -0.14 -1.65 16 23 H 0.02 0.48 7.60 -51.93 -0.39 0.08 16 24 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 25 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 28 H 0.01 0.24 6.57 -51.93 -0.34 -0.11 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.01 0.22 8.06 -51.93 -0.42 -0.20 16 31 H 0.05 1.20 7.51 -51.93 -0.39 0.81 16 32 H 0.34 6.01 6.40 -39.29 -0.25 5.76 16 33 H 0.03 0.50 7.80 -51.93 -0.41 0.10 16 34 H 0.07 1.03 7.54 -51.93 -0.39 0.63 16 35 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 36 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 38 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.85 7.23 -51.93 -0.38 0.48 16 43 H 0.07 0.76 6.68 -51.93 -0.35 0.41 16 44 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -27.34 345.61 -10.81 -38.15 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -8.56 Total: 3.58 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -1.28 Total: -19.12 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -1.16 Total: -44.08 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.34 -10.81 -38.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.354 kcal (2) G-P(sol) polarization free energy of solvation -27.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds