Wall clock time and date at job start Mon Mar 30 2020 00:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99921 * 2 1 4 4 C 1.53001 * 112.85126 * 63.56610 * 3 2 1 5 5 C 1.52998 * 109.47181 * 54.01581 * 4 3 2 6 6 N 1.46896 * 109.47341 * 174.87850 * 5 4 3 7 7 C 1.46898 * 111.00062 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.47388 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.47160 * 305.00590 * 8 7 6 10 10 C 1.47207 * 109.46856 * 65.00128 * 8 7 6 11 11 N 7.23094 * 74.22951 * 66.82001 * 2 1 3 12 12 C 1.53002 * 109.47270 * 185.00130 * 8 7 6 13 13 C 1.50698 * 109.46721 * 175.00133 * 12 8 7 14 14 H 1.07995 * 120.00421 * 0.02562 * 13 12 8 15 15 C 1.37876 * 119.99661 * 179.97438 * 13 12 8 16 16 N 1.31514 * 120.00202 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00205 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47411 * 89.99643 * 17 15 13 19 19 H 1.48497 * 109.47367 * 209.99860 * 17 15 13 20 20 H 1.48508 * 109.47073 * 330.00007 * 17 15 13 21 21 C 1.53774 * 113.69521 * 194.83742 * 3 2 1 22 22 C 1.53783 * 87.08408 * 89.12405 * 21 3 2 23 23 C 1.53783 * 87.07831 * 25.43531 * 22 21 3 24 24 H 1.09000 * 109.46900 * 295.23176 * 1 2 3 25 25 H 1.08990 * 109.47364 * 55.23877 * 1 2 3 26 26 H 1.09003 * 109.46765 * 175.23792 * 1 2 3 27 27 H 1.09005 * 109.47185 * 294.02081 * 4 3 2 28 28 H 1.08998 * 109.47433 * 174.01696 * 4 3 2 29 29 H 1.09003 * 109.46761 * 54.88307 * 5 4 3 30 30 H 1.08999 * 109.47283 * 294.88166 * 5 4 3 31 31 H 1.00900 * 110.99559 * 56.05118 * 6 5 4 32 32 H 1.09003 * 109.47369 * 60.00134 * 7 6 5 33 33 H 1.08999 * 109.47412 * 300.00095 * 7 6 5 34 34 H 1.08998 * 109.47014 * 55.00214 * 12 8 7 35 35 H 1.08998 * 109.46712 * 295.00034 * 12 8 7 36 36 H 0.97001 * 120.00704 * 180.02562 * 16 15 13 37 37 H 1.09005 * 113.61828 * 203.67514 * 21 3 2 38 38 H 1.09005 * 113.61314 * 334.58006 * 21 3 2 39 39 H 1.09000 * 113.61272 * 270.89158 * 22 21 3 40 40 H 1.08994 * 113.69130 * 139.98913 * 22 21 3 41 41 H 1.09001 * 113.61369 * 220.02148 * 23 22 21 42 42 H 1.09003 * 113.61643 * 89.11329 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6785 2.1035 1.2625 5 6 2.0712 1.2906 2.4977 6 7 1.8672 2.1034 3.7041 7 6 2.2354 1.3536 4.9125 8 6 2.0093 2.2307 6.1457 9 1 2.5563 3.1665 6.0312 10 6 0.5723 2.5166 6.2876 11 7 -0.5362 2.7391 6.3970 12 6 2.5088 1.4970 7.3919 13 6 2.3996 2.4071 8.5881 14 1 2.0123 3.4084 8.4713 15 6 2.7932 1.9610 9.8319 16 7 2.6975 2.7550 10.8759 17 14 3.4626 0.2288 10.0342 18 1 4.9356 0.2423 9.8472 19 1 3.1410 -0.2703 11.3953 20 1 2.8432 -0.6627 9.0208 21 6 3.5051 1.3164 -0.3606 22 6 3.0693 1.4524 -1.8291 23 6 1.7708 2.0864 -1.3030 24 1 -0.3633 0.4381 0.9296 25 1 -0.3633 0.5859 -0.8442 26 1 -0.3633 -1.0242 -0.0853 27 1 0.6090 2.3122 1.2900 28 1 2.2318 3.0426 1.2547 29 1 3.1205 1.0043 2.4256 30 1 1.4532 0.3945 2.5545 31 1 0.9160 2.4352 3.7599 32 1 3.2859 1.0681 4.8570 33 1 1.6189 0.4578 4.9863 34 1 3.5499 1.2070 7.2499 35 1 1.9026 0.6063 7.5565 36 1 2.9747 2.4414 11.7510 37 1 4.0395 2.1874 0.0188 38 1 4.0140 0.3777 -0.1414 39 1 2.9168 0.4962 -2.3296 40 1 3.6873 2.1392 -2.4074 41 1 0.8795 1.7693 -1.8445 42 1 1.8310 3.1679 -1.1812 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515055034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:24 Heat of formation + Delta-G solvation = -11.719832 kcal Electronic energy + Delta-G solvation = -19899.080288 eV Core-core repulsion = 16879.587060 eV Total energy + Delta-G solvation = -3019.493228 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33372 -37.56208 -35.84148 -35.41626 -33.72350 -32.14293 -30.23993 -27.40736 -26.93758 -25.81252 -24.16626 -22.52719 -21.79131 -21.21003 -19.70330 -16.99648 -16.82040 -16.53324 -16.19090 -15.66628 -15.50585 -14.84265 -14.55735 -14.37318 -13.86460 -13.72826 -13.26729 -12.93940 -12.77304 -12.58896 -12.45096 -12.23275 -12.09496 -11.92119 -11.47120 -11.41215 -11.25460 -11.17667 -11.09338 -11.06107 -10.80886 -10.41961 -10.29776 -9.96837 -9.81231 -9.54382 -9.31940 -8.61405 -8.38275 -6.10344 -4.11017 3.26438 3.35168 3.36248 3.37139 3.52410 3.56762 4.03820 4.27779 4.32994 4.38733 4.52655 4.69102 4.71173 5.02755 5.04109 5.12412 5.16758 5.19959 5.24354 5.38069 5.41761 5.43208 5.47251 5.57062 5.60906 5.62219 5.71202 5.86327 5.94591 5.99172 6.01983 6.04779 6.21031 6.36716 6.93784 6.98435 7.04177 7.14973 7.38028 7.64124 8.33218 8.42732 8.93157 9.49516 11.02788 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030939 B = 0.003327 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.787425 B = 8413.781862 C = 8674.810516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.092 3.908 4 C -0.132 4.132 5 C 0.065 3.935 6 N -0.693 5.693 7 C 0.066 3.934 8 C 0.016 3.984 9 H 0.116 0.884 10 C 0.239 3.761 11 N -0.470 5.470 12 C -0.004 4.004 13 C -0.528 4.528 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.878 3.122 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.264 1.264 21 C -0.123 4.123 22 C -0.136 4.136 23 C -0.165 4.165 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.337 0.663 32 H 0.091 0.909 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.023 0.977 36 H 0.265 0.735 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.138 -4.653 -25.402 25.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.280 6.280 3 C 0.052 3.948 4 C -0.170 4.170 5 C -0.064 4.064 6 N -0.323 5.323 7 C -0.064 4.064 8 C -0.005 4.005 9 H 0.134 0.866 10 C -0.078 4.078 11 N -0.146 5.146 12 C -0.043 4.043 13 C -0.566 4.566 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.705 3.295 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.160 4.160 22 C -0.174 4.174 23 C -0.203 4.203 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.154 0.846 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.214 -4.162 -25.085 25.429 hybrid contribution -0.284 -1.312 0.463 1.420 sum -0.070 -5.474 -24.622 25.223 Atomic orbital electron populations 1.22729 0.81251 1.02543 1.00280 1.87901 1.19536 1.25792 1.94766 1.22556 0.95309 0.83761 0.93207 1.22007 1.01822 0.99596 0.93563 1.21802 1.01620 0.94204 0.88804 1.60577 1.29942 1.39906 1.01911 1.22090 1.02017 0.94457 0.87885 1.19081 0.83250 1.01899 0.96317 0.86589 1.29171 0.94969 0.92166 0.91456 1.81039 1.13520 1.09947 1.10143 1.19631 0.96753 0.96338 0.91610 1.21035 1.43739 1.00916 0.90893 0.90788 1.24995 0.95024 0.97320 0.95804 1.69905 1.47644 1.36286 0.99720 0.86811 0.79745 0.85274 0.77698 1.19951 1.21336 1.18898 1.23002 0.93877 1.03265 0.95872 1.22767 0.96964 1.01126 0.96516 1.23538 0.98832 1.00503 0.97412 0.93836 0.93930 0.89692 0.92049 0.89564 0.90600 0.95069 0.84570 0.89055 0.94776 0.94671 0.95860 0.92562 0.88470 0.90479 0.89994 0.91315 0.91202 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.54 101.05 1.07 1.30 16 2 O -0.36 -3.72 9.98 -35.23 -0.35 -4.07 16 3 C 0.09 0.82 0.72 -89.81 -0.06 0.75 16 4 C -0.13 -1.25 4.49 -26.73 -0.12 -1.37 16 5 C 0.06 0.72 5.41 -3.83 -0.02 0.70 16 6 N -0.69 -8.92 6.50 -113.78 -0.74 -9.66 16 7 C 0.07 0.93 5.12 -3.82 -0.02 0.91 16 8 C 0.02 0.29 2.42 -93.40 -0.23 0.07 16 9 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 10 C 0.24 4.82 12.98 -20.76 -0.27 4.55 16 11 N -0.47 -10.29 18.54 42.15 0.78 -9.51 16 12 C 0.00 -0.09 3.49 -27.88 -0.10 -0.19 16 13 C -0.53 -14.32 9.15 -34.44 -0.32 -14.63 16 14 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 17 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 21 C -0.12 -0.98 7.23 -25.92 -0.19 -1.17 16 22 C -0.14 -0.99 8.02 -25.92 -0.21 -1.19 16 23 C -0.17 -1.24 7.19 -25.92 -0.19 -1.43 16 24 H 0.04 0.37 7.17 -51.93 -0.37 0.00 16 25 H 0.04 0.31 6.70 -51.93 -0.35 -0.04 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.58 7.35 -51.93 -0.38 0.20 16 28 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 29 H 0.08 0.84 7.94 -51.93 -0.41 0.42 16 30 H 0.03 0.37 7.88 -51.93 -0.41 -0.04 16 31 H 0.34 4.52 7.81 -39.29 -0.31 4.21 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.04 0.71 7.57 -51.93 -0.39 0.31 16 35 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.10 0.70 8.04 -51.93 -0.42 0.28 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.52 6.83 -51.93 -0.35 0.16 16 42 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -30.98 343.19 -6.92 -37.90 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.14 Total: 0.33 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -0.75 Total: -9.80 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.82 Total: -45.63 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.35 Total: -4.07 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.98 -6.92 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515055034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.183 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds